Wall clock time and date at job start Tue Mar 31 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47388 * 2 1 4 4 H 1.08998 * 109.47544 * 305.00566 * 3 2 1 5 5 C 1.52995 * 109.47371 * 184.99974 * 3 2 1 6 6 O 1.42902 * 109.47336 * 305.00280 * 5 3 2 7 7 N 1.46503 * 109.47014 * 65.00254 * 3 2 1 8 8 C 1.34778 * 120.00261 * 205.00564 * 7 3 2 9 9 O 1.21556 * 119.99675 * 359.97438 * 8 7 3 10 10 C 1.47861 * 120.00293 * 179.97438 * 8 7 3 11 11 C 1.39669 * 120.10000 * 359.72252 * 10 8 7 12 12 C 1.38041 * 120.03752 * 179.74263 * 11 10 8 13 13 C 1.38173 * 120.24530 * 0.55639 * 12 11 10 14 14 C 1.39180 * 120.19971 * 359.69383 * 13 12 11 15 15 S 1.76204 * 120.02103 * 180.02562 * 14 13 12 16 16 C 1.76208 * 99.99867 * 265.52809 * 15 14 13 17 17 H 1.07996 * 119.99913 * 5.11587 * 16 15 14 18 18 C 1.38723 * 119.99721 * 185.11749 * 16 15 14 19 19 N 1.31625 * 120.00355 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99838 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47143 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47274 * 119.99876 * 20 18 16 23 23 H 1.48496 * 109.47316 * 240.00012 * 20 18 16 24 24 C 1.38875 * 119.95909 * 0.02562 * 14 13 12 25 25 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47168 * 59.99624 * 1 2 3 27 27 H 1.08997 * 109.47161 * 299.99937 * 1 2 3 28 28 H 1.08997 * 109.47168 * 120.00375 * 2 1 3 29 29 H 1.08997 * 109.47161 * 240.00063 * 2 1 3 30 30 H 1.09004 * 109.47158 * 65.00391 * 5 3 2 31 31 H 1.09008 * 109.47531 * 185.00110 * 5 3 2 32 32 H 0.96698 * 113.99984 * 180.02562 * 6 5 3 33 33 H 0.97002 * 120.00291 * 24.99760 * 7 3 2 34 34 H 1.08008 * 119.98165 * 359.97438 * 11 10 8 35 35 H 1.08007 * 119.87717 * 180.27161 * 12 11 10 36 36 H 1.07997 * 119.90089 * 179.72154 * 13 12 11 37 37 H 0.96993 * 120.00114 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.12047 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1257 6 8 4.1293 0.6403 0.9121 7 7 1.6525 2.0974 1.2519 8 6 1.5256 3.4383 1.2997 9 8 1.7331 4.1043 0.3042 10 6 1.1340 4.0993 2.5630 11 6 0.8893 3.3357 3.7066 12 6 0.5290 3.9545 4.8867 13 6 0.3974 5.3290 4.9399 14 6 0.6336 6.0993 3.8050 15 16 0.4651 7.8517 3.8783 16 6 -1.1965 8.0230 3.3173 17 1 -1.7972 7.1448 3.1324 18 6 -1.7329 9.2859 3.1131 19 7 -1.0006 10.3563 3.3380 20 14 -3.4946 9.4676 2.5191 21 1 -4.0988 8.1225 2.3431 22 1 -4.2782 10.2344 3.5206 23 1 -3.5075 10.1901 1.2218 24 6 1.0023 5.4859 2.6149 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8498 1.0377 -1.0961 31 1 3.9356 2.4655 -0.0366 32 1 5.0951 0.5962 0.8941 33 1 1.4871 1.5660 2.0463 34 1 0.9859 2.2606 3.6685 35 1 0.3447 3.3618 5.7706 36 1 0.1108 5.8070 5.8649 37 1 -1.3758 11.2393 3.1956 38 1 1.1866 6.0812 1.7328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124082426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:56 Heat of formation + Delta-G solvation = -100.493892 kcal Electronic energy + Delta-G solvation = -20810.650706 eV Core-core repulsion = 17549.600728 eV Total energy + Delta-G solvation = -3261.049978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36373 -39.44377 -38.21401 -36.17833 -34.66331 -33.67137 -32.03877 -31.77286 -29.48658 -27.75559 -25.31490 -24.30056 -23.65960 -21.94732 -21.52246 -20.01278 -18.96899 -18.44306 -17.35728 -17.00473 -16.94516 -16.63949 -16.31287 -15.78998 -15.45583 -15.19606 -15.08068 -14.78731 -14.63013 -14.43554 -13.86740 -13.55345 -13.29501 -13.22927 -13.05307 -12.98779 -12.66111 -12.39897 -12.34264 -11.99426 -11.80630 -11.73263 -11.26800 -11.15498 -10.90796 -10.73594 -10.24395 -9.89995 -9.70497 -8.81419 -8.40227 -6.20387 -0.18698 0.24747 1.28992 1.35747 1.45865 1.64266 1.79722 2.07056 2.23906 2.79702 2.92844 3.38287 3.41005 3.61405 3.78658 3.93672 4.01531 4.02004 4.23984 4.35269 4.44059 4.48132 4.50829 4.62913 4.71247 4.76079 4.91104 4.93811 5.09234 5.17760 5.21997 5.31730 5.37865 5.41383 5.48246 5.49720 5.85687 6.15121 6.48013 6.85221 7.00221 7.13844 8.67191 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.003569 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.616245 B = 7843.975212 C = 8224.929745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.139 3.861 4 H 0.083 0.917 5 C 0.068 3.932 6 O -0.576 6.576 7 N -0.695 5.695 8 C 0.562 3.438 9 O -0.583 6.583 10 C -0.157 4.157 11 C -0.063 4.063 12 C -0.121 4.121 13 C -0.063 4.063 14 C -0.129 4.129 15 S -0.095 6.095 16 C -0.536 4.536 17 H 0.067 0.933 18 C 0.020 3.980 19 N -0.906 5.906 20 Si 0.993 3.007 21 H -0.266 1.266 22 H -0.265 1.265 23 H -0.272 1.272 24 C -0.045 4.045 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.395 0.605 33 H 0.414 0.586 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -25.038 -2.330 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.035 3.965 4 H 0.101 0.899 5 C -0.011 4.011 6 O -0.384 6.384 7 N -0.347 5.347 8 C 0.350 3.650 9 O -0.464 6.464 10 C -0.162 4.162 11 C -0.082 4.082 12 C -0.140 4.140 13 C -0.084 4.084 14 C -0.240 4.240 15 S 0.140 5.860 16 C -0.684 4.684 17 H 0.085 0.915 18 C -0.185 4.185 19 N -0.542 5.542 20 Si 0.814 3.186 21 H -0.191 1.191 22 H -0.189 1.189 23 H -0.197 1.197 24 C -0.067 4.067 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.245 0.755 33 H 0.252 0.748 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.082 -23.617 -2.569 24.523 hybrid contribution -1.045 0.053 -0.767 1.297 sum 5.037 -23.565 -3.336 24.327 Atomic orbital electron populations 1.21823 0.95419 1.02480 1.01649 1.21639 0.95923 0.92895 1.04612 1.21313 0.93232 0.95112 0.86852 0.89908 1.22514 0.93446 0.93672 0.91489 1.86382 1.27055 1.71593 1.53328 1.45725 1.69178 1.05164 1.14647 1.18393 0.76186 0.82951 0.87438 1.90743 1.52712 1.65447 1.37537 1.19984 1.07740 0.93347 0.95152 1.21691 0.94931 1.00825 0.90749 1.21548 0.99651 0.93315 0.99470 1.22075 0.94190 0.94827 0.97289 1.22502 1.04600 1.00484 0.96440 1.83475 1.19720 0.96288 1.86550 1.23100 0.97168 0.95477 1.52612 0.91514 1.26004 1.03692 0.94195 0.94611 1.70112 1.38572 0.98680 1.46874 0.84993 0.76648 0.78617 0.78295 1.19063 1.18944 1.19715 1.21621 0.94247 0.94160 0.96672 0.90908 0.93519 0.93145 0.89813 0.89007 0.90511 0.95592 0.75533 0.74808 0.81307 0.80703 0.84635 0.91671 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.80 71.98 0.71 -1.42 16 2 C -0.11 -1.45 5.19 30.59 0.16 -1.30 16 3 C 0.14 2.66 2.37 44.99 0.11 2.77 16 4 H 0.08 1.91 7.58 -2.39 -0.02 1.89 16 5 C 0.07 1.17 6.85 71.98 0.49 1.67 16 6 O -0.58 -8.40 12.83 -148.98 -1.91 -10.31 16 7 N -0.69 -15.29 4.43 -445.40 -1.97 -17.27 16 8 C 0.56 18.22 7.74 86.79 0.67 18.90 16 9 O -0.58 -23.98 16.01 -3.89 -0.06 -24.04 16 10 C -0.16 -5.31 5.87 -20.11 -0.12 -5.42 16 11 C -0.06 -1.54 9.54 22.57 0.22 -1.32 16 12 C -0.12 -3.02 10.02 22.21 0.22 -2.80 16 13 C -0.06 -2.23 9.79 22.48 0.22 -2.01 16 14 C -0.13 -5.82 5.45 22.65 0.12 -5.70 16 15 S -0.09 -5.27 21.41 -56.49 -1.21 -6.48 16 16 C -0.54 -31.94 9.46 67.94 0.64 -31.29 16 17 H 0.07 3.95 7.79 -2.91 -0.02 3.92 16 18 C 0.02 1.17 5.49 84.84 0.47 1.64 16 19 N -0.91 -55.12 13.22 21.63 0.29 -54.83 16 20 Si 0.99 45.10 29.55 68.60 2.03 47.12 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C -0.05 -1.96 9.34 22.70 0.21 -1.75 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 28 H 0.08 1.01 7.73 -2.39 -0.02 1.00 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.40 2.75 9.12 -74.06 -0.68 2.07 16 33 H 0.41 6.72 6.63 -92.71 -0.61 6.10 16 34 H 0.17 2.38 6.40 -2.91 -0.02 2.36 16 35 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.10 5.07 7.65 -2.91 -0.02 5.05 16 Total: -1.00 -79.00 341.45 1.08 -77.92 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.20 Total: 15.93 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.12 Total: -28.04 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.69 Total: -72.10 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.97 Total: -34.35 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -5.27 SS G_CDS: -1.21 Total: -6.48 kcal Total: -79.00 1.08 -77.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124082426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.573 kcal (2) G-P(sol) polarization free energy of solvation -78.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds