Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21553 * 120.00069 * 0.02562 * 14 13 3 16 16 C 1.47847 * 119.99835 * 179.97438 * 14 13 3 17 17 C 1.39570 * 120.14350 * 359.73033 * 16 14 13 18 18 C 1.37964 * 119.85060 * 179.74267 * 17 16 14 19 19 C 1.38360 * 120.14386 * 0.53063 * 18 17 16 20 20 S 1.76202 * 119.85241 * 179.76529 * 19 18 17 21 21 C 1.81406 * 102.99664 * 269.97629 * 20 19 18 22 22 O 1.42102 * 103.00054 * 156.12640 * 20 19 18 23 23 C 1.38359 * 120.29521 * 359.74216 * 19 18 17 24 24 C 1.37962 * 120.14030 * 359.97438 * 23 19 18 25 25 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 27 27 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 28 28 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 29 29 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 32 32 H 1.07999 * 120.07466 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.92546 * 180.26996 * 18 17 16 34 34 H 1.08995 * 109.47100 * 60.00311 * 21 20 19 35 35 H 1.09000 * 109.46548 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.47365 * 299.99578 * 21 20 19 37 37 H 1.07990 * 119.93082 * 180.02562 * 23 19 18 38 38 H 1.08005 * 120.07144 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5981 1.5579 -0.2004 11 1 6.5015 -0.5094 -1.4646 12 1 6.3939 1.6222 -2.6156 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6319 0.4324 16 6 0.0437 3.3247 2.6306 17 6 0.9304 3.3579 3.7080 18 6 0.5610 3.9804 4.8825 19 6 -0.6895 4.5614 4.9974 20 16 -1.1556 5.3490 6.5031 21 6 -1.9198 4.0024 7.4483 22 8 -2.1595 6.2648 6.0873 23 6 -1.5753 4.5271 3.9351 24 6 -1.2161 3.9128 2.7531 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8296 -0.0660 -2.9471 31 1 2.2719 2.1230 1.9979 32 1 1.9049 2.9006 3.6212 33 1 1.2478 4.0106 5.7154 34 1 -1.1912 3.2061 7.6002 35 1 -2.2516 4.3802 8.4154 36 1 -2.7755 3.6118 6.8975 37 1 -2.5496 4.9827 4.0311 38 1 -1.9083 3.8871 1.9245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183845209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = -53.084097 kcal Electronic energy + Delta-G solvation = -21064.700275 eV Core-core repulsion = 17805.706140 eV Total energy + Delta-G solvation = -3258.994135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.86058 -38.08701 -35.96296 -35.13667 -32.67598 -31.63209 -31.05663 -30.39817 -29.06767 -27.05844 -24.16970 -23.01296 -22.56500 -20.48948 -19.45962 -18.43671 -17.78891 -16.58186 -15.97775 -15.66920 -15.09786 -15.01029 -14.78549 -14.58572 -14.24038 -13.90660 -13.62111 -13.47150 -13.05694 -12.84465 -12.74264 -12.43712 -12.02766 -11.97206 -11.56627 -11.30113 -11.22651 -11.00588 -10.89064 -10.51475 -10.35123 -10.24005 -9.69232 -9.27407 -9.19420 -9.09275 -9.07819 -8.62952 -8.55614 -7.91122 -6.17066 -4.27019 0.51536 1.28806 1.60294 2.40408 3.13544 3.20665 3.28696 3.30912 3.64048 3.93419 4.05464 4.32441 4.69738 4.82242 4.87810 4.96629 5.14306 5.19913 5.28322 5.44331 5.62018 5.66660 5.87259 6.09043 6.13729 6.34578 6.36119 6.41203 6.61237 6.76357 6.99169 7.14731 7.29544 7.35907 7.56429 7.66943 7.84056 8.12335 8.55732 8.70919 9.00736 9.40305 10.88266 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003283 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.900862 B = 8527.870714 C = 9067.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.697 5.697 14 C 0.535 3.465 15 O -0.540 6.540 16 C -0.082 4.082 17 C -0.108 4.108 18 C -0.052 4.052 19 C -0.452 4.452 20 S 1.333 4.667 21 C -0.498 4.498 22 O -0.858 6.858 23 C -0.063 4.063 24 C -0.082 4.082 25 H 0.023 0.977 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 5.822 19.777 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.345 5.345 14 C 0.320 3.680 15 O -0.419 6.419 16 C -0.085 4.085 17 C -0.128 4.128 18 C -0.072 4.072 19 C -0.549 4.549 20 S 1.530 4.470 21 C -0.655 4.655 22 O -0.854 6.854 23 C -0.082 4.082 24 C -0.102 4.102 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.903 6.619 19.148 20.632 hybrid contribution -0.441 -1.159 -1.027 1.610 sum -4.344 5.460 18.121 19.418 Atomic orbital electron populations 1.21848 0.98383 0.98136 1.01208 1.21943 0.92581 0.99665 1.02427 1.18863 0.94403 0.89244 0.80727 0.93146 1.21245 0.90548 1.39062 1.06531 0.91962 1.24896 0.98720 0.94736 0.95329 1.69902 1.35119 1.37381 1.09443 0.86381 0.84694 0.77794 0.78170 1.19694 1.20846 1.20865 1.46488 1.14199 1.55134 1.18701 1.18198 0.83238 0.79687 0.86860 1.90754 1.51485 1.59837 1.39851 1.20618 0.94993 0.98025 0.94902 1.21534 0.99547 0.98841 0.92874 1.20754 0.94244 0.94461 0.97702 1.27724 1.00806 1.11970 1.14396 1.69441 1.06506 0.81718 0.89362 1.27766 1.10522 1.16514 1.10697 1.93109 1.61924 1.50719 1.79653 1.21058 0.99087 0.95529 0.92508 1.21398 0.95698 0.95345 0.97800 0.95745 0.94400 0.93103 0.88104 0.94952 0.92547 0.77808 0.84679 0.84177 0.86966 0.87714 0.89949 0.85305 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.64 2.24 -69.08 -0.16 6.49 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.88 -24.29 11.28 55.43 0.63 -23.67 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.70 -14.16 4.97 -55.87 -0.28 -14.43 16 14 C 0.54 10.74 6.34 -12.33 -0.08 10.67 16 15 O -0.54 -12.70 13.48 5.32 0.07 -12.63 16 16 C -0.08 -1.31 5.87 -104.97 -0.62 -1.93 16 17 C -0.11 -1.32 9.54 -39.19 -0.37 -1.69 16 18 C -0.05 -0.48 9.73 -39.64 -0.39 -0.86 16 19 C -0.45 -4.73 5.62 -39.49 -0.22 -4.95 16 20 S 1.33 9.60 14.18 -107.50 -1.52 8.07 16 21 C -0.50 -3.08 10.70 101.05 1.08 -2.00 16 22 O -0.86 -12.01 16.88 -35.23 -0.59 -12.61 16 23 C -0.06 -0.85 9.43 -39.64 -0.37 -1.22 16 24 C -0.08 -1.27 9.60 -39.18 -0.38 -1.65 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 28 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.68 6.58 -40.82 -0.27 6.41 16 32 H 0.14 1.40 6.41 -52.49 -0.34 1.07 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.13 1.76 7.44 -52.49 -0.39 1.37 16 38 H 0.14 2.18 7.65 -52.48 -0.40 1.78 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -35.72 328.60 -8.37 -44.09 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -4.88 Total: 6.64 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.72 Total: -15.54 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.35 Total: -38.10 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.52 Total: -25.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -1.52 Total: 8.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.72 -8.37 -44.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.995 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds