Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48495 * 109.46979 * 60.00269 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21286 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 S 1.81398 * 109.47297 * 180.02562 * 16 14 13 18 18 C 1.76202 * 103.00074 * 180.02562 * 17 16 14 19 19 C 1.38915 * 120.02259 * 359.72715 * 18 17 16 20 20 C 1.38096 * 119.97195 * 179.76796 * 19 18 17 21 21 C 1.38712 * 120.02525 * 0.48149 * 20 19 18 22 22 O 1.36004 * 119.97293 * 179.74566 * 21 20 19 23 23 C 1.38708 * 120.04797 * 359.77166 * 21 20 19 24 24 C 1.38093 * 120.02610 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 27 27 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08001 * 120.01641 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.98417 * 180.21054 * 20 19 18 36 36 H 0.96702 * 114.00162 * 270.01939 * 22 21 20 37 37 H 1.08001 * 119.98552 * 179.97438 * 23 21 20 38 38 H 1.08001 * 120.01063 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5326 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6304 0.4600 16 6 0.0606 3.3290 2.6792 17 16 -1.6234 3.9885 2.5386 18 6 -1.8954 4.7210 4.1179 19 6 -0.9016 4.6717 5.0873 20 6 -1.1141 5.2504 6.3231 21 6 -2.3229 5.8720 6.5999 22 8 -2.5328 6.4370 7.8190 23 6 -3.3177 5.9172 5.6344 24 6 -3.1055 5.3438 4.3962 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 0.0379 4.1840 4.8736 35 1 -0.3404 5.2152 7.0757 36 1 -2.9184 5.8351 8.4704 37 1 -4.2586 6.4010 5.8511 38 1 -3.8805 5.3787 3.6447 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183813830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -82.183769 kcal Electronic energy + Delta-G solvation = -20584.717880 eV Core-core repulsion = 17324.461889 eV Total energy + Delta-G solvation = -3260.255991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.82008 -40.53688 -37.59178 -37.12242 -34.51044 -33.48556 -32.24936 -31.10718 -30.49177 -28.80550 -24.35855 -23.86828 -23.64849 -22.46074 -21.30388 -19.94473 -19.39302 -18.73655 -17.88237 -17.26957 -16.87494 -16.58073 -16.46225 -15.81450 -15.51503 -15.08301 -14.96241 -14.78685 -14.46772 -14.41739 -14.24655 -13.93152 -13.62816 -13.27907 -13.20667 -12.83447 -12.67693 -12.48805 -12.29517 -11.79931 -11.49520 -11.40743 -11.19810 -11.13551 -10.88054 -10.51800 -10.49202 -10.07484 -9.86843 -8.80495 -8.37403 -6.45602 0.07007 0.26993 0.28998 1.35467 1.45177 1.50164 1.62079 1.68777 2.38499 2.41710 2.53189 3.00462 3.29645 3.74344 3.83294 3.92610 3.94799 4.15497 4.30417 4.31816 4.40358 4.47590 4.54748 4.66927 4.84617 4.95932 5.10671 5.10996 5.20288 5.23824 5.28770 5.38878 5.53957 5.60006 5.66437 5.72554 6.00045 6.51510 6.73586 6.85641 7.25339 7.35575 8.59484 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003023 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.746065 B = 9260.805961 C = 9685.970095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 C 0.253 3.747 4 H 0.023 0.977 5 C -0.612 4.612 6 H 0.042 0.958 7 C -0.004 4.004 8 N -0.929 5.929 9 Si 1.069 2.931 10 H -0.284 1.284 11 H -0.243 1.243 12 H -0.275 1.275 13 N -0.695 5.695 14 C 0.518 3.482 15 O -0.564 6.564 16 C -0.136 4.136 17 S -0.072 6.072 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.130 4.130 21 C 0.093 3.907 22 O -0.508 6.508 23 C -0.128 4.128 24 C -0.093 4.093 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.406 0.594 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.411 0.589 37 H 0.152 0.848 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 7.048 17.534 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.041 0.959 5 C -0.650 4.650 6 H 0.060 0.940 7 C -0.205 4.205 8 N -0.564 5.564 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.168 1.168 12 H -0.200 1.200 13 N -0.345 5.345 14 C 0.303 3.697 15 O -0.444 6.444 16 C -0.287 4.287 17 S 0.172 5.828 18 C -0.229 4.229 19 C -0.150 4.150 20 C -0.150 4.150 21 C 0.046 3.954 22 O -0.322 6.322 23 C -0.148 4.148 24 C -0.117 4.117 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.241 0.759 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.270 0.730 37 H 0.169 0.831 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.294 6.851 13.995 23.279 hybrid contribution 1.567 0.286 3.212 3.585 sum -15.727 7.137 17.207 24.380 Atomic orbital electron populations 1.21768 0.95505 1.00402 1.01432 1.22259 0.95325 0.98264 1.01669 1.18776 0.93465 0.89734 0.83227 0.95915 1.22279 0.91456 1.48073 1.03220 0.93982 1.26765 0.97680 0.92149 1.03936 1.70976 1.08075 1.43290 1.34066 0.83743 0.75210 0.78640 0.73218 1.20992 1.16761 1.20050 1.45972 1.15056 1.55977 1.17483 1.20025 0.82185 0.78699 0.88783 1.90710 1.51271 1.60306 1.42085 1.23779 0.99182 1.05597 1.00148 1.86393 1.16097 1.67746 1.12556 1.22141 0.98664 1.03921 0.98160 1.21316 0.98957 1.01457 0.93238 1.21552 0.98163 0.97580 0.97698 1.18576 0.93483 0.96159 0.87151 1.84808 1.85557 1.41499 1.20299 1.21552 1.00166 1.00052 0.93041 1.20811 0.95726 0.97626 0.97498 0.92554 0.93185 0.94203 0.92321 0.92488 0.93216 0.75895 0.84135 0.84746 0.84170 0.83466 0.73008 0.83068 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.41 16 2 C -0.14 -5.72 5.28 30.59 0.16 -5.56 16 3 C 0.25 11.47 1.82 44.24 0.08 11.56 16 4 H 0.02 1.15 6.26 -2.39 -0.01 1.13 16 5 C -0.61 -32.32 9.01 25.60 0.23 -32.09 16 6 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 7 C 0.00 -0.25 5.32 84.66 0.45 0.20 16 8 N -0.93 -55.41 13.69 21.45 0.29 -55.12 16 9 Si 1.07 49.63 26.27 68.60 1.80 51.43 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.24 -10.23 5.67 99.48 0.56 -9.67 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.70 -25.49 5.03 -446.10 -2.24 -27.73 16 14 C 0.52 17.68 6.44 87.66 0.56 18.24 16 15 O -0.56 -23.33 13.00 -3.05 -0.04 -23.37 16 16 C -0.14 -3.23 4.81 71.24 0.34 -2.89 16 17 S -0.07 -1.87 21.06 -56.49 -1.19 -3.06 16 18 C -0.12 -2.48 6.11 22.59 0.14 -2.34 16 19 C -0.13 -2.30 9.36 22.40 0.21 -2.09 16 20 C -0.13 -2.12 9.98 22.35 0.22 -1.90 16 21 C 0.09 1.52 6.70 22.50 0.15 1.67 16 22 O -0.51 -6.79 13.51 -93.60 -1.26 -8.05 16 23 C -0.13 -2.07 9.98 22.35 0.22 -1.84 16 24 C -0.09 -1.77 9.79 22.40 0.22 -1.55 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.84 5.63 -2.38 -0.01 1.83 16 27 H 0.04 1.58 7.88 -2.39 -0.02 1.56 16 28 H 0.06 2.59 4.74 -2.38 -0.01 2.58 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.26 15.40 8.73 -92.71 -0.81 14.59 16 31 H 0.41 12.83 8.53 -92.71 -0.79 12.04 16 32 H 0.14 2.53 7.73 -2.39 -0.02 2.51 16 33 H 0.13 2.63 7.76 -2.39 -0.02 2.61 16 34 H 0.14 2.10 5.87 -2.91 -0.02 2.09 16 35 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.41 1.37 9.06 -74.06 -0.67 0.70 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -69.24 326.16 0.43 -68.81 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.54 Total: 20.08 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 3.61 Total: -23.00 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.95 Total: -82.85 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.30 Total: -31.42 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.80 Total: 51.43 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -1.19 Total: -3.06 kcal Total: -69.24 0.43 -68.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183813830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.372 kcal (2) G-P(sol) polarization free energy of solvation -69.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds