Wall clock time and date at job start Tue Mar 31 2020 07:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99915 * 2 1 4 4 C 1.38830 * 120.01442 * 0.02604 * 3 2 1 5 5 C 1.38193 * 120.10086 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.13643 * 359.72148 * 5 4 3 7 7 C 1.38991 * 120.02828 * 0.55941 * 6 5 4 8 8 S 1.76197 * 120.05398 * 179.71834 * 7 6 5 9 9 C 1.81399 * 103.00004 * 359.72171 * 8 7 6 10 10 C 1.50697 * 109.47472 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99927 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00282 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00000 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47185 * 325.00421 * 13 12 10 15 15 C 1.53003 * 109.46991 * 85.00701 * 13 12 10 16 16 C 1.50702 * 109.47119 * 205.00085 * 13 12 10 17 17 H 1.08007 * 119.99981 * 354.48131 * 16 13 12 18 18 C 1.37872 * 120.00181 * 174.48618 * 16 13 12 19 19 N 1.31507 * 120.00188 * 164.58940 * 18 16 13 20 20 Si 1.86797 * 119.99894 * 344.86064 * 18 16 13 21 21 H 1.48501 * 109.47054 * 269.72685 * 20 18 16 22 22 H 1.48506 * 109.47355 * 29.72399 * 20 18 16 23 23 H 1.48500 * 109.47516 * 149.72369 * 20 18 16 24 24 C 1.38554 * 120.01315 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47094 * 59.99472 * 1 2 3 26 26 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47224 * 299.99292 * 1 2 3 28 28 H 1.08000 * 119.95075 * 359.95440 * 4 3 2 29 29 H 1.08007 * 119.93009 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.98460 * 180.27086 * 6 5 4 31 31 H 1.09001 * 109.46966 * 59.99657 * 9 8 7 32 32 H 1.09001 * 109.47236 * 300.00401 * 9 8 7 33 33 H 0.97002 * 120.00007 * 0.02562 * 12 10 9 34 34 H 1.09005 * 109.46269 * 293.54281 * 15 13 12 35 35 H 1.08992 * 109.47288 * 53.53833 * 15 13 12 36 36 H 1.08997 * 109.47143 * 173.55043 * 15 13 12 37 37 H 0.97004 * 120.00365 * 355.18112 * 19 18 16 38 38 H 1.08000 * 120.06593 * 0.05072 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2948 3.6853 0.0069 7 6 4.0569 2.5230 0.0004 8 16 5.8161 2.6214 0.0003 9 6 6.1249 4.4089 0.0011 10 6 7.6104 4.6621 0.0005 11 8 8.3847 3.7287 0.0001 12 7 8.0786 5.9259 0.0004 13 6 9.5228 6.1721 0.0003 14 1 10.0224 5.4033 0.5897 15 6 10.0466 6.1339 -1.4368 16 6 9.8017 7.5259 0.6007 17 1 8.9827 8.1783 0.8655 18 6 11.1023 7.9317 0.8119 19 7 11.3663 9.1990 1.0435 20 14 12.4903 6.6826 0.7615 21 1 12.7098 6.1314 2.1229 22 1 12.1311 5.5805 -0.1667 23 1 13.7336 7.3428 0.2884 24 6 3.4296 1.2837 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.2116 2.3182 0.0002 29 1 1.3249 4.5119 0.0019 30 1 3.7810 4.6496 0.0117 31 1 5.6804 4.8540 0.8913 32 1 5.6803 4.8548 -0.8886 33 1 7.4594 6.6726 0.0011 34 1 9.9491 5.1228 -1.8321 35 1 9.4681 6.8222 -2.0527 36 1 11.0958 6.4291 -1.4490 37 1 10.6567 9.8588 0.9967 38 1 4.0191 0.3788 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171726614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:53 Heat of formation + Delta-G solvation = -71.524410 kcal Electronic energy + Delta-G solvation = -20195.944361 eV Core-core repulsion = 16936.150594 eV Total energy + Delta-G solvation = -3259.793767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01505 -40.68343 -38.33777 -36.89877 -34.52954 -32.57921 -32.15729 -31.31379 -29.89057 -28.12359 -26.87300 -24.03708 -23.21432 -22.90268 -21.38035 -19.98535 -19.49287 -18.08584 -17.65852 -17.22154 -16.99881 -16.75121 -16.66292 -16.45718 -15.51135 -15.17368 -14.89711 -14.73985 -14.56979 -14.54210 -14.27022 -14.07609 -13.71819 -13.41048 -13.25474 -13.03404 -12.63677 -12.47893 -12.16961 -12.07297 -12.06411 -11.53290 -11.16208 -11.12539 -11.01915 -10.70824 -10.57383 -9.98972 -9.36342 -8.80065 -8.49259 -6.45833 0.14243 0.20378 0.38105 1.31761 1.49070 1.49448 1.57425 1.70611 2.33428 2.39883 2.43247 2.64850 3.00556 3.71438 3.81001 3.94956 4.05755 4.08328 4.20893 4.24853 4.41279 4.45637 4.49114 4.52624 4.70069 4.73498 4.76857 4.85246 5.07052 5.15938 5.27045 5.39065 5.41396 5.54964 5.62024 5.62079 6.00429 6.40334 6.50628 6.69819 7.22841 7.32953 8.59175 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.044031 B = 0.002663 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.767222 B =10510.323938 C =10909.752141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.136 3.864 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.182 4.182 7 C -0.065 4.065 8 S -0.073 6.073 9 C -0.133 4.133 10 C 0.519 3.481 11 O -0.577 6.577 12 N -0.694 5.694 13 C 0.244 3.756 14 H 0.025 0.975 15 C -0.150 4.150 16 C -0.611 4.611 17 H 0.044 0.956 18 C -0.004 4.004 19 N -0.928 5.928 20 Si 1.071 2.929 21 H -0.278 1.278 22 H -0.249 1.249 23 H -0.279 1.279 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.408 0.592 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.260 0.740 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 -13.160 -3.682 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.089 3.911 4 C -0.235 4.235 5 C -0.077 4.077 6 C -0.206 4.206 7 C -0.179 4.179 8 S 0.171 5.829 9 C -0.283 4.283 10 C 0.304 3.696 11 O -0.458 6.458 12 N -0.344 5.344 13 C 0.139 3.861 14 H 0.043 0.957 15 C -0.208 4.208 16 C -0.649 4.649 17 H 0.062 0.938 18 C -0.205 4.205 19 N -0.563 5.563 20 Si 0.893 3.107 21 H -0.204 1.204 22 H -0.173 1.173 23 H -0.205 1.205 24 C -0.183 4.183 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.244 0.756 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.840 -14.972 -3.470 26.706 hybrid contribution -2.807 2.017 -0.004 3.456 sum -24.647 -12.956 -3.473 28.061 Atomic orbital electron populations 1.23387 0.76037 1.05678 1.02553 1.86057 1.23820 1.26739 1.88507 1.18931 0.91489 0.85264 0.95453 1.21577 1.01412 0.91620 1.08856 1.21236 0.93623 0.98347 0.94455 1.21412 0.95259 0.97016 1.06881 1.21803 0.97216 0.96374 1.02475 1.86502 0.98057 1.06564 1.91767 1.23771 0.96206 0.98146 1.10210 1.20144 0.89913 0.83291 0.76283 1.90693 1.59557 1.43617 1.51907 1.45998 1.09134 1.06799 1.72462 1.18826 0.78191 0.95362 0.93704 0.95733 1.22345 1.00991 0.99432 0.98069 1.22233 0.94488 1.01532 1.46607 0.93752 1.26787 1.01879 0.99565 0.92307 1.70925 1.36127 1.01759 1.47502 0.83756 0.73894 0.74605 0.78453 1.20392 1.17300 1.20496 1.19932 0.92355 0.96807 1.09244 0.91334 0.86455 0.91376 0.82524 0.82285 0.84107 0.84163 0.83741 0.75614 0.94357 0.92621 0.92830 0.93081 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.34 10.49 -92.42 -0.97 -7.31 16 3 C 0.14 2.77 6.68 22.49 0.15 2.92 16 4 C -0.21 -3.27 9.04 22.40 0.20 -3.06 16 5 C -0.06 -0.85 10.03 22.23 0.22 -0.62 16 6 C -0.18 -3.42 9.36 22.43 0.21 -3.21 16 7 C -0.07 -1.56 6.11 22.61 0.14 -1.42 16 8 S -0.07 -2.08 21.06 -56.49 -1.19 -3.27 16 9 C -0.13 -3.28 4.82 71.23 0.34 -2.93 16 10 C 0.52 18.54 7.81 87.66 0.68 19.23 16 11 O -0.58 -25.64 15.53 -3.03 -0.05 -25.69 16 12 N -0.69 -26.05 5.07 -446.10 -2.26 -28.31 16 13 C 0.24 11.31 2.11 44.25 0.09 11.41 16 14 H 0.02 1.26 6.21 -2.39 -0.01 1.24 16 15 C -0.15 -6.45 8.76 71.98 0.63 -5.82 16 16 C -0.61 -32.34 9.02 25.60 0.23 -32.11 16 17 H 0.04 2.46 7.96 -2.91 -0.02 2.44 16 18 C 0.00 -0.25 5.33 84.65 0.45 0.20 16 19 N -0.93 -55.32 13.69 21.44 0.29 -55.03 16 20 Si 1.07 49.77 26.17 68.60 1.80 51.57 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.25 -10.78 5.53 99.48 0.55 -10.23 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.16 -3.83 9.73 22.50 0.22 -3.61 16 25 H 0.07 0.43 7.66 -2.39 -0.02 0.42 16 26 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 28 H 0.16 1.41 6.29 -2.91 -0.02 1.39 16 29 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.14 2.12 5.87 -2.91 -0.02 2.10 16 31 H 0.14 2.76 7.73 -2.39 -0.02 2.74 16 32 H 0.14 2.69 7.76 -2.39 -0.02 2.67 16 33 H 0.41 12.96 8.53 -92.71 -0.79 12.17 16 34 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 2.34 5.06 -2.39 -0.01 2.33 16 37 H 0.26 15.44 8.73 -92.71 -0.81 14.64 16 38 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -71.09 330.37 2.41 -68.68 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.10 Total: 17.13 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.69 Total: -17.77 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.97 Total: -83.34 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.02 Total: -33.00 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 1.80 Total: 51.57 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -1.19 Total: -3.27 kcal Total: -71.09 2.41 -68.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.842 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds