Wall clock time and date at job start Tue Mar 31 2020 07:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 116.99841 * 2 1 4 4 C 1.38821 * 120.01612 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.10399 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.13694 * 359.72064 * 5 4 3 7 7 C 1.38999 * 120.02488 * 0.55564 * 6 5 4 8 8 S 1.76206 * 120.05089 * 179.71950 * 7 6 5 9 9 C 1.81401 * 102.99795 * 359.72558 * 8 7 6 10 10 C 1.50709 * 109.46777 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38555 * 120.01474 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.46687 * 60.00726 * 1 2 3 26 26 H 1.08997 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47469 * 300.00347 * 1 2 3 28 28 H 1.08003 * 119.95257 * 359.95926 * 4 3 2 29 29 H 1.08007 * 119.93305 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99091 * 180.27754 * 6 5 4 31 31 H 1.08998 * 109.46858 * 60.00455 * 9 8 7 32 32 H 1.08995 * 109.47514 * 300.00092 * 9 8 7 33 33 H 0.96997 * 119.99849 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.06809 * 0.03849 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2947 3.6854 0.0069 7 6 4.0569 2.5230 0.0006 8 16 5.8162 2.6214 0.0005 9 6 6.1248 4.4090 0.0013 10 6 7.6105 4.6622 0.0020 11 8 8.3847 3.7286 0.0015 12 7 8.0787 5.9261 0.0032 13 6 9.5228 6.1722 0.0033 14 1 10.0224 5.4039 -0.5869 15 6 10.0468 6.1326 1.4402 16 6 9.8016 7.5265 -0.5959 17 1 8.9848 8.1422 -0.9426 18 6 11.0996 7.9793 -0.7025 19 7 12.0943 7.2294 -0.2809 20 14 11.4451 9.6578 -1.4459 21 1 11.6357 9.5201 -2.9122 22 1 10.2988 10.5631 -1.1786 23 1 12.6757 10.2245 -0.8379 24 6 3.4296 1.2838 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2116 2.3182 0.0003 29 1 1.3249 4.5118 0.0011 30 1 3.7811 4.6497 0.0118 31 1 5.6804 4.8540 0.8916 32 1 5.6803 4.8549 -0.8884 33 1 7.4594 6.6726 0.0040 34 1 9.5472 6.9008 2.0305 35 1 9.8451 5.1530 1.8736 36 1 11.1213 6.3152 1.4403 37 1 13.0075 7.5478 -0.3563 38 1 4.0191 0.3789 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171726619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:56 Heat of formation + Delta-G solvation = -50.742387 kcal Electronic energy + Delta-G solvation = -20125.020260 eV Core-core repulsion = 16866.127670 eV Total energy + Delta-G solvation = -3258.892591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25249 -38.92137 -37.56779 -34.89319 -32.52003 -31.35063 -30.99067 -29.96216 -28.07954 -27.53466 -25.29368 -23.11650 -22.40271 -21.36055 -19.60620 -18.82125 -17.33882 -16.64085 -16.26415 -16.03694 -16.03030 -15.85382 -15.20810 -15.06736 -14.22740 -14.11823 -13.99128 -13.52528 -13.24847 -12.99429 -12.64554 -12.41313 -12.39768 -11.84326 -11.69162 -11.51681 -11.32755 -11.09542 -11.00826 -10.77729 -10.35108 -10.27618 -10.11744 -9.84436 -9.26856 -9.10533 -8.60135 -8.54498 -8.03744 -7.40141 -6.16289 -4.26122 0.99104 1.20677 1.32818 2.38994 3.03384 3.17686 3.22342 3.29012 3.30552 3.47276 3.93497 4.32851 4.52213 4.76394 4.77380 4.80667 4.92514 5.05094 5.11340 5.14497 5.16564 5.17938 5.29695 5.41266 5.66758 5.99105 6.08869 6.18049 6.36305 6.77450 6.91257 7.09174 7.12168 7.35145 7.47110 7.63126 7.85078 8.09678 8.52521 8.70024 8.97119 9.41126 10.89677 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041724 B = 0.002555 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.922098 B =10957.742443 C =11394.916671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.144 3.856 4 C -0.221 4.221 5 C -0.059 4.059 6 C -0.175 4.175 7 C -0.060 4.060 8 S -0.017 6.017 9 C -0.153 4.153 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.701 5.701 13 C 0.265 3.735 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.285 1.285 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.390 0.610 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.091 0.909 37 H 0.265 0.735 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.149 -7.890 1.252 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.097 3.903 4 C -0.243 4.243 5 C -0.079 4.079 6 C -0.199 4.199 7 C -0.173 4.173 8 S 0.228 5.772 9 C -0.304 4.304 10 C 0.301 3.699 11 O -0.414 6.414 12 N -0.350 5.350 13 C 0.164 3.836 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.210 1.210 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.223 0.777 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.278 -9.553 1.272 23.358 hybrid contribution -1.432 2.576 -0.371 2.971 sum -22.710 -6.977 0.900 23.774 Atomic orbital electron populations 1.23059 0.78343 1.03942 1.01380 1.86078 1.21398 1.26882 1.88646 1.18811 0.91790 0.84174 0.95515 1.21187 0.99902 0.92332 1.10833 1.20825 0.94043 0.97060 0.95998 1.21140 0.94400 0.97146 1.07246 1.22005 0.99254 0.95508 1.00572 1.86351 0.94738 1.05481 1.90591 1.23976 1.00639 0.98486 1.07321 1.19411 0.87638 0.84690 0.78207 1.90717 1.57743 1.42520 1.50385 1.46465 1.11240 1.05319 1.71949 1.18813 0.73533 0.97115 0.94186 0.93169 1.22087 1.04515 0.96828 0.97221 1.21188 0.92908 1.01603 1.41693 0.92027 1.24899 0.95927 0.97790 0.95122 1.69903 0.99431 1.36977 1.45615 0.86423 0.77873 0.83363 0.79285 1.20520 1.19860 1.21030 1.19853 0.91309 0.97010 1.07956 0.92605 0.88222 0.92615 0.85475 0.85526 0.85604 0.86944 0.86878 0.77723 0.95395 0.96521 0.89008 0.92487 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.49 -19.44 -0.20 -3.47 16 3 C 0.14 1.62 6.68 -39.25 -0.26 1.36 16 4 C -0.22 -2.10 9.04 -39.38 -0.36 -2.45 16 5 C -0.06 -0.56 10.03 -39.64 -0.40 -0.96 16 6 C -0.17 -1.94 9.36 -39.34 -0.37 -2.31 16 7 C -0.06 -0.77 6.11 -39.06 -0.24 -1.01 16 8 S -0.02 -0.26 21.06 -107.50 -2.26 -2.52 16 9 C -0.15 -2.13 4.82 36.01 0.17 -1.96 16 10 C 0.52 10.05 7.81 -10.98 -0.09 9.97 16 11 O -0.54 -12.68 15.53 5.56 0.09 -12.60 16 12 N -0.70 -14.09 5.07 -54.93 -0.28 -14.36 16 13 C 0.26 6.64 2.56 -69.09 -0.18 6.46 16 14 H 0.05 1.46 7.58 -51.92 -0.39 1.06 16 15 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 16 C -0.54 -13.94 8.73 -34.44 -0.30 -14.24 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 20 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.14 -1.71 9.73 -39.22 -0.38 -2.09 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 28 H 0.13 0.88 6.29 -52.48 -0.33 0.55 16 29 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.13 1.21 5.87 -52.48 -0.31 0.90 16 31 H 0.11 1.29 7.73 -51.92 -0.40 0.89 16 32 H 0.11 1.32 7.76 -51.93 -0.40 0.92 16 33 H 0.39 6.57 8.54 -40.82 -0.35 6.23 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -31.63 335.33 -8.10 -39.73 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.95 Total: 4.52 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.15 Total: -7.71 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.35 Total: -38.37 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.12 Total: -16.07 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -0.26 SS G_CDS: -2.26 Total: -2.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.63 -8.10 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.011 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds