Wall clock time and date at job start Tue Mar 31 2020 07:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 O 1.42904 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47370 * 120.00356 * 2 1 3 6 6 C 1.34780 * 119.99550 * 299.99574 * 5 2 1 7 7 O 1.21274 * 120.00259 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99723 * 179.97438 * 6 5 2 9 9 S 1.80999 * 109.47175 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00173 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99774 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99744 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00300 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99729 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47016 * 59.99841 * 14 12 10 16 16 H 1.48499 * 109.46949 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46810 * 300.00074 * 14 12 10 18 18 C 1.50706 * 109.47383 * 240.00345 * 2 1 3 19 19 C 1.38237 * 119.99744 * 270.00236 * 18 2 1 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00223 * 90.01446 * 18 2 1 24 24 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47313 * 299.99349 * 1 2 3 26 26 H 1.09000 * 109.47547 * 59.99968 * 1 2 3 27 27 H 1.08996 * 109.47399 * 300.00011 * 3 2 1 28 28 H 1.09001 * 109.47328 * 60.00432 * 3 2 1 29 29 H 0.96704 * 113.99357 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00154 * 120.00278 * 5 2 1 31 31 H 1.09009 * 109.47428 * 300.00432 * 8 6 5 32 32 H 1.09001 * 109.47068 * 60.00404 * 8 6 5 33 33 H 0.97003 * 120.00184 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.00088 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07998 * 119.99975 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 7 2.0183 -0.6907 1.1961 6 6 1.6928 -0.2302 2.4202 7 8 0.9952 0.7556 2.5316 8 6 2.1947 -0.9409 3.6506 9 16 1.5909 -0.0880 5.1285 10 6 2.3071 -1.1006 6.3802 11 1 2.9100 -1.9534 6.1054 12 6 2.0954 -0.8026 7.7192 13 7 1.3601 0.2365 8.0541 14 14 2.8541 -1.8765 9.0462 15 1 4.3324 -1.8667 8.9057 16 1 2.4798 -1.3498 10.3832 17 1 2.3526 -3.2671 8.9043 18 6 2.0323 -0.7103 -1.2305 19 6 2.2627 -2.0730 -1.1963 20 6 2.7240 -2.7244 -2.3249 21 6 2.9540 -2.0135 -3.4879 22 6 2.7283 -0.6502 -3.5207 23 6 2.2631 0.0007 -2.3933 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.8622 2.3260 -0.0002 30 1 2.5760 -1.4793 1.1071 31 1 1.8309 -1.9685 3.6505 32 1 3.2847 -0.9413 3.6508 33 1 1.2125 0.4449 8.9899 34 1 2.0830 -2.6284 -0.2876 35 1 2.9044 -3.7889 -2.2980 36 1 3.3140 -2.5227 -4.3697 37 1 2.9121 -0.0940 -4.4280 38 1 2.0837 1.0653 -2.4199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134393087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:46 Heat of formation + Delta-G solvation = -56.323021 kcal Electronic energy + Delta-G solvation = -21232.317056 eV Core-core repulsion = 17973.182471 eV Total energy + Delta-G solvation = -3259.134585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54028 -38.77835 -36.79413 -34.96292 -32.41626 -32.14709 -31.02991 -29.88330 -28.41752 -26.17372 -25.46427 -23.61894 -22.55664 -20.80800 -19.44818 -18.22083 -17.38187 -17.25799 -16.07560 -16.05415 -15.23224 -15.04062 -14.79426 -14.63524 -14.28996 -14.02034 -13.81560 -13.48427 -13.14150 -13.00032 -12.62606 -12.46784 -12.28414 -12.24228 -11.80722 -11.64367 -11.24486 -11.03144 -11.02656 -10.75706 -10.73989 -10.03650 -9.80615 -9.16530 -9.08160 -9.06392 -9.02696 -8.69746 -8.22481 -6.47793 -6.20336 -3.90377 1.16634 1.23235 3.03629 3.11930 3.24674 3.28371 3.31937 3.60873 3.74738 4.14926 4.22264 4.38641 4.70884 4.79908 4.91799 5.05448 5.11635 5.14873 5.22416 5.31987 5.41081 5.46378 5.58927 5.73687 5.75674 5.79336 5.82607 5.90354 5.94195 6.18002 6.25499 6.31338 6.33007 6.35274 6.74663 6.80309 7.60853 7.63827 7.77814 8.36549 8.64973 9.25040 10.87026 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.003346 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.401378 B = 8365.828557 C = 8818.031896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.224 3.776 3 C 0.061 3.939 4 O -0.563 6.563 5 N -0.722 5.722 6 C 0.540 3.460 7 O -0.519 6.519 8 C -0.154 4.154 9 S -0.058 6.058 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.101 4.101 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.376 0.624 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.269 0.731 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -2.408 -23.095 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 C -0.018 4.018 4 O -0.368 6.368 5 N -0.377 5.377 6 C 0.326 3.674 7 O -0.394 6.394 8 C -0.304 4.304 9 S 0.169 5.831 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.069 4.069 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.119 4.119 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.222 0.778 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.015 -1.304 -22.747 22.807 hybrid contribution 1.723 -1.648 0.633 2.466 sum 2.738 -2.952 -22.114 22.478 Atomic orbital electron populations 1.22191 0.92385 1.03262 1.04007 1.19083 0.94019 0.90479 0.82716 1.22686 0.81628 0.96065 1.01376 1.86494 1.19209 1.33295 1.97753 1.46096 1.54742 1.32362 1.04505 1.20214 0.79329 0.84199 0.83624 1.90609 1.36913 1.25618 1.86255 1.23540 1.04484 1.03834 0.98586 1.85316 1.67435 1.38568 0.91815 1.22842 1.37308 1.15628 0.92652 0.91009 1.24982 0.95055 0.95585 0.97923 1.70007 1.36325 1.25807 1.18227 0.86231 0.79465 0.80094 0.79748 1.19935 1.20826 1.19947 1.19747 0.98891 0.93812 0.94473 1.20971 0.99879 0.93942 0.98722 1.21109 0.99408 0.99908 0.93027 1.21140 1.00594 0.94471 0.98086 1.21108 0.99657 0.94720 0.98191 1.20957 0.98890 0.99740 0.92340 0.91750 0.89131 0.91790 0.93360 0.90425 0.77802 0.76615 0.89355 0.89247 0.92160 0.85944 0.86003 0.86240 0.86116 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 8.38 37.15 0.31 -1.71 16 2 C 0.22 2.89 0.68 -132.97 -0.09 2.80 16 3 C 0.06 0.78 5.13 37.16 0.19 0.97 16 4 O -0.56 -7.20 12.91 -35.23 -0.45 -7.66 16 5 N -0.72 -10.47 4.72 -48.69 -0.23 -10.70 16 6 C 0.54 10.06 7.27 -10.99 -0.08 9.98 16 7 O -0.52 -11.09 12.07 5.56 0.07 -11.02 16 8 C -0.15 -3.16 6.16 36.00 0.22 -2.93 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 14 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.07 -0.79 4.51 -104.62 -0.47 -1.26 16 19 C -0.12 -1.24 8.96 -39.58 -0.35 -1.60 16 20 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 22 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.10 -1.04 8.92 -39.58 -0.35 -1.39 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.38 6.17 -51.93 -0.32 1.06 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.49 6.51 -51.93 -0.34 0.16 16 28 H 0.08 1.20 6.17 -51.93 -0.32 0.88 16 29 H 0.38 3.31 9.12 45.56 0.42 3.72 16 30 H 0.40 5.04 6.67 -40.82 -0.27 4.77 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.19 6.71 -52.48 -0.35 0.84 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 1.11 6.17 -52.49 -0.32 0.79 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -34.51 329.87 -7.78 -42.29 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.01 Total: 7.54 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -1.62 Total: -12.64 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.50 Total: -36.19 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.39 Total: -18.68 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.51 -7.78 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134393087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds