Wall clock time and date at job start Tue Mar 31 2020 07:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81404 * 102.99941 * 2 1 4 4 H 1.08992 * 109.46906 * 55.00435 * 3 2 1 5 5 C 1.53001 * 109.47059 * 294.99998 * 3 2 1 6 6 C 1.53003 * 109.47082 * 175.00341 * 3 2 1 7 7 N 1.46502 * 109.46794 * 299.99685 * 6 3 2 8 8 C 1.34779 * 119.99833 * 180.02562 * 7 6 3 9 9 O 1.21598 * 119.99933 * 359.97438 * 8 7 6 10 10 C 1.47532 * 120.00031 * 180.02562 * 8 7 6 11 11 C 1.39666 * 120.19762 * 0.02562 * 10 8 7 12 12 C 1.37825 * 119.92034 * 179.97438 * 11 10 8 13 13 C 1.38579 * 120.32485 * 0.02562 * 12 11 10 14 14 C 1.38025 * 120.40043 * 359.97438 * 13 12 11 15 15 C 1.38835 * 120.07188 * 359.74548 * 14 13 12 16 16 O 1.35518 * 120.16385 * 180.27821 * 15 14 13 17 17 C 1.34811 * 116.99676 * 354.39084 * 16 15 14 18 18 H 1.08002 * 120.00619 * 5.07169 * 17 16 15 19 19 C 1.38702 * 119.99839 * 185.06336 * 17 16 15 20 20 N 1.31523 * 119.99971 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00032 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46935 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47003 * 120.00444 * 21 19 17 24 24 H 1.48501 * 109.46934 * 240.00420 * 21 19 17 25 25 H 1.08998 * 109.47151 * 59.99991 * 1 2 3 26 26 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46981 * 299.99805 * 1 2 3 28 28 H 1.08992 * 109.47246 * 180.02562 * 5 3 2 29 29 H 1.09002 * 109.47147 * 59.99797 * 5 3 2 30 30 H 1.09000 * 109.47022 * 300.00139 * 5 3 2 31 31 H 1.09000 * 109.47358 * 59.99640 * 6 3 2 32 32 H 1.08992 * 109.47239 * 180.02562 * 6 3 2 33 33 H 0.96998 * 120.00328 * 0.02562 * 7 6 3 34 34 H 1.08002 * 120.04044 * 359.94790 * 11 10 8 35 35 H 1.08002 * 119.84338 * 179.97438 * 12 11 10 36 36 H 1.07995 * 119.79803 * 179.97438 * 13 12 11 37 37 H 1.07999 * 119.96374 * 180.02562 * 14 13 12 38 38 H 0.96998 * 119.99694 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7370 1.9412 0.1256 7 7 4.1959 1.3341 1.3775 8 6 5.5035 1.3668 1.7026 9 8 6.3023 1.8999 0.9567 10 6 5.9657 0.7550 2.9630 11 6 5.0520 0.1403 3.8220 12 6 5.4902 -0.4300 4.9977 13 6 6.8343 -0.3964 5.3333 14 6 7.7488 0.2075 4.4942 15 6 7.3264 0.7820 3.3030 16 8 8.2235 1.3705 2.4751 17 6 9.4929 1.4682 2.9183 18 1 9.7736 1.0141 3.8572 19 6 10.4386 2.1518 2.1685 20 7 10.0967 2.7051 1.0253 21 14 12.1977 2.2866 2.7822 22 1 12.3230 1.5833 4.0842 23 1 13.1157 1.6652 1.7941 24 1 12.5530 3.7180 2.9561 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9883 3.4635 -1.3076 29 1 0.6635 2.2778 -1.3970 30 1 2.2354 1.9150 -2.1492 31 1 4.2296 1.4546 -0.7162 32 1 3.9822 3.0032 0.1261 33 1 3.5587 0.9086 1.9723 34 1 4.0033 0.1122 3.5655 35 1 4.7825 -0.9046 5.6613 36 1 7.1683 -0.8456 6.2569 37 1 8.7947 0.2292 4.7625 38 1 10.7580 3.1835 0.5012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129413306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:15 Heat of formation + Delta-G solvation = -62.117131 kcal Electronic energy + Delta-G solvation = -21121.898130 eV Core-core repulsion = 17862.512294 eV Total energy + Delta-G solvation = -3259.385837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27898 -39.85650 -38.02632 -36.81747 -34.33265 -33.88818 -31.92232 -30.56270 -29.68658 -27.63916 -27.08706 -24.43532 -23.28024 -22.78958 -21.41329 -19.84911 -19.26793 -17.90520 -17.58809 -17.21196 -16.43165 -16.24218 -15.96752 -15.84918 -15.63144 -15.30585 -15.05811 -14.74088 -14.43841 -14.28819 -14.08221 -13.71543 -13.56066 -13.53341 -13.21512 -12.99594 -12.68877 -12.54692 -12.45706 -12.33708 -12.15714 -12.08545 -11.42408 -10.83825 -10.79447 -10.62744 -10.11925 -9.77887 -9.03068 -8.70898 -8.43974 -6.15007 0.12853 0.66683 0.73356 1.32800 1.43601 1.52871 1.65668 2.09873 2.16323 2.25711 2.88383 3.23398 3.47008 3.53224 3.84978 4.00540 4.08266 4.15046 4.29768 4.38630 4.41567 4.49290 4.52881 4.60744 4.70970 4.72339 4.86084 4.97471 4.99116 5.08412 5.14627 5.20410 5.48447 5.49933 5.61634 5.70131 5.97025 6.17666 6.67196 6.95296 7.46685 7.81334 8.76887 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.004012 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.438039 B = 6976.668327 C = 8247.974164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.303 6.303 3 C -0.052 4.052 4 H 0.112 0.888 5 C -0.143 4.143 6 C 0.141 3.859 7 N -0.715 5.715 8 C 0.548 3.452 9 O -0.569 6.569 10 C -0.246 4.246 11 C -0.029 4.029 12 C -0.200 4.200 13 C -0.039 4.039 14 C -0.257 4.257 15 C 0.150 3.850 16 O -0.189 6.189 17 C -0.428 4.428 18 H 0.107 0.893 19 C -0.023 4.023 20 N -0.905 5.905 21 Si 1.023 2.977 22 H -0.245 1.245 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.366 -4.746 3.899 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.078 6.078 3 C -0.180 4.180 4 H 0.131 0.869 5 C -0.202 4.202 6 C 0.016 3.984 7 N -0.371 5.371 8 C 0.338 3.662 9 O -0.449 6.449 10 C -0.250 4.250 11 C -0.048 4.048 12 C -0.218 4.218 13 C -0.057 4.057 14 C -0.277 4.277 15 C 0.094 3.906 16 O -0.092 6.092 17 C -0.504 4.504 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.541 5.541 21 Si 0.841 3.159 22 H -0.168 1.168 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.108 0.892 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.251 0.749 34 H 0.173 0.827 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.142 0.858 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.068 -5.006 2.942 19.932 hybrid contribution 0.160 1.084 -0.028 1.096 sum -18.907 -3.922 2.914 19.528 Atomic orbital electron populations 1.23476 0.90810 1.07447 1.06147 1.87515 1.10902 1.11408 1.97959 1.23339 0.96305 0.94357 1.04035 0.86940 1.22016 1.02458 1.01450 0.94252 1.21081 0.92471 0.98375 0.86460 1.45681 1.07294 1.60515 1.23611 1.18551 0.82470 0.79141 0.86080 1.90926 1.55078 1.45832 1.53039 1.19291 0.91673 1.14467 0.99601 1.21277 0.98410 0.92517 0.92579 1.21173 0.96011 1.06100 0.98538 1.21439 0.93072 0.93281 0.97936 1.21303 1.01597 1.08088 0.96665 1.20074 0.89807 0.90671 0.90002 1.84179 1.18475 1.66926 1.39602 1.22094 0.83232 1.36785 1.08259 0.87551 1.26773 1.05189 0.94773 0.95434 1.70336 1.36613 1.33388 1.13794 0.84492 0.73518 0.78846 0.78997 1.16822 1.19393 1.19338 0.89250 0.87235 0.89101 0.90521 0.89805 0.91938 0.93232 0.91084 0.74938 0.82684 0.81799 0.82725 0.85838 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.45 113.37 1.19 -0.02 16 2 S -0.30 -6.15 20.99 -56.49 -1.19 -7.33 16 3 C -0.05 -1.00 2.93 30.60 0.09 -0.91 16 4 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.14 -2.19 9.10 71.98 0.66 -1.53 16 6 C 0.14 4.22 5.12 86.38 0.44 4.67 16 7 N -0.71 -24.12 5.22 -466.26 -2.43 -26.55 16 8 C 0.55 25.91 7.76 86.69 0.67 26.58 16 9 O -0.57 -34.56 15.17 16.87 0.26 -34.30 16 10 C -0.25 -11.09 5.89 -19.99 -0.12 -11.21 16 11 C -0.03 -0.94 9.53 22.52 0.21 -0.72 16 12 C -0.20 -5.55 10.02 22.25 0.22 -5.33 16 13 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 14 C -0.26 -11.24 9.16 22.36 0.20 -11.03 16 15 C 0.15 7.91 6.66 22.91 0.15 8.07 16 16 O -0.19 -12.30 7.84 0.89 0.01 -12.29 16 17 C -0.43 -26.30 9.49 67.93 0.64 -25.66 16 18 H 0.11 5.87 5.21 -2.91 -0.02 5.85 16 19 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 20 N -0.91 -59.95 13.67 21.62 0.30 -59.65 16 21 Si 1.02 44.80 29.55 68.60 2.03 46.83 16 22 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H 0.09 0.77 7.14 -2.39 -0.02 0.75 16 26 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 0.90 6.92 -2.39 -0.02 0.89 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.41 10.91 6.00 -92.71 -0.56 10.35 16 34 H 0.16 3.56 6.40 -2.91 -0.02 3.54 16 35 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 38 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -88.52 334.13 4.55 -83.97 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.53 Total: 28.34 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 5.06 Total: -19.02 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -2.14 Total: -86.20 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: 0.26 Total: -46.59 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.19 Total: -7.33 kcal Total: -88.52 4.55 -83.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129413306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.855 kcal (2) G-P(sol) polarization free energy of solvation -88.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds