Wall clock time and date at job start Tue Mar 31 2020 07:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35904 * 116.99841 * 2 1 4 4 C 1.38821 * 120.01612 * 0.02562 * 3 2 1 5 5 C 1.38189 * 120.10399 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.13694 * 359.72064 * 5 4 3 7 7 C 1.38999 * 120.02488 * 0.55564 * 6 5 4 8 8 S 1.76206 * 120.05089 * 179.71950 * 7 6 5 9 9 C 1.81401 * 102.99795 * 359.72558 * 8 7 6 10 10 C 1.50709 * 109.46777 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99688 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38555 * 120.01474 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.46687 * 60.00726 * 1 2 3 26 26 H 1.08997 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47469 * 300.00347 * 1 2 3 28 28 H 1.08003 * 119.95257 * 359.95926 * 4 3 2 29 29 H 1.08007 * 119.93305 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99091 * 180.27754 * 6 5 4 31 31 H 1.08998 * 109.46858 * 60.00455 * 9 8 7 32 32 H 1.08995 * 109.47514 * 300.00092 * 9 8 7 33 33 H 0.96997 * 119.99849 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.08003 * 120.06809 * 0.03849 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2901 2.3754 0.0005 5 6 1.9156 3.6076 0.0011 6 6 3.2947 3.6854 0.0069 7 6 4.0569 2.5230 0.0006 8 16 5.8162 2.6214 0.0005 9 6 6.1248 4.4090 0.0013 10 6 7.6105 4.6622 0.0020 11 8 8.3847 3.7286 0.0015 12 7 8.0787 5.9261 0.0032 13 6 9.5228 6.1722 0.0033 14 1 10.0224 5.4039 -0.5869 15 6 10.0468 6.1326 1.4402 16 6 9.8016 7.5265 -0.5959 17 1 8.9848 8.1422 -0.9426 18 6 11.0996 7.9793 -0.7025 19 7 12.0943 7.2294 -0.2809 20 14 11.4451 9.6578 -1.4459 21 1 11.6357 9.5201 -2.9122 22 1 10.2988 10.5631 -1.1786 23 1 12.6757 10.2245 -0.8379 24 6 3.4296 1.2838 0.0005 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2116 2.3182 0.0003 29 1 1.3249 4.5118 0.0011 30 1 3.7811 4.6497 0.0118 31 1 5.6804 4.8540 0.8916 32 1 5.6803 4.8549 -0.8884 33 1 7.4594 6.6726 0.0040 34 1 9.5472 6.9008 2.0305 35 1 9.8451 5.1530 1.8736 36 1 11.1213 6.3152 1.4403 37 1 13.0075 7.5478 -0.3563 38 1 4.0191 0.3789 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171726619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:56 Heat of formation + Delta-G solvation = -71.194412 kcal Electronic energy + Delta-G solvation = -20125.907127 eV Core-core repulsion = 16866.127670 eV Total energy + Delta-G solvation = -3259.779457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99676 -40.57716 -38.31857 -36.77158 -34.39554 -32.27333 -32.13273 -31.12779 -29.60819 -28.10541 -27.34033 -24.03597 -23.22582 -23.05137 -21.31995 -19.72088 -18.90933 -17.74679 -17.50980 -17.20227 -16.98268 -16.77512 -16.66879 -16.50815 -15.80878 -15.08789 -14.83552 -14.67528 -14.48564 -14.30140 -14.19802 -13.77276 -13.51470 -13.11010 -12.93443 -12.86908 -12.76677 -12.56546 -12.26940 -12.15047 -12.12791 -12.03747 -11.12973 -11.12227 -10.93067 -10.68591 -10.60042 -9.83312 -9.34349 -8.47728 -8.17850 -6.35559 0.16619 0.23788 0.40368 1.35617 1.46060 1.46477 1.57124 1.65739 2.32254 2.39798 2.55184 2.67150 3.12908 3.81885 3.83170 3.99922 4.08340 4.11018 4.23615 4.27648 4.42615 4.47425 4.54712 4.74283 4.74769 4.86921 4.91554 5.07978 5.18631 5.29265 5.40745 5.41378 5.57428 5.64601 5.66211 5.87086 6.08217 6.42262 6.71528 6.84161 7.29956 7.46402 8.88524 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.041724 B = 0.002555 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.922098 B =10957.742443 C =11394.916671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.136 3.864 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.181 4.181 7 C -0.065 4.065 8 S -0.081 6.081 9 C -0.129 4.129 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.696 5.696 13 C 0.271 3.729 14 H -0.001 1.001 15 C -0.135 4.135 16 C -0.546 4.546 17 H 0.077 0.923 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.974 3.026 21 H -0.279 1.279 22 H -0.258 1.258 23 H -0.285 1.285 24 C -0.160 4.160 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.410 0.590 34 H 0.043 0.957 35 H 0.012 0.988 36 H 0.066 0.934 37 H 0.265 0.735 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.689 -5.792 1.052 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.088 3.912 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.205 4.205 7 C -0.178 4.178 8 S 0.163 5.837 9 C -0.279 4.279 10 C 0.299 3.701 11 O -0.466 6.466 12 N -0.345 5.345 13 C 0.167 3.833 14 H 0.017 0.983 15 C -0.194 4.194 16 C -0.584 4.584 17 H 0.095 0.905 18 C -0.188 4.188 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.205 1.205 22 H -0.181 1.181 23 H -0.211 1.211 24 C -0.185 4.185 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.246 0.754 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.893 -7.445 1.074 26.004 hybrid contribution -0.469 1.799 -0.305 1.884 sum -25.361 -5.646 0.768 25.994 Atomic orbital electron populations 1.23386 0.76032 1.05661 1.02572 1.86057 1.23836 1.26784 1.88531 1.18923 0.91431 0.85294 0.95504 1.21576 1.01405 0.91606 1.08882 1.21244 0.93576 0.98354 0.94378 1.21432 0.95255 0.97006 1.06783 1.21807 0.97067 0.96447 1.02463 1.86601 0.98243 1.07120 1.91737 1.23773 0.96105 0.97772 1.10298 1.20214 0.89890 0.83514 0.76443 1.90701 1.59817 1.43939 1.52122 1.46146 1.09621 1.06619 1.72149 1.18388 0.76083 0.95428 0.93368 0.98344 1.21909 1.03057 0.97001 0.97411 1.21535 0.93514 1.01844 1.41477 0.90485 1.25835 0.95815 1.01633 0.95512 1.70060 0.99806 1.38916 1.46830 0.85315 0.77972 0.78800 0.78058 1.20461 1.18148 1.21121 1.19923 0.92398 0.96786 1.09367 0.91336 0.86491 0.91320 0.82476 0.82112 0.83928 0.83676 0.83859 0.75447 0.93772 0.96937 0.91496 0.92556 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -6.59 10.49 -92.47 -0.97 -7.56 16 3 C 0.14 2.86 6.68 22.49 0.15 3.02 16 4 C -0.21 -3.34 9.04 22.40 0.20 -3.14 16 5 C -0.06 -0.84 10.03 22.23 0.22 -0.62 16 6 C -0.18 -3.48 9.36 22.43 0.21 -3.27 16 7 C -0.06 -1.61 6.11 22.61 0.14 -1.47 16 8 S -0.08 -2.47 21.06 -56.49 -1.19 -3.66 16 9 C -0.13 -3.38 4.82 71.24 0.34 -3.04 16 10 C 0.51 19.91 7.81 87.66 0.68 20.59 16 11 O -0.58 -28.78 15.53 -3.04 -0.05 -28.83 16 12 N -0.70 -27.52 5.07 -446.09 -2.26 -29.78 16 13 C 0.27 13.83 2.56 44.24 0.11 13.94 16 14 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 15 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 16 C -0.55 -28.20 8.73 25.60 0.22 -27.98 16 17 H 0.08 3.66 7.74 -2.91 -0.02 3.63 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -52.43 11.32 21.45 0.24 -52.19 16 20 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 23 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 24 C -0.16 -4.04 9.73 22.50 0.22 -3.82 16 25 H 0.07 0.46 7.66 -2.39 -0.02 0.45 16 26 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 28 H 0.16 1.45 6.29 -2.91 -0.02 1.43 16 29 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 30 H 0.14 2.17 5.87 -2.91 -0.02 2.15 16 31 H 0.15 2.87 7.73 -2.39 -0.02 2.85 16 32 H 0.14 2.91 7.76 -2.39 -0.02 2.89 16 33 H 0.41 12.91 8.54 -92.71 -0.79 12.11 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 37 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.05 335.33 2.83 -69.22 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.29 Total: 18.97 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 4.74 Total: -9.53 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.02 Total: -81.97 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.02 Total: -36.39 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -1.19 Total: -3.66 kcal Total: -72.05 2.83 -69.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.971 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds