Wall clock time and date at job start Tue Mar 31 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47388 * 2 1 4 4 H 1.08998 * 109.47544 * 305.00566 * 3 2 1 5 5 C 1.52995 * 109.47371 * 184.99974 * 3 2 1 6 6 O 1.42902 * 109.47336 * 305.00280 * 5 3 2 7 7 N 1.46503 * 109.47014 * 65.00254 * 3 2 1 8 8 C 1.34778 * 120.00261 * 205.00564 * 7 3 2 9 9 O 1.21556 * 119.99675 * 359.97438 * 8 7 3 10 10 C 1.47861 * 120.00293 * 179.97438 * 8 7 3 11 11 C 1.39669 * 120.10000 * 359.72252 * 10 8 7 12 12 C 1.38041 * 120.03752 * 179.74263 * 11 10 8 13 13 C 1.38173 * 120.24530 * 0.55639 * 12 11 10 14 14 C 1.39180 * 120.19971 * 359.69383 * 13 12 11 15 15 S 1.76204 * 120.02103 * 180.02562 * 14 13 12 16 16 C 1.76208 * 99.99867 * 265.52809 * 15 14 13 17 17 H 1.07996 * 119.99913 * 5.11587 * 16 15 14 18 18 C 1.38723 * 119.99721 * 185.11749 * 16 15 14 19 19 N 1.31625 * 120.00355 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47143 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47274 * 119.99876 * 20 18 16 23 23 H 1.48496 * 109.47316 * 240.00012 * 20 18 16 24 24 C 1.38875 * 119.95909 * 0.02562 * 14 13 12 25 25 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47168 * 59.99624 * 1 2 3 27 27 H 1.08997 * 109.47161 * 299.99937 * 1 2 3 28 28 H 1.08997 * 109.47168 * 120.00375 * 2 1 3 29 29 H 1.08997 * 109.47161 * 240.00063 * 2 1 3 30 30 H 1.09004 * 109.47158 * 65.00391 * 5 3 2 31 31 H 1.09008 * 109.47531 * 185.00110 * 5 3 2 32 32 H 0.96698 * 113.99984 * 180.02562 * 6 5 3 33 33 H 0.97002 * 120.00291 * 24.99760 * 7 3 2 34 34 H 1.08008 * 119.98165 * 359.97438 * 11 10 8 35 35 H 1.08007 * 119.87717 * 180.27161 * 12 11 10 36 36 H 1.07997 * 119.90089 * 179.72154 * 13 12 11 37 37 H 0.96993 * 120.00114 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.12047 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0974 1.2519 8 6 1.5256 3.4383 1.2997 9 8 1.7331 4.1043 0.3042 10 6 1.1340 4.0993 2.5630 11 6 0.8893 3.3357 3.7066 12 6 0.5290 3.9545 4.8867 13 6 0.3974 5.3290 4.9399 14 6 0.6336 6.0993 3.8050 15 16 0.4651 7.8517 3.8783 16 6 -1.1965 8.0230 3.3173 17 1 -1.7972 7.1448 3.1324 18 6 -1.7329 9.2859 3.1131 19 7 -1.0006 10.3563 3.3380 20 14 -3.4946 9.4676 2.5191 21 1 -4.0988 8.1225 2.3431 22 1 -4.2782 10.2344 3.5206 23 1 -3.5075 10.1901 1.2218 24 6 1.0023 5.4859 2.6149 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8498 1.0377 -1.0961 31 1 3.9356 2.4655 -0.0366 32 1 5.0951 0.5962 0.8941 33 1 1.4871 1.5660 2.0463 34 1 0.9859 2.2606 3.6685 35 1 0.3447 3.3618 5.7706 36 1 0.1108 5.8070 5.8649 37 1 -1.3758 11.2393 3.1956 38 1 1.1866 6.0812 1.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124082426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:56 Heat of formation + Delta-G solvation = -76.120700 kcal Electronic energy + Delta-G solvation = -20809.593805 eV Core-core repulsion = 17549.600728 eV Total energy + Delta-G solvation = -3259.993077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13458 -38.23884 -37.18678 -35.32437 -32.62372 -32.49768 -30.74951 -30.45237 -28.64186 -25.56252 -24.20532 -23.38657 -22.28857 -20.94981 -20.35735 -18.29828 -17.68754 -17.32604 -16.29671 -15.76028 -15.33872 -15.10059 -14.84380 -14.49782 -14.47429 -14.17118 -13.90404 -13.56219 -13.35683 -12.93576 -12.82711 -12.55090 -12.23391 -11.66247 -11.59897 -11.30134 -11.13452 -11.10999 -11.10015 -11.07088 -10.68964 -10.27007 -9.94252 -9.72336 -9.15986 -9.12788 -8.98793 -8.56002 -8.00997 -6.70075 -6.27827 -4.01588 1.19259 1.69179 3.05303 3.13156 3.20340 3.24105 3.29751 3.49113 4.03590 4.11839 4.28281 4.44792 4.75696 4.87881 4.89731 5.08529 5.11325 5.13739 5.23859 5.27785 5.40703 5.48047 5.48780 5.61770 5.70129 5.75382 5.88511 5.90052 6.01483 6.05695 6.27910 6.44361 6.61786 6.66480 6.95417 7.21675 7.34710 7.55863 7.58798 8.32524 8.33998 9.18183 10.78988 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.003569 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.616245 B = 7843.975212 C = 8224.929745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C 0.148 3.852 4 H 0.100 0.900 5 C 0.062 3.938 6 O -0.569 6.569 7 N -0.718 5.718 8 C 0.564 3.436 9 O -0.539 6.539 10 C -0.154 4.154 11 C -0.088 4.088 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.107 4.107 15 S -0.036 6.036 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.019 4.019 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.377 0.623 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.269 0.731 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -20.991 -3.062 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C 0.043 3.957 4 H 0.118 0.882 5 C -0.017 4.017 6 O -0.374 6.374 7 N -0.371 5.371 8 C 0.353 3.647 9 O -0.417 6.417 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.218 4.218 15 S 0.199 5.801 16 C -0.666 4.666 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.506 5.506 20 Si 0.747 3.253 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.041 4.041 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.224 0.776 33 H 0.236 0.764 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.735 -19.517 -3.324 20.913 hybrid contribution -1.370 -1.004 -0.556 1.787 sum 5.366 -20.521 -3.880 21.563 Atomic orbital electron populations 1.21807 0.95328 1.01671 1.02459 1.21694 0.96164 0.94962 1.03457 1.21093 0.92315 0.93920 0.88379 0.88170 1.22673 0.94299 0.94752 0.89995 1.86443 1.25245 1.72154 1.53603 1.45865 1.71062 1.06769 1.13369 1.18440 0.76239 0.81712 0.88333 1.90760 1.50543 1.64177 1.36215 1.19859 1.08026 0.94716 0.93312 1.21147 0.98423 0.98585 0.92593 1.21058 1.02472 0.94974 0.97615 1.21954 0.94110 0.93057 0.98526 1.22842 1.00943 1.03616 0.94393 1.83602 1.19895 0.90292 1.86360 1.22885 0.96161 0.95342 1.52234 0.90571 1.25000 0.99035 0.94758 0.94783 1.69995 1.36476 0.98092 1.46005 0.86070 0.82308 0.78457 0.78491 1.19503 1.20477 1.20431 1.21941 0.91743 0.92360 0.98030 0.92528 0.92575 0.92407 0.90551 0.90691 0.92934 0.92811 0.77603 0.76352 0.86510 0.85875 0.85096 0.92119 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.80 37.15 0.36 -0.91 16 2 C -0.12 -1.01 5.19 -26.74 -0.14 -1.15 16 3 C 0.15 1.55 2.37 -67.93 -0.16 1.39 16 4 H 0.10 1.18 7.58 -51.93 -0.39 0.78 16 5 C 0.06 0.59 6.85 37.16 0.25 0.85 16 6 O -0.57 -5.03 12.83 -35.23 -0.45 -5.48 16 7 N -0.72 -8.68 4.43 -54.75 -0.24 -8.92 16 8 C 0.56 9.23 7.74 -12.32 -0.10 9.13 16 9 O -0.54 -10.61 16.01 5.32 0.09 -10.53 16 10 C -0.15 -2.66 5.87 -105.00 -0.62 -3.27 16 11 C -0.09 -1.25 9.54 -39.12 -0.37 -1.63 16 12 C -0.14 -2.07 10.02 -39.68 -0.40 -2.47 16 13 C -0.06 -1.01 9.79 -39.26 -0.38 -1.39 16 14 C -0.11 -2.32 5.45 -39.00 -0.21 -2.54 16 15 S -0.04 -0.94 21.41 -107.50 -2.30 -3.24 16 16 C -0.52 -14.77 9.46 30.91 0.29 -14.47 16 17 H 0.08 2.16 7.79 -52.49 -0.41 1.75 16 18 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 19 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C -0.02 -0.39 9.34 -38.92 -0.36 -0.76 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 28 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.38 1.86 9.12 45.56 0.42 2.28 16 33 H 0.40 4.08 6.63 -40.82 -0.27 3.81 16 34 H 0.12 1.22 6.40 -52.48 -0.34 0.88 16 35 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 36 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -33.51 341.45 -8.28 -41.78 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.29 Total: 4.77 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.93 Total: -15.25 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.49 Total: -33.77 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.37 Total: -16.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -0.94 SS G_CDS: -2.30 Total: -3.24 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.51 -8.28 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124082426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.337 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds