Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 H 1.09007 * 109.47272 * 55.00229 * 3 2 1 5 5 C 1.50704 * 109.47229 * 174.99978 * 3 2 1 6 6 H 1.08001 * 119.99567 * 120.00036 * 5 3 2 7 7 C 1.37873 * 120.00118 * 300.00464 * 5 3 2 8 8 N 1.31510 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47238 * 119.99746 * 9 7 5 12 12 H 1.48503 * 109.47125 * 239.99889 * 9 7 5 13 13 N 1.46498 * 109.47106 * 295.00387 * 3 2 1 14 14 C 1.34772 * 120.00478 * 84.99856 * 13 3 2 15 15 O 1.21810 * 119.99728 * 0.02562 * 14 13 3 16 16 C 1.41277 * 120.00371 * 179.97438 * 14 13 3 17 17 C 1.35111 * 119.99799 * 179.97438 * 16 14 13 18 18 S 1.76202 * 119.99695 * 180.02562 * 17 16 14 19 19 C 1.81002 * 100.00060 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47435 * 180.02562 * 19 18 17 21 21 C 1.34512 * 125.79090 * 90.02163 * 20 19 18 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 19 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 270.02759 * 20 19 18 25 25 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46851 * 299.99796 * 1 2 3 27 27 H 1.08996 * 109.47185 * 59.99685 * 1 2 3 28 28 H 1.09005 * 109.47167 * 240.00277 * 2 1 3 29 29 H 1.08996 * 109.47185 * 120.00315 * 2 1 3 30 30 H 0.97008 * 119.99808 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99557 * 264.99444 * 13 3 2 32 32 H 1.07994 * 119.99821 * 0.02562 * 16 14 13 33 33 H 1.07994 * 120.00379 * 0.02562 * 17 16 14 34 34 H 1.09003 * 109.46937 * 59.99944 * 19 18 17 35 35 H 1.09005 * 109.46793 * 300.00498 * 19 18 17 36 36 H 1.08007 * 126.58064 * 359.97438 * 21 20 19 37 37 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 38 38 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5989 1.5443 0.1929 11 1 6.4001 1.6156 2.6090 12 1 6.4963 -0.5191 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3426 2.6326 -0.4300 16 6 0.0615 3.2965 -2.5739 17 6 -1.1590 3.8644 -2.6894 18 16 -1.6252 4.6521 -4.1950 19 6 -3.2951 5.1983 -3.7600 20 6 -3.9094 5.9188 -4.9324 21 6 -4.6351 5.3509 -5.9123 22 6 -5.0093 6.3873 -6.7981 23 6 -4.4894 7.5265 -6.3069 24 8 -3.8251 7.2368 -5.1762 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8294 -0.0612 2.9498 31 1 2.2719 2.1232 -1.9977 32 1 0.7512 3.3251 -3.4044 33 1 -1.8489 3.8354 -1.8590 34 1 -3.2457 5.8719 -2.9044 35 1 -3.9060 4.3321 -3.5056 36 1 -4.8835 4.3039 -6.0051 37 1 -5.5993 6.2841 -7.6968 38 1 -4.5897 8.5077 -6.7467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183793807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = -8.036841 kcal Electronic energy + Delta-G solvation = -20063.471407 eV Core-core repulsion = 16806.430667 eV Total energy + Delta-G solvation = -3257.040739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.92315 -39.17827 -35.19220 -33.58325 -32.71311 -32.37554 -32.26358 -30.75662 -27.30140 -26.99294 -24.02888 -22.59210 -22.13223 -21.00014 -19.78518 -19.26706 -17.80705 -17.44008 -16.86458 -16.39368 -15.58545 -15.31367 -15.06915 -14.55299 -14.42955 -14.28780 -13.69133 -13.30874 -13.18962 -13.00752 -12.66387 -12.43863 -12.35802 -12.09243 -11.52552 -11.24284 -10.94565 -10.84633 -10.61234 -10.49098 -10.29508 -10.27220 -10.14767 -9.60932 -9.11677 -9.00889 -8.81143 -8.48605 -7.88877 -7.58059 -6.11017 -4.20097 0.79097 1.31279 1.72831 2.06179 2.37372 2.58064 3.24653 3.32632 3.35462 4.02155 4.13416 4.27438 4.49807 4.55015 4.64963 4.80781 4.97315 5.10275 5.20578 5.42100 5.53695 5.67714 5.74649 6.02526 6.09561 6.21417 6.41467 6.48663 6.68670 6.73092 7.07098 7.22651 7.39356 7.48062 7.64590 7.76420 7.92688 8.20015 8.69535 8.79748 9.15904 9.47324 10.94396 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.002410 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.717292 B =11617.833679 C =12020.057494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.537 3.463 15 O -0.557 6.557 16 C -0.172 4.172 17 C -0.102 4.102 18 S -0.094 6.094 19 C -0.036 4.036 20 C -0.006 4.006 21 C -0.183 4.183 22 C -0.216 4.216 23 C -0.030 4.030 24 O -0.170 6.170 25 H 0.022 0.978 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.263 0.737 31 H 0.389 0.611 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.467 10.287 -16.454 24.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.347 5.347 14 C 0.323 3.677 15 O -0.440 6.440 16 C -0.205 4.205 17 C -0.236 4.236 18 S 0.150 5.850 19 C -0.183 4.183 20 C -0.058 4.058 21 C -0.205 4.205 22 C -0.235 4.235 23 C -0.099 4.099 24 O -0.066 6.066 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.277 10.538 -16.429 24.183 hybrid contribution 0.549 -0.317 0.702 0.945 sum -13.728 10.221 -15.727 23.244 Atomic orbital electron populations 1.21835 0.98367 0.97958 1.01242 1.21928 0.92624 0.99764 1.02269 1.18803 0.94218 0.89228 0.81098 0.93225 1.21282 0.90749 1.38843 1.06266 0.92021 1.24890 0.98608 0.94846 0.95405 1.69908 1.35004 1.37723 1.09347 0.86405 0.84906 0.77749 0.78107 1.19742 1.20903 1.20893 1.46460 1.14485 1.55223 1.18526 1.16748 0.83225 0.80084 0.87683 1.90801 1.51473 1.60835 1.40870 1.21774 0.96941 1.02307 0.99501 1.25622 1.00392 0.98473 0.99104 1.86098 1.14421 1.67408 1.17070 1.21956 0.96994 1.02624 0.96759 1.21323 1.03652 0.81533 0.99253 1.21670 1.02524 1.01033 0.95314 1.21870 1.06280 0.92444 1.02895 1.24132 0.98053 1.00774 0.86971 1.84034 1.59464 1.24979 1.38141 0.95918 0.93181 0.94250 0.95037 0.88297 0.92646 0.77819 0.85721 0.83504 0.87252 0.86149 0.82958 0.83122 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.08 -0.15 6.63 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -14.66 5.01 -57.92 -0.29 -14.95 16 14 C 0.54 10.72 6.11 -15.11 -0.09 10.62 16 15 O -0.56 -12.90 13.23 5.09 0.07 -12.83 16 16 C -0.17 -2.67 9.50 -39.54 -0.38 -3.05 16 17 C -0.10 -1.39 9.52 29.62 0.28 -1.11 16 18 S -0.09 -1.06 22.02 -107.50 -2.37 -3.43 16 19 C -0.04 -0.32 6.20 36.00 0.22 -0.10 16 20 C -0.01 -0.06 6.58 -35.63 -0.23 -0.30 16 21 C -0.18 -1.59 10.81 -39.70 -0.43 -2.02 16 22 C -0.22 -1.62 10.91 -39.70 -0.43 -2.06 16 23 C -0.03 -0.22 12.09 29.42 0.36 0.13 16 24 O -0.17 -1.71 10.65 5.71 0.06 -1.65 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 7.10 8.50 -40.82 -0.35 6.76 16 32 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.15 2.05 7.41 -52.49 -0.39 1.66 16 34 H 0.11 0.91 8.14 -51.91 -0.42 0.49 16 35 H 0.12 0.88 8.14 -51.91 -0.42 0.46 16 36 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -31.36 338.78 -7.96 -39.32 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.06 Total: 6.93 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.08 Total: -10.00 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.34 Total: -39.10 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.13 Total: -14.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.37 Total: -3.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.36 -7.96 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.282 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds