Wall clock time and date at job start Tue Mar 31 2020 07:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 O 1.42904 * 109.46786 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47370 * 120.00356 * 2 1 3 6 6 C 1.34780 * 119.99550 * 299.99574 * 5 2 1 7 7 O 1.21274 * 120.00259 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99723 * 179.97438 * 6 5 2 9 9 S 1.80999 * 109.47175 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00173 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99774 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99744 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00300 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99729 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47016 * 59.99841 * 14 12 10 16 16 H 1.48499 * 109.46949 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46810 * 300.00074 * 14 12 10 18 18 C 1.50706 * 109.47383 * 240.00345 * 2 1 3 19 19 C 1.38237 * 119.99744 * 270.00236 * 18 2 1 20 20 C 1.38235 * 119.99712 * 180.02562 * 19 18 2 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00223 * 90.01446 * 18 2 1 24 24 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47313 * 299.99349 * 1 2 3 26 26 H 1.09000 * 109.47547 * 59.99968 * 1 2 3 27 27 H 1.08996 * 109.47399 * 300.00011 * 3 2 1 28 28 H 1.09001 * 109.47328 * 60.00432 * 3 2 1 29 29 H 0.96704 * 113.99357 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00154 * 120.00278 * 5 2 1 31 31 H 1.09009 * 109.47428 * 300.00432 * 8 6 5 32 32 H 1.09001 * 109.47068 * 60.00404 * 8 6 5 33 33 H 0.97003 * 120.00184 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.00088 * 359.97438 * 19 18 2 35 35 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 37 37 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 38 38 H 1.07998 * 119.99975 * 0.02562 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 7 2.0183 -0.6907 1.1961 6 6 1.6928 -0.2302 2.4202 7 8 0.9952 0.7556 2.5316 8 6 2.1947 -0.9409 3.6506 9 16 1.5909 -0.0880 5.1285 10 6 2.3071 -1.1006 6.3802 11 1 2.9100 -1.9534 6.1054 12 6 2.0954 -0.8026 7.7192 13 7 1.3601 0.2365 8.0541 14 14 2.8541 -1.8765 9.0462 15 1 4.3324 -1.8667 8.9057 16 1 2.4798 -1.3498 10.3832 17 1 2.3526 -3.2671 8.9043 18 6 2.0323 -0.7103 -1.2305 19 6 2.2627 -2.0730 -1.1963 20 6 2.7240 -2.7244 -2.3249 21 6 2.9540 -2.0135 -3.4879 22 6 2.7283 -0.6502 -3.5207 23 6 2.2631 0.0007 -2.3933 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.8622 2.3260 -0.0002 30 1 2.5760 -1.4793 1.1071 31 1 1.8309 -1.9685 3.6505 32 1 3.2847 -0.9413 3.6508 33 1 1.2125 0.4449 8.9899 34 1 2.0830 -2.6284 -0.2876 35 1 2.9044 -3.7889 -2.2980 36 1 3.3140 -2.5227 -4.3697 37 1 2.9121 -0.0940 -4.4280 38 1 2.0837 1.0653 -2.4199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134393087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:46 Heat of formation + Delta-G solvation = -81.248735 kcal Electronic energy + Delta-G solvation = -21233.397916 eV Core-core repulsion = 17973.182471 eV Total energy + Delta-G solvation = -3260.215445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62158 -39.85896 -37.83441 -36.06972 -34.58843 -33.36017 -31.79162 -30.85728 -29.81650 -27.65771 -27.17003 -24.54292 -23.30648 -21.94078 -20.63492 -19.94181 -18.66547 -18.30816 -17.40491 -17.02099 -16.87851 -16.44394 -16.12882 -15.93594 -15.34362 -15.28808 -14.88252 -14.72993 -14.45936 -14.10712 -14.00447 -13.64112 -13.31467 -13.19156 -13.11496 -13.01893 -12.86165 -12.69191 -12.57709 -11.97380 -11.74096 -11.64602 -11.14073 -11.11901 -10.52769 -10.28779 -10.18950 -9.79526 -9.59697 -8.65682 -8.34935 -6.12404 0.42337 0.52432 1.26514 1.43408 1.45996 1.56177 1.63471 2.23582 2.28664 2.90808 2.98973 3.21258 3.30678 3.48819 3.92576 3.93997 4.10532 4.15128 4.28724 4.29075 4.39624 4.45454 4.49769 4.61634 4.63606 4.69538 4.74234 4.87451 5.05697 5.16128 5.22515 5.41036 5.42491 5.57953 5.64665 5.71477 6.11292 6.19149 6.50613 6.82825 7.06270 7.24245 8.73947 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.003346 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.401378 B = 8365.828557 C = 8818.031896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.221 3.779 3 C 0.064 3.936 4 O -0.576 6.576 5 N -0.703 5.703 6 C 0.541 3.459 7 O -0.550 6.550 8 C -0.132 4.132 9 S -0.139 6.139 10 C -0.551 4.551 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.083 4.083 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.110 4.110 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.391 0.609 30 H 0.408 0.592 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.272 0.728 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -4.107 -25.010 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.135 3.865 3 C -0.014 4.014 4 O -0.383 6.383 5 N -0.357 5.357 6 C 0.327 3.673 7 O -0.428 6.428 8 C -0.283 4.283 9 S 0.088 5.912 10 C -0.699 4.699 11 H 0.098 0.902 12 C -0.190 4.190 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.084 4.084 19 C -0.150 4.150 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.128 4.128 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.240 0.760 30 H 0.246 0.754 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.402 -3.013 -24.707 25.006 hybrid contribution 1.323 -1.121 1.045 2.024 sum 3.725 -4.134 -23.663 24.308 Atomic orbital electron populations 1.22131 0.92434 1.03279 1.03570 1.19226 0.94088 0.90699 0.82526 1.22600 0.81757 0.95926 1.01136 1.86446 1.19118 1.34981 1.97736 1.45925 1.53756 1.32266 1.03799 1.19889 0.79292 0.83786 0.84325 1.90615 1.38487 1.26978 1.86751 1.23387 1.04908 1.03878 0.96151 1.85438 1.68803 1.41053 0.95912 1.23191 1.37483 1.15866 0.93315 0.90170 1.26104 0.95323 0.96981 1.00584 1.70166 1.37819 1.27787 1.18894 0.85024 0.78798 0.78184 0.76120 1.18755 1.20253 1.18670 1.19630 1.00511 0.94223 0.94020 1.21110 1.00513 0.93807 0.99544 1.21392 0.98827 1.01014 0.92759 1.21512 0.99552 0.94569 0.98720 1.21432 0.98776 0.95148 0.98597 1.21128 0.99040 1.00280 0.92368 0.91484 0.92175 0.89522 0.90513 0.93693 0.75970 0.75403 0.87564 0.88052 0.91949 0.85782 0.84119 0.83787 0.83797 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 8.38 71.98 0.60 -3.30 16 2 C 0.22 5.53 0.68 2.86 0.00 5.53 16 3 C 0.06 1.62 5.13 71.98 0.37 1.99 16 4 O -0.58 -14.16 12.91 -148.98 -1.92 -16.08 16 5 N -0.70 -20.05 4.72 -426.33 -2.01 -22.07 16 6 C 0.54 20.45 7.27 87.66 0.64 21.08 16 7 O -0.55 -24.47 12.07 -3.01 -0.04 -24.51 16 8 C -0.13 -5.44 6.16 71.24 0.44 -5.00 16 9 S -0.14 -7.78 20.57 -56.49 -1.16 -8.95 16 10 C -0.55 -31.88 9.50 67.96 0.65 -31.24 16 11 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 12 C 0.01 0.86 5.49 84.86 0.47 1.33 16 13 N -0.91 -56.14 13.22 21.65 0.29 -55.86 16 14 Si 1.00 43.95 29.55 68.60 2.03 45.97 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 18 C -0.08 -1.76 4.51 -19.86 -0.09 -1.85 16 19 C -0.13 -2.55 8.96 22.27 0.20 -2.35 16 20 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 21 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 22 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 23 C -0.11 -1.99 8.92 22.27 0.20 -1.80 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.90 6.17 -2.39 -0.01 1.88 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.46 6.51 -2.39 -0.02 1.45 16 28 H 0.04 1.44 6.17 -2.39 -0.01 1.42 16 29 H 0.39 6.53 9.12 -74.05 -0.68 5.85 16 30 H 0.41 9.89 6.67 -92.71 -0.62 9.27 16 31 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 32 H 0.10 3.91 8.14 -2.39 -0.02 3.90 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.12 2.24 6.71 -2.91 -0.02 2.22 16 35 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.14 1.30 8.06 -2.91 -0.02 1.27 16 37 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.13 2.04 6.17 -2.91 -0.02 2.02 16 Total: -1.00 -76.24 329.87 1.12 -75.11 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.20 Total: 26.86 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 4.14 Total: -20.49 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -1.73 Total: -77.92 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -1.96 Total: -40.59 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.16 Total: -8.95 kcal Total: -76.24 1.12 -75.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134393087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -76.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds