Wall clock time and date at job start Tue Mar 31 2020 07:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99915 * 2 1 4 4 C 1.38830 * 120.01442 * 0.02604 * 3 2 1 5 5 C 1.38193 * 120.10086 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.13643 * 359.72148 * 5 4 3 7 7 C 1.38991 * 120.02828 * 0.55941 * 6 5 4 8 8 S 1.76197 * 120.05398 * 179.71834 * 7 6 5 9 9 C 1.81399 * 103.00004 * 359.72171 * 8 7 6 10 10 C 1.50697 * 109.47472 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38554 * 120.01315 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47094 * 59.99472 * 1 2 3 26 26 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47224 * 299.99292 * 1 2 3 28 28 H 1.08000 * 119.95075 * 359.95440 * 4 3 2 29 29 H 1.08007 * 119.93009 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.98460 * 180.27086 * 6 5 4 31 31 H 1.09001 * 109.46966 * 59.99657 * 9 8 7 32 32 H 1.09001 * 109.47236 * 300.00401 * 9 8 7 33 33 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 34 34 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 35 35 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 36 36 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 37 37 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 38 38 H 1.08000 * 120.06593 * 0.05072 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0069 7 6 4.0569 2.5230 0.0004 8 16 5.8161 2.6214 0.0003 9 6 6.1249 4.4089 0.0011 10 6 7.6104 4.6621 0.0005 11 8 8.3847 3.7287 0.0001 12 7 8.0786 5.9259 0.0004 13 6 9.5228 6.1721 0.0003 14 1 10.0224 5.4033 0.5897 15 6 10.0466 6.1339 -1.4368 16 6 9.8017 7.5259 0.6007 17 1 8.9827 8.1783 0.8655 18 6 11.1023 7.9317 0.8119 19 7 11.3663 9.1990 1.0435 20 14 12.4903 6.6826 0.7615 21 1 12.7098 6.1314 2.1229 22 1 12.1311 5.5805 -0.1667 23 1 13.7336 7.3428 0.2884 24 6 3.4296 1.2837 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2116 2.3182 0.0002 29 1 1.3249 4.5119 0.0019 30 1 3.7810 4.6496 0.0117 31 1 5.6804 4.8540 0.8913 32 1 5.6803 4.8548 -0.8886 33 1 7.4594 6.6726 0.0011 34 1 9.9491 5.1228 -1.8321 35 1 9.4681 6.8222 -2.0527 36 1 11.0958 6.4291 -1.4490 37 1 10.6567 9.8588 0.9967 38 1 4.0191 0.3788 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171726614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:54 Heat of formation + Delta-G solvation = -49.739881 kcal Electronic energy + Delta-G solvation = -20194.999712 eV Core-core repulsion = 16936.150594 eV Total energy + Delta-G solvation = -3258.849119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29607 -39.11799 -37.61298 -35.09132 -32.59054 -31.39938 -31.18777 -30.25003 -28.55293 -27.58991 -24.86875 -23.16554 -22.44936 -21.24216 -19.72601 -18.88986 -17.86692 -16.72406 -16.60293 -16.30003 -16.06762 -16.04564 -15.38477 -15.04174 -14.18766 -14.17496 -13.77303 -13.59480 -13.30421 -13.06299 -12.81330 -12.69192 -12.43987 -12.17586 -11.87973 -11.64335 -11.55902 -11.41073 -11.34630 -10.58205 -10.19884 -10.18207 -9.89782 -9.72253 -9.44046 -9.08274 -8.59171 -8.46636 -8.29077 -7.47291 -6.61706 -4.27506 0.94026 1.15980 1.24443 2.30625 2.99348 3.01060 3.39257 3.42484 3.43452 3.57394 3.79348 4.40633 4.48121 4.72237 4.73826 4.77613 4.87038 4.94910 5.03402 5.07916 5.12954 5.13663 5.22997 5.29286 5.61986 5.94092 6.03824 6.13529 6.31640 6.33201 6.47866 6.61016 6.89081 7.07865 7.18474 7.27888 7.56640 8.18116 8.31287 8.60359 8.81827 9.41391 10.77870 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.044031 B = 0.002663 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.767222 B =10510.323938 C =10909.752141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.144 3.856 4 C -0.220 4.220 5 C -0.059 4.059 6 C -0.175 4.175 7 C -0.060 4.060 8 S -0.018 6.018 9 C -0.153 4.153 10 C 0.520 3.480 11 O -0.537 6.537 12 N -0.695 5.695 13 C 0.242 3.758 14 H 0.045 0.955 15 C -0.155 4.155 16 C -0.618 4.618 17 H 0.062 0.938 18 C 0.041 3.959 19 N -0.897 5.897 20 Si 1.038 2.962 21 H -0.283 1.283 22 H -0.266 1.266 23 H -0.283 1.283 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.395 0.605 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.270 0.730 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.455 -12.880 -3.167 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.097 3.903 4 C -0.241 4.241 5 C -0.079 4.079 6 C -0.199 4.199 7 C -0.174 4.174 8 S 0.228 5.772 9 C -0.304 4.304 10 C 0.302 3.698 11 O -0.415 6.415 12 N -0.343 5.343 13 C 0.139 3.861 14 H 0.063 0.937 15 C -0.214 4.214 16 C -0.656 4.656 17 H 0.080 0.920 18 C -0.166 4.166 19 N -0.530 5.530 20 Si 0.865 3.135 21 H -0.209 1.209 22 H -0.192 1.192 23 H -0.209 1.209 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.228 0.772 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.171 -14.692 -2.950 24.333 hybrid contribution -3.405 1.985 -0.182 3.945 sum -22.576 -12.708 -3.132 26.096 Atomic orbital electron populations 1.23065 0.78294 1.03977 1.01402 1.86078 1.21436 1.26849 1.88622 1.18812 0.91783 0.84199 0.95473 1.21202 0.99946 0.92317 1.10684 1.20832 0.94031 0.97096 0.95940 1.21133 0.94431 0.97115 1.07233 1.21973 0.99110 0.95534 1.00747 1.86310 0.94973 1.05189 1.90734 1.23942 1.00238 0.98735 1.07502 1.19467 0.87879 0.84529 0.77922 1.90708 1.57807 1.42526 1.50471 1.46218 1.10506 1.05563 1.72049 1.19129 0.75650 0.97919 0.93412 0.93742 1.22451 1.01207 0.98748 0.98984 1.22075 0.95165 1.00659 1.47697 0.91990 1.25694 0.99266 0.98998 0.92651 1.70829 1.36295 1.00995 1.44883 0.84187 0.75823 0.75743 0.77768 1.20943 1.19153 1.20902 1.19851 0.91328 0.96981 1.07925 0.92597 0.88192 0.92581 0.85422 0.85482 0.85631 0.86735 0.86822 0.77232 0.95014 0.93749 0.92278 0.92031 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.18 10.49 -19.42 -0.20 -3.38 16 3 C 0.14 1.58 6.68 -39.25 -0.26 1.32 16 4 C -0.22 -2.03 9.04 -39.38 -0.36 -2.39 16 5 C -0.06 -0.55 10.03 -39.64 -0.40 -0.95 16 6 C -0.17 -1.89 9.36 -39.34 -0.37 -2.25 16 7 C -0.06 -0.75 6.11 -39.06 -0.24 -0.99 16 8 S -0.02 -0.25 21.06 -107.50 -2.26 -2.52 16 9 C -0.15 -2.05 4.82 36.00 0.17 -1.88 16 10 C 0.52 9.61 7.81 -10.99 -0.09 9.52 16 11 O -0.54 -11.99 15.53 5.56 0.09 -11.90 16 12 N -0.70 -13.50 5.07 -54.93 -0.28 -13.78 16 13 C 0.24 5.71 2.11 -69.08 -0.15 5.56 16 14 H 0.04 1.14 6.21 -51.93 -0.32 0.82 16 15 C -0.16 -3.45 8.76 37.16 0.33 -3.13 16 16 C -0.62 -16.40 9.02 -34.44 -0.31 -16.71 16 17 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 18 C 0.04 1.13 5.33 -17.82 -0.09 1.03 16 19 N -0.90 -26.44 13.69 55.43 0.76 -25.68 16 20 Si 1.04 24.76 26.17 -169.99 -4.45 20.32 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.01 5.53 56.52 0.31 -5.70 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.14 -1.65 9.73 -39.22 -0.38 -2.03 16 25 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 29 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 30 H 0.13 1.17 5.87 -52.49 -0.31 0.87 16 31 H 0.11 1.30 7.73 -51.92 -0.40 0.90 16 32 H 0.11 1.25 7.76 -51.92 -0.40 0.84 16 33 H 0.39 6.62 8.53 -40.82 -0.35 6.27 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.33 5.06 -51.93 -0.26 1.07 16 37 H 0.27 7.84 8.73 -40.82 -0.36 7.49 16 38 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -32.37 330.37 -7.47 -39.83 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.94 Total: 3.87 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.15 Total: -11.73 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.48 Total: -39.46 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.12 Total: -15.29 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -4.45 Total: 20.32 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.26 Total: -2.52 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.37 -7.47 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.906 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds