Wall clock time and date at job start Tue Mar 31 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 O 1.42901 * 109.47005 * 240.00108 * 2 1 3 5 5 C 1.52998 * 109.47100 * 119.99998 * 2 1 3 6 6 N 1.46505 * 109.46872 * 184.99995 * 5 2 1 7 7 C 1.34779 * 119.99784 * 179.97438 * 6 5 2 8 8 O 1.21547 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.47864 * 119.99963 * 179.97438 * 7 6 5 10 10 C 1.39678 * 120.09838 * 359.73045 * 9 7 6 11 11 C 1.38040 * 120.03358 * 179.74800 * 10 9 7 12 12 C 1.38173 * 120.24739 * 0.54454 * 11 10 9 13 13 C 1.39184 * 120.19976 * 359.70398 * 12 11 10 14 14 S 1.76207 * 120.02166 * 179.97438 * 13 12 11 15 15 C 1.76203 * 100.00104 * 265.53072 * 14 13 12 16 16 H 1.08002 * 119.99556 * 5.12213 * 15 14 13 17 17 C 1.38718 * 119.99689 * 185.11777 * 15 14 13 18 18 N 1.31621 * 120.00364 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99767 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47126 * 90.00352 * 19 17 15 21 21 H 1.48501 * 109.47284 * 209.99934 * 19 17 15 22 22 H 1.48498 * 109.47221 * 329.99977 * 19 17 15 23 23 C 1.38878 * 119.95971 * 0.02562 * 13 12 11 24 24 H 1.08999 * 109.47345 * 299.99789 * 1 2 3 25 25 H 1.09003 * 109.47284 * 60.00081 * 1 2 3 26 26 H 1.09005 * 109.47207 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46943 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46938 * 300.00131 * 3 2 1 29 29 H 1.08999 * 109.46802 * 59.99878 * 3 2 1 30 30 H 0.96694 * 114.00457 * 299.99826 * 4 2 1 31 31 H 1.08991 * 109.46954 * 304.99944 * 5 2 1 32 32 H 1.08999 * 109.46843 * 65.00289 * 5 2 1 33 33 H 0.97007 * 120.00272 * 359.97438 * 6 5 2 34 34 H 1.07997 * 119.98134 * 359.97438 * 10 9 7 35 35 H 1.08000 * 119.87774 * 180.25181 * 11 10 9 36 36 H 1.08001 * 119.90239 * 179.72664 * 12 11 10 37 37 H 0.97001 * 120.00426 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.12078 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0399 -0.7212 1.2492 6 7 3.5000 -0.6178 1.3109 7 6 4.1730 -1.1826 2.3330 8 8 3.5686 -1.7780 3.2033 9 6 5.6467 -1.0787 2.3950 10 6 6.3439 -0.4007 1.3924 11 6 7.7192 -0.3000 1.4543 12 6 8.4130 -0.8779 2.5002 13 6 7.7289 -1.5604 3.5019 14 16 8.6184 -2.2961 4.8332 15 6 8.7963 -3.9358 4.2131 16 1 8.4620 -4.1746 3.2143 17 6 9.3660 -4.9198 5.0078 18 7 9.7730 -4.6288 6.2252 19 14 9.5540 -6.6583 4.3507 20 1 10.8692 -6.7922 3.6742 21 1 9.4756 -7.6240 5.4760 22 1 8.4667 -6.9407 3.3794 23 6 6.3447 -1.6620 3.4510 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.7210 -1.5952 -1.2330 31 1 1.6053 -0.2617 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9825 -0.1429 0.6161 34 1 5.8063 0.0482 0.5703 35 1 8.2554 0.2283 0.6799 36 1 9.4894 -0.7996 2.5408 37 1 10.1717 -5.3168 6.7807 38 1 5.8112 -2.1905 4.2271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177351294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:50 Heat of formation + Delta-G solvation = -98.921901 kcal Electronic energy + Delta-G solvation = -20653.116272 eV Core-core repulsion = 17392.134461 eV Total energy + Delta-G solvation = -3260.981811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35285 -39.64223 -38.82428 -35.53993 -34.66391 -33.28681 -32.11349 -31.86003 -28.35098 -27.77049 -27.58694 -24.58877 -23.57025 -21.69168 -21.43850 -20.03726 -19.17716 -17.86812 -17.33885 -16.94311 -16.75043 -16.70761 -16.34437 -15.72150 -15.68732 -15.33061 -15.05102 -14.65928 -14.56800 -14.06071 -13.69591 -13.48644 -13.26624 -13.10030 -13.06104 -12.97069 -12.91621 -12.67957 -12.60755 -12.40672 -11.76717 -11.70251 -11.33444 -11.22494 -10.98518 -10.74692 -10.31422 -9.91502 -9.71371 -8.81596 -8.40138 -6.20385 -0.20190 0.23935 1.28804 1.36906 1.45384 1.63606 1.77062 2.03765 2.23769 2.78579 2.92887 3.28601 3.40697 3.56279 3.67486 3.85536 3.92787 3.96733 4.04387 4.34382 4.46217 4.48970 4.58777 4.69247 4.75814 4.86689 4.91102 4.91921 5.01886 5.20120 5.20466 5.30188 5.30768 5.34409 5.37459 5.49135 5.84611 6.14854 6.40963 6.77589 7.00177 7.09474 8.67062 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.023241 B = 0.003286 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.466467 B = 8519.132564 C = 8977.984796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 C -0.146 4.146 4 O -0.569 6.569 5 C 0.090 3.910 6 N -0.701 5.701 7 C 0.560 3.440 8 O -0.583 6.583 9 C -0.158 4.158 10 C -0.064 4.064 11 C -0.120 4.120 12 C -0.062 4.062 13 C -0.128 4.128 14 S -0.095 6.095 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.993 3.007 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.045 4.045 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.415 0.585 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.136 0.864 37 H 0.274 0.726 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 12.414 -17.700 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.083 3.917 3 C -0.203 4.203 4 O -0.377 6.377 5 C -0.034 4.034 6 N -0.355 5.355 7 C 0.348 3.652 8 O -0.464 6.464 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.139 4.139 12 C -0.083 4.083 13 C -0.240 4.240 14 S 0.140 5.860 15 C -0.684 4.684 16 H 0.085 0.915 17 C -0.186 4.186 18 N -0.543 5.543 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.067 4.067 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.186 0.814 35 H 0.193 0.807 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.900 12.953 -16.006 25.416 hybrid contribution -0.283 -2.144 -0.761 2.293 sum -15.183 10.809 -16.767 25.070 Atomic orbital electron populations 1.22402 0.93196 1.03606 1.03929 1.21432 0.94330 0.93184 0.82738 1.21842 1.01971 0.92765 1.03695 1.86529 1.77607 1.30296 1.43304 1.22258 0.79584 1.01457 1.00059 1.45681 1.07994 1.56124 1.25698 1.18408 0.87227 0.78008 0.81516 1.90752 1.70595 1.44403 1.40684 1.19962 0.92670 1.05142 0.98492 1.21678 0.94820 0.95206 0.96524 1.21550 0.94044 0.99901 0.98433 1.22085 1.00904 0.93426 0.91876 1.22506 0.95995 1.03445 1.02015 1.83479 1.69290 1.09583 1.23640 1.23061 1.47276 0.95030 1.03001 0.91503 1.26009 0.94053 1.03776 0.94726 1.70106 1.39134 1.35985 1.09038 0.85040 0.79173 0.76228 0.78132 1.18600 1.19673 1.19367 1.21627 0.93259 0.95143 0.96653 0.90598 0.90521 0.91397 0.91915 0.90682 0.90045 0.75996 0.90817 0.91682 0.74574 0.81412 0.80663 0.84572 0.91663 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.81 71.98 0.63 -0.87 16 2 C 0.12 1.47 1.07 -10.79 -0.01 1.46 16 3 C -0.15 -1.53 8.62 71.98 0.62 -0.91 16 4 O -0.57 -7.36 12.92 -148.98 -1.93 -9.28 16 5 C 0.09 1.60 4.82 86.38 0.42 2.02 16 6 N -0.70 -14.93 5.14 -465.96 -2.40 -17.32 16 7 C 0.56 18.04 7.77 86.79 0.67 18.71 16 8 O -0.58 -24.10 16.34 -3.86 -0.06 -24.16 16 9 C -0.16 -5.28 5.87 -20.11 -0.12 -5.39 16 10 C -0.06 -1.53 9.54 22.57 0.22 -1.31 16 11 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 12 C -0.06 -2.18 9.79 22.48 0.22 -1.96 16 13 C -0.13 -5.75 5.45 22.65 0.12 -5.63 16 14 S -0.09 -5.23 21.41 -56.49 -1.21 -6.44 16 15 C -0.54 -31.86 9.46 67.93 0.64 -31.21 16 16 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 17 C 0.02 1.13 5.49 84.84 0.47 1.60 16 18 N -0.91 -55.12 13.22 21.63 0.29 -54.83 16 19 Si 0.99 45.01 29.55 68.60 2.03 47.04 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 C -0.04 -1.95 9.34 22.70 0.21 -1.73 16 24 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.06 0.66 6.58 -2.39 -0.02 0.65 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.39 3.08 9.05 -74.06 -0.67 2.41 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.41 6.60 5.02 -92.70 -0.47 6.13 16 34 H 0.17 2.34 6.40 -2.91 -0.02 2.32 16 35 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.10 5.07 7.65 -2.91 -0.02 5.04 16 Total: -1.00 -78.81 339.86 0.99 -77.82 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.05 Total: 15.18 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.32 Total: -27.99 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.11 Total: -72.16 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.99 Total: -33.44 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.21 Total: -6.44 kcal Total: -78.81 0.99 -77.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177351294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.101 kcal (2) G-P(sol) polarization free energy of solvation -78.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds