Wall clock time and date at job start Tue Mar 31 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47151 * 2 1 4 4 H 1.09007 * 109.47272 * 55.00229 * 3 2 1 5 5 C 1.50704 * 109.47229 * 174.99978 * 3 2 1 6 6 H 1.08001 * 119.99567 * 120.00036 * 5 3 2 7 7 C 1.37873 * 120.00118 * 300.00464 * 5 3 2 8 8 N 1.31510 * 119.99905 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47238 * 119.99746 * 9 7 5 12 12 H 1.48503 * 109.47125 * 239.99889 * 9 7 5 13 13 N 1.46498 * 109.47106 * 295.00387 * 3 2 1 14 14 C 1.34772 * 120.00478 * 84.99856 * 13 3 2 15 15 O 1.21810 * 119.99728 * 0.02562 * 14 13 3 16 16 C 1.41277 * 120.00371 * 179.97438 * 14 13 3 17 17 C 1.35111 * 119.99799 * 179.97438 * 16 14 13 18 18 S 1.76202 * 119.99695 * 180.02562 * 17 16 14 19 19 C 1.81002 * 100.00060 * 180.02562 * 18 17 16 20 20 C 1.50696 * 109.47435 * 180.02562 * 19 18 17 21 21 C 1.34512 * 125.79090 * 90.02163 * 20 19 18 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 19 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 270.02759 * 20 19 18 25 25 H 1.08999 * 109.46934 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46851 * 299.99796 * 1 2 3 27 27 H 1.08996 * 109.47185 * 59.99685 * 1 2 3 28 28 H 1.09005 * 109.47167 * 240.00277 * 2 1 3 29 29 H 1.08996 * 109.47185 * 120.00315 * 2 1 3 30 30 H 0.97008 * 119.99808 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99557 * 264.99444 * 13 3 2 32 32 H 1.07994 * 119.99821 * 0.02562 * 16 14 13 33 33 H 1.07994 * 120.00379 * 0.02562 * 17 16 14 34 34 H 1.09003 * 109.46937 * 59.99944 * 19 18 17 35 35 H 1.09005 * 109.46793 * 300.00498 * 19 18 17 36 36 H 1.08007 * 126.58064 * 359.97438 * 21 20 19 37 37 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 38 38 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5989 1.5443 0.1929 11 1 6.4001 1.6156 2.6090 12 1 6.4963 -0.5191 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3426 2.6326 -0.4300 16 6 0.0615 3.2965 -2.5739 17 6 -1.1590 3.8644 -2.6894 18 16 -1.6252 4.6521 -4.1950 19 6 -3.2951 5.1983 -3.7600 20 6 -3.9094 5.9188 -4.9324 21 6 -4.6351 5.3509 -5.9123 22 6 -5.0093 6.3873 -6.7981 23 6 -4.4894 7.5265 -6.3069 24 8 -3.8251 7.2368 -5.1762 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8294 -0.0612 2.9498 31 1 2.2719 2.1232 -1.9977 32 1 0.7512 3.3251 -3.4044 33 1 -1.8489 3.8354 -1.8590 34 1 -3.2457 5.8719 -2.9044 35 1 -3.9060 4.3321 -3.5056 36 1 -4.8835 4.3039 -6.0051 37 1 -5.5993 6.2841 -7.6968 38 1 -4.5897 8.5077 -6.7467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183793807.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:43 Heat of formation + Delta-G solvation = -27.112834 kcal Electronic energy + Delta-G solvation = -20064.298604 eV Core-core repulsion = 16806.430667 eV Total energy + Delta-G solvation = -3257.867936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.54219 -40.81161 -37.04517 -34.31201 -34.22561 -33.97182 -32.99497 -32.55192 -29.06927 -27.82300 -25.66741 -24.31648 -22.73866 -21.86787 -21.41300 -20.85047 -19.02808 -18.47696 -17.99171 -17.49964 -17.18324 -16.67424 -16.24430 -16.15602 -15.70053 -15.18590 -15.03574 -14.65238 -14.38858 -13.84866 -13.77999 -13.59722 -13.56988 -13.45964 -13.17350 -13.10695 -12.85068 -12.69967 -12.14322 -12.04605 -11.68940 -11.55386 -11.52946 -11.02868 -10.89010 -10.76246 -10.51904 -9.62692 -9.44823 -8.63732 -8.15365 -6.32384 -0.01357 0.07266 0.92399 1.22875 1.44286 1.45491 1.57362 1.75393 1.99573 2.38790 2.51826 2.91186 3.14336 3.52154 3.89603 3.98717 4.09078 4.26951 4.33658 4.38053 4.51038 4.59262 4.77668 4.84716 4.87495 4.97843 5.00275 5.11113 5.12364 5.29672 5.46023 5.54829 5.57920 5.64751 5.81910 5.96278 6.12446 6.18563 6.76021 7.02382 7.34680 7.60696 8.90241 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.039723 B = 0.002410 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.717292 B =11617.833679 C =12020.057494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.701 5.701 14 C 0.538 3.462 15 O -0.598 6.598 16 C -0.200 4.200 17 C -0.076 4.076 18 S -0.078 6.078 19 C -0.034 4.034 20 C -0.033 4.033 21 C -0.186 4.186 22 C -0.228 4.228 23 C -0.028 4.028 24 O -0.191 6.191 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.809 11.140 -18.917 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.349 5.349 14 C 0.327 3.673 15 O -0.483 6.483 16 C -0.233 4.233 17 C -0.211 4.211 18 S 0.168 5.832 19 C -0.181 4.181 20 C -0.084 4.084 21 C -0.208 4.208 22 C -0.247 4.247 23 C -0.096 4.096 24 O -0.088 6.088 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.238 0.762 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.133 0.867 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.190 0.810 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.619 11.405 -18.945 26.508 hybrid contribution 0.443 -0.444 1.356 1.494 sum -14.176 10.961 -17.589 25.109 Atomic orbital electron populations 1.21666 0.96920 0.99086 1.00285 1.21780 0.93846 0.99094 1.01260 1.18381 0.93637 0.89249 0.81436 0.98337 1.21619 0.91482 1.38783 1.06666 0.91134 1.25775 1.03332 0.94427 0.95044 1.70057 1.36955 1.38434 1.09876 0.85321 0.79146 0.77829 0.78169 1.18537 1.21005 1.20401 1.46216 1.15495 1.55600 1.17585 1.17325 0.82187 0.79203 0.88632 1.90777 1.52444 1.62397 1.42704 1.21503 0.98595 1.04752 0.98468 1.25789 0.99306 0.95894 1.00063 1.86117 1.16300 1.65992 1.14799 1.22071 0.95540 1.03498 0.97005 1.21417 1.05122 0.81763 1.00076 1.22007 1.01722 1.01983 0.95074 1.22229 1.06703 0.92166 1.03616 1.24922 0.96569 1.02338 0.85804 1.84023 1.60242 1.25234 1.39315 0.93593 0.95532 0.93745 0.94106 0.90989 0.92613 0.76154 0.83316 0.84070 0.86701 0.84404 0.81805 0.80984 0.74436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.51 71.98 0.61 -4.98 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.89 16 3 C 0.28 14.44 2.24 44.25 0.10 14.54 16 4 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 5 C -0.55 -29.36 8.73 25.60 0.22 -29.13 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.91 -52.76 11.29 21.44 0.24 -52.52 16 9 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 10 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 13 N -0.70 -29.75 5.01 -455.35 -2.28 -32.03 16 14 C 0.54 21.76 6.11 84.99 0.52 22.28 16 15 O -0.60 -28.59 13.23 -4.70 -0.06 -28.65 16 16 C -0.20 -6.03 9.50 22.30 0.21 -5.82 16 17 C -0.08 -1.98 9.52 67.10 0.64 -1.34 16 18 S -0.08 -1.62 22.02 -56.49 -1.24 -2.86 16 19 C -0.03 -0.55 6.20 71.23 0.44 -0.11 16 20 C -0.03 -0.58 6.58 24.83 0.16 -0.42 16 21 C -0.19 -2.84 10.81 22.19 0.24 -2.60 16 22 C -0.23 -2.86 10.91 22.19 0.24 -2.62 16 23 C -0.03 -0.34 12.09 66.97 0.81 0.47 16 24 O -0.19 -3.51 10.65 -2.47 -0.03 -3.53 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 27 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 28 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 30 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 31 H 0.40 14.60 8.50 -92.70 -0.79 13.81 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.14 3.85 7.41 -2.91 -0.02 3.83 16 34 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.24 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -69.49 338.78 3.75 -65.73 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.28 Total: 23.73 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.82 Total: -14.40 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.04 Total: -84.55 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.09 Total: -32.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -1.24 Total: -2.86 kcal Total: -69.49 3.75 -65.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183793807.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.619 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds