Wall clock time and date at job start Tue Mar 31 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 O 1.42901 * 109.47005 * 240.00108 * 2 1 3 5 5 C 1.52998 * 109.47100 * 119.99998 * 2 1 3 6 6 N 1.46505 * 109.46872 * 184.99995 * 5 2 1 7 7 C 1.34779 * 119.99784 * 179.97438 * 6 5 2 8 8 O 1.21547 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.47864 * 119.99963 * 179.97438 * 7 6 5 10 10 C 1.39678 * 120.09838 * 359.73045 * 9 7 6 11 11 C 1.38040 * 120.03358 * 179.74800 * 10 9 7 12 12 C 1.38173 * 120.24739 * 0.54454 * 11 10 9 13 13 C 1.39184 * 120.19976 * 359.70398 * 12 11 10 14 14 S 1.76207 * 120.02166 * 179.97438 * 13 12 11 15 15 C 1.76203 * 100.00104 * 265.53072 * 14 13 12 16 16 H 1.08002 * 119.99556 * 5.12213 * 15 14 13 17 17 C 1.38718 * 119.99689 * 185.11777 * 15 14 13 18 18 N 1.31621 * 120.00364 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99767 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47126 * 90.00352 * 19 17 15 21 21 H 1.48501 * 109.47284 * 209.99934 * 19 17 15 22 22 H 1.48498 * 109.47221 * 329.99977 * 19 17 15 23 23 C 1.38878 * 119.95971 * 0.02562 * 13 12 11 24 24 H 1.08999 * 109.47345 * 299.99789 * 1 2 3 25 25 H 1.09003 * 109.47284 * 60.00081 * 1 2 3 26 26 H 1.09005 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46943 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46938 * 300.00131 * 3 2 1 29 29 H 1.08999 * 109.46802 * 59.99878 * 3 2 1 30 30 H 0.96694 * 114.00457 * 299.99826 * 4 2 1 31 31 H 1.08991 * 109.46954 * 304.99944 * 5 2 1 32 32 H 1.08999 * 109.46843 * 65.00289 * 5 2 1 33 33 H 0.97007 * 120.00272 * 359.97438 * 6 5 2 34 34 H 1.07997 * 119.98134 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.87774 * 180.25181 * 11 10 9 36 36 H 1.08001 * 119.90239 * 179.72664 * 12 11 10 37 37 H 0.97001 * 120.00426 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.12078 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7212 1.2492 6 7 3.5000 -0.6178 1.3109 7 6 4.1730 -1.1826 2.3330 8 8 3.5686 -1.7780 3.2033 9 6 5.6467 -1.0787 2.3950 10 6 6.3439 -0.4007 1.3924 11 6 7.7192 -0.3000 1.4543 12 6 8.4130 -0.8779 2.5002 13 6 7.7289 -1.5604 3.5019 14 16 8.6184 -2.2961 4.8332 15 6 8.7963 -3.9358 4.2131 16 1 8.4620 -4.1746 3.2143 17 6 9.3660 -4.9198 5.0078 18 7 9.7730 -4.6288 6.2252 19 14 9.5540 -6.6583 4.3507 20 1 10.8692 -6.7922 3.6742 21 1 9.4756 -7.6240 5.4760 22 1 8.4667 -6.9407 3.3794 23 6 6.3447 -1.6620 3.4510 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.7210 -1.5952 -1.2330 31 1 1.6053 -0.2617 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9825 -0.1429 0.6161 34 1 5.8063 0.0482 0.5703 35 1 8.2554 0.2283 0.6799 36 1 9.4894 -0.7996 2.5408 37 1 10.1717 -5.3168 6.7807 38 1 5.8112 -2.1905 4.2271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177351294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:51 Heat of formation + Delta-G solvation = -74.177912 kcal Electronic energy + Delta-G solvation = -20652.043292 eV Core-core repulsion = 17392.134461 eV Total energy + Delta-G solvation = -3259.908831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15918 -38.72362 -37.61292 -34.51940 -32.52631 -32.49879 -30.83676 -30.48900 -27.85947 -26.69528 -25.56267 -23.31488 -22.18440 -20.86638 -20.34781 -18.48481 -17.56755 -16.93009 -16.07207 -15.89126 -15.47457 -15.11043 -14.84315 -14.70729 -14.55632 -14.20674 -13.64397 -13.37146 -13.14445 -13.00810 -12.89197 -12.58723 -12.42960 -12.16907 -12.08676 -11.64527 -11.15604 -11.14647 -11.11952 -11.07368 -10.70147 -10.49654 -9.97087 -9.76788 -9.18917 -9.15629 -8.99636 -8.57379 -8.02133 -6.70546 -6.27883 -4.01842 1.17506 1.67850 3.04664 3.06312 3.20928 3.23985 3.29003 3.48016 3.82102 4.09929 4.24366 4.27166 4.43481 4.50735 4.85642 5.08243 5.10138 5.12209 5.18861 5.25631 5.31087 5.39742 5.48318 5.49011 5.53005 5.66768 5.74989 5.80471 5.88547 6.00163 6.26464 6.33216 6.59833 6.65070 6.94160 7.20174 7.23276 7.49828 7.58297 8.29040 8.33495 9.17964 10.78887 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.003286 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.466467 B = 8519.132564 C = 8977.984796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 C -0.141 4.141 4 O -0.558 6.558 5 C 0.095 3.905 6 N -0.726 5.726 7 C 0.562 3.438 8 O -0.537 6.537 9 C -0.155 4.155 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.055 4.055 13 C -0.107 4.107 14 S -0.035 6.035 15 C -0.519 4.519 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.019 4.019 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.379 0.621 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.402 0.598 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.270 0.730 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.398 11.261 -14.035 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.074 3.926 3 C -0.198 4.198 4 O -0.364 6.364 5 C -0.029 4.029 6 N -0.381 5.381 7 C 0.351 3.649 8 O -0.414 6.414 9 C -0.160 4.160 10 C -0.108 4.108 11 C -0.161 4.161 12 C -0.076 4.076 13 C -0.218 4.218 14 S 0.199 5.801 15 C -0.667 4.667 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.040 4.040 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.227 0.773 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.099 11.766 -12.297 22.101 hybrid contribution -0.424 -1.931 -1.780 2.660 sum -14.523 9.835 -14.077 22.490 Atomic orbital electron populations 1.22422 0.94593 1.03026 1.03349 1.21478 0.93409 0.93384 0.84322 1.21772 1.02022 0.93115 1.02928 1.86554 1.77278 1.29245 1.43364 1.22029 0.81166 1.01196 0.98532 1.45843 1.07024 1.58003 1.27187 1.18440 0.87456 0.77977 0.81031 1.90769 1.69919 1.42068 1.38653 1.19849 0.91965 1.05304 0.98833 1.21144 0.94722 0.97944 0.97021 1.21059 0.93870 1.01867 0.99271 1.21963 1.00361 0.93565 0.91723 1.22851 0.96026 1.01020 1.01858 1.83601 1.67767 1.09385 1.19323 1.22838 1.47013 0.93687 1.03136 0.90623 1.24998 0.94718 0.99315 0.94546 1.69985 1.38393 1.34444 1.07763 0.86119 0.78769 0.81859 0.78570 1.20157 1.20648 1.19563 1.21946 0.93421 0.93175 0.95499 0.91102 0.91196 0.91878 0.91796 0.91426 0.90696 0.77263 0.90530 0.91190 0.76057 0.86558 0.85832 0.85053 0.92056 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.99 8.81 37.16 0.33 -0.67 16 2 C 0.11 0.84 1.07 -90.62 -0.10 0.75 16 3 C -0.14 -0.98 8.62 37.16 0.32 -0.66 16 4 O -0.56 -4.49 12.92 -35.23 -0.46 -4.95 16 5 C 0.10 0.93 4.82 -4.04 -0.02 0.91 16 6 N -0.73 -8.61 5.14 -61.25 -0.31 -8.92 16 7 C 0.56 9.25 7.77 -12.32 -0.10 9.15 16 8 O -0.54 -10.76 16.34 5.32 0.09 -10.67 16 9 C -0.15 -2.66 5.87 -105.00 -0.62 -3.28 16 10 C -0.09 -1.26 9.54 -39.12 -0.37 -1.63 16 11 C -0.14 -2.06 10.02 -39.68 -0.40 -2.45 16 12 C -0.05 -1.00 9.79 -39.25 -0.38 -1.38 16 13 C -0.11 -2.31 5.45 -38.99 -0.21 -2.52 16 14 S -0.04 -0.92 21.41 -107.50 -2.30 -3.22 16 15 C -0.52 -14.77 9.46 30.91 0.29 -14.48 16 16 H 0.08 2.14 7.79 -52.49 -0.41 1.73 16 17 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 18 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 19 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.02 -0.39 9.34 -38.92 -0.36 -0.75 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.46 6.58 -51.93 -0.34 0.12 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 2.02 9.05 45.56 0.41 2.43 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 4.03 5.02 -40.82 -0.20 3.83 16 34 H 0.12 1.21 6.40 -52.49 -0.34 0.87 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -33.73 339.86 -8.09 -41.82 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.22 Total: 4.16 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.72 Total: -15.04 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.42 Total: -33.79 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.37 Total: -15.62 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.30 Total: -3.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.73 -8.09 -41.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177351294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.361 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds