Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76202 * 103.00074 * 180.02562 * 17 16 14 19 19 C 1.38915 * 120.02259 * 359.72715 * 18 17 16 20 20 C 1.38096 * 119.97195 * 179.76796 * 19 18 17 21 21 C 1.38712 * 120.02525 * 0.48149 * 20 19 18 22 22 O 1.36004 * 119.97293 * 179.74566 * 21 20 19 23 23 C 1.38708 * 120.04797 * 359.77166 * 21 20 19 24 24 C 1.38093 * 120.02610 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 27 27 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08001 * 120.01641 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.98417 * 180.21054 * 20 19 18 36 36 H 0.96702 * 114.00162 * 270.01939 * 22 21 20 37 37 H 1.08001 * 119.98552 * 179.97438 * 23 21 20 38 38 H 1.08001 * 120.01063 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.8954 4.7210 4.1179 19 6 -0.9016 4.6717 5.0873 20 6 -1.1141 5.2504 6.3231 21 6 -2.3229 5.8720 6.5999 22 8 -2.5328 6.4370 7.8190 23 6 -3.3177 5.9172 5.6344 24 6 -3.1055 5.3438 4.3962 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 0.0379 4.1840 4.8736 35 1 -0.3404 5.2152 7.0757 36 1 -2.9184 5.8351 8.4704 37 1 -4.2586 6.4010 5.8511 38 1 -3.8805 5.3787 3.6447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183813830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -59.387606 kcal Electronic energy + Delta-G solvation = -20583.729365 eV Core-core repulsion = 17324.461889 eV Total energy + Delta-G solvation = -3259.267476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.84277 -39.30644 -36.92487 -35.38942 -32.61297 -31.89858 -31.39183 -30.22496 -29.39605 -27.01688 -23.16464 -22.92218 -22.40049 -20.91033 -19.67397 -18.76860 -18.19721 -17.54277 -16.48400 -16.07733 -15.76770 -15.64529 -15.33992 -14.73134 -14.21242 -14.02337 -13.71956 -13.41832 -13.22434 -12.91351 -12.64664 -12.55678 -12.46888 -12.19447 -11.92492 -11.67444 -10.95458 -10.82407 -10.75398 -10.48778 -10.27053 -9.94813 -9.72839 -9.67422 -9.40095 -9.35394 -9.10851 -8.40292 -8.23008 -7.42932 -6.63962 -4.28721 0.80695 1.01259 1.25679 2.28953 3.00030 3.23528 3.34994 3.41705 3.55499 3.77859 3.91782 4.37097 4.52735 4.61063 4.91471 4.96071 5.01350 5.11026 5.15563 5.27086 5.35237 5.64484 5.80327 5.97488 6.01814 6.04828 6.09816 6.21644 6.38946 6.61823 6.74136 6.87053 6.97579 7.25045 7.30672 7.31831 7.54941 8.16179 8.30171 8.59545 8.81324 9.40661 10.76918 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003023 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.746065 B = 9260.805961 C = 9685.970095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.043 0.957 5 C -0.619 4.619 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.897 5.897 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.694 5.694 14 C 0.519 3.481 15 O -0.531 6.531 16 C -0.153 4.153 17 S -0.025 6.025 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.123 4.123 21 C 0.090 3.910 22 O -0.500 6.500 23 C -0.125 4.125 24 C -0.086 4.086 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.394 0.606 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.388 0.612 37 H 0.132 0.868 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 6.738 15.715 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.061 0.939 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.342 5.342 14 C 0.301 3.699 15 O -0.409 6.409 16 C -0.304 4.304 17 S 0.220 5.780 18 C -0.219 4.219 19 C -0.147 4.147 20 C -0.143 4.143 21 C 0.043 3.957 22 O -0.310 6.310 23 C -0.145 4.145 24 C -0.110 4.110 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.150 0.850 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.681 6.535 12.105 20.860 hybrid contribution 1.117 0.272 3.595 3.774 sum -14.564 6.807 15.700 22.471 Atomic orbital electron populations 1.21889 0.97272 0.99023 1.01967 1.22373 0.93863 0.99649 1.01978 1.19112 0.95916 0.88601 0.81863 0.93882 1.22075 0.89564 1.49793 1.04227 0.92041 1.25687 0.97529 0.92279 1.01198 1.70877 1.07061 1.40708 1.34309 0.84120 0.75506 0.77798 0.75858 1.20868 1.19441 1.20531 1.46180 1.13958 1.55652 1.18414 1.19395 0.83340 0.79604 0.87518 1.90722 1.50468 1.59338 1.40365 1.23945 0.99304 1.04675 1.02508 1.86258 1.15337 1.66496 1.09898 1.22245 0.97625 1.02706 0.99302 1.21123 0.98777 1.01503 0.93250 1.21327 0.97582 0.97768 0.97615 1.18428 0.93538 0.97156 0.86596 1.84866 1.85279 1.40522 1.20289 1.21340 0.99262 1.00267 0.93616 1.20628 0.95828 0.97742 0.96816 0.94958 0.93366 0.92926 0.91139 0.93044 0.92078 0.77290 0.87005 0.86890 0.85385 0.85166 0.75636 0.84981 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.53 37.15 0.32 -2.53 16 2 C -0.14 -3.03 5.28 -26.73 -0.14 -3.17 16 3 C 0.25 5.71 1.82 -69.08 -0.13 5.58 16 4 H 0.04 1.09 6.26 -51.93 -0.32 0.76 16 5 C -0.62 -16.23 9.01 -34.44 -0.31 -16.54 16 6 H 0.06 1.68 7.96 -52.48 -0.42 1.26 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.26 13.69 55.43 0.76 -25.51 16 9 Si 1.04 24.65 26.27 -169.99 -4.47 20.18 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -5.93 5.67 56.52 0.32 -5.61 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.69 -13.11 5.03 -54.93 -0.28 -13.39 16 14 C 0.52 9.21 6.44 -10.99 -0.07 9.13 16 15 O -0.53 -11.17 13.00 5.55 0.07 -11.10 16 16 C -0.15 -1.98 4.81 36.01 0.17 -1.80 16 17 S -0.02 -0.34 21.06 -107.50 -2.26 -2.60 16 18 C -0.11 -1.22 6.11 -39.08 -0.24 -1.46 16 19 C -0.12 -1.27 9.36 -39.38 -0.37 -1.63 16 20 C -0.12 -1.17 9.98 -39.46 -0.39 -1.56 16 21 C 0.09 0.85 6.70 -39.23 -0.26 0.59 16 22 O -0.50 -4.08 13.51 -19.75 -0.27 -4.34 16 23 C -0.12 -1.15 9.98 -39.46 -0.39 -1.54 16 24 C -0.09 -0.89 9.79 -39.38 -0.39 -1.27 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.93 5.63 -51.92 -0.29 0.64 16 27 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 28 H 0.07 1.60 4.74 -51.92 -0.25 1.36 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 31 H 0.39 6.50 8.53 -40.82 -0.35 6.15 16 32 H 0.11 1.18 7.73 -51.92 -0.40 0.78 16 33 H 0.11 1.26 7.76 -51.92 -0.40 0.85 16 34 H 0.13 1.15 5.87 -52.49 -0.31 0.84 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.39 1.26 9.06 45.56 0.41 1.67 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -32.03 326.16 -7.91 -39.93 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.08 Total: 7.10 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.30 Total: -15.20 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.48 Total: -38.89 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.19 Total: -15.44 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.47 Total: 20.18 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.26 Total: -2.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.03 -7.91 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.455 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds