Wall clock time and date at job start Tue Mar 31 2020 06:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21553 * 120.00069 * 0.02562 * 14 13 3 16 16 C 1.47847 * 119.99835 * 179.97438 * 14 13 3 17 17 C 1.39570 * 120.14350 * 359.73033 * 16 14 13 18 18 C 1.37964 * 119.85060 * 179.74267 * 17 16 14 19 19 C 1.38360 * 120.14386 * 0.53063 * 18 17 16 20 20 S 1.76202 * 119.85241 * 179.76529 * 19 18 17 21 21 C 1.81406 * 102.99664 * 269.97629 * 20 19 18 22 22 O 1.42102 * 103.00054 * 156.12640 * 20 19 18 23 23 C 1.38359 * 120.29521 * 359.74216 * 19 18 17 24 24 C 1.37962 * 120.14030 * 359.97438 * 23 19 18 25 25 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 27 27 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 28 28 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 29 29 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 32 32 H 1.07999 * 120.07466 * 359.97438 * 17 16 14 33 33 H 1.08001 * 119.92546 * 180.26996 * 18 17 16 34 34 H 1.08995 * 109.47100 * 60.00311 * 21 20 19 35 35 H 1.09000 * 109.46548 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.47365 * 299.99578 * 21 20 19 37 37 H 1.07990 * 119.93082 * 180.02562 * 23 19 18 38 38 H 1.08005 * 120.07144 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.5981 1.5579 -0.2004 11 1 6.5015 -0.5094 -1.4646 12 1 6.3939 1.6222 -2.6156 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6319 0.4324 16 6 0.0437 3.3247 2.6306 17 6 0.9304 3.3579 3.7080 18 6 0.5610 3.9804 4.8825 19 6 -0.6895 4.5614 4.9974 20 16 -1.1556 5.3490 6.5031 21 6 -1.9198 4.0024 7.4483 22 8 -2.1595 6.2648 6.0873 23 6 -1.5753 4.5271 3.9351 24 6 -1.2161 3.9128 2.7531 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8296 -0.0660 -2.9471 31 1 2.2719 2.1230 1.9979 32 1 1.9049 2.9006 3.6212 33 1 1.2478 4.0106 5.7154 34 1 -1.1912 3.2061 7.6002 35 1 -2.2516 4.3802 8.4154 36 1 -2.7755 3.6118 6.8975 37 1 -2.5496 4.9827 4.0311 38 1 -1.9083 3.8871 1.9245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183845209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:09 Heat of formation + Delta-G solvation = -79.496558 kcal Electronic energy + Delta-G solvation = -21065.845605 eV Core-core repulsion = 17805.706140 eV Total energy + Delta-G solvation = -3260.139465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24847 -39.38484 -36.98390 -36.88706 -34.46085 -33.26929 -32.08341 -31.80209 -29.59449 -28.95142 -25.63417 -24.62183 -23.66519 -22.08916 -21.23029 -19.59141 -18.95458 -17.89406 -17.45587 -17.11774 -16.48789 -16.34390 -15.90063 -15.74060 -15.70363 -14.99784 -14.69800 -14.57766 -14.39610 -14.12083 -13.93471 -13.60488 -13.45173 -13.28292 -13.18586 -12.88482 -12.76315 -12.70672 -12.20497 -12.16973 -12.07158 -11.63144 -11.41410 -11.06549 -10.84740 -10.55171 -10.33160 -10.05106 -9.70759 -9.36705 -8.16496 -6.34484 -0.50714 0.30949 0.90826 1.45973 1.47305 1.59148 1.65178 1.97275 2.31854 2.54279 2.75096 2.99898 3.13615 3.73848 3.83973 3.95260 4.30772 4.36216 4.41787 4.44356 4.51872 4.58445 4.60651 4.70516 4.94640 5.00573 5.11681 5.14256 5.20023 5.23521 5.31447 5.39120 5.50650 5.58689 5.74805 5.81324 5.90286 6.13769 6.72775 6.88910 7.30795 7.47883 8.89270 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027609 B = 0.003283 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.900862 B = 8527.870714 C = 9067.113400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.287 1.287 13 N -0.691 5.691 14 C 0.533 3.467 15 O -0.587 6.587 16 C -0.110 4.110 17 C -0.103 4.103 18 C -0.029 4.029 19 C -0.449 4.449 20 S 1.414 4.586 21 C -0.498 4.498 22 O -0.926 6.926 23 C -0.081 4.081 24 C -0.102 4.102 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.158 0.842 33 H 0.209 0.791 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 5.846 24.075 24.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.179 1.179 11 H -0.205 1.205 12 H -0.214 1.214 13 N -0.340 5.340 14 C 0.320 3.680 15 O -0.470 6.470 16 C -0.114 4.114 17 C -0.122 4.122 18 C -0.048 4.048 19 C -0.543 4.543 20 S 1.611 4.389 21 C -0.656 4.656 22 O -0.922 6.922 23 C -0.100 4.100 24 C -0.122 4.122 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.176 0.824 33 H 0.226 0.774 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.078 0.922 37 H 0.135 0.865 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.501 6.659 23.466 24.438 hybrid contribution -1.267 -1.137 -2.209 2.789 sum -2.768 5.522 21.256 22.136 Atomic orbital electron populations 1.21690 0.97404 0.99150 0.99984 1.21792 0.93354 0.99101 1.01662 1.18448 0.94050 0.89165 0.80986 0.98624 1.21597 0.91014 1.38867 1.07014 0.90479 1.25816 1.03529 0.94311 0.94958 1.70064 1.37147 1.38249 1.10030 0.85277 0.78827 0.77828 0.78287 1.17924 1.20458 1.21362 1.46174 1.14891 1.55108 1.17867 1.18855 0.82359 0.78818 0.87917 1.90723 1.52729 1.61494 1.42039 1.20283 0.96358 1.00366 0.94344 1.21891 0.99474 0.98428 0.92443 1.21482 0.94095 0.91055 0.98144 1.28340 1.00826 1.10429 1.14744 1.68646 1.04428 0.79848 0.86008 1.27773 1.10515 1.16567 1.10776 1.92990 1.64322 1.54634 1.80249 1.21040 0.99668 0.96254 0.93022 1.21255 0.95693 0.97034 0.98206 0.93408 0.94186 0.95786 0.90744 0.93556 0.92614 0.75722 0.82434 0.77411 0.83692 0.85751 0.92188 0.86453 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.51 71.98 0.61 -5.17 16 2 C -0.12 -5.91 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.12 2.24 44.24 0.10 14.22 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -28.19 8.73 25.60 0.22 -27.97 16 6 H 0.08 3.65 7.74 -2.92 -0.02 3.63 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -52.02 11.28 21.45 0.24 -51.78 16 9 Si 0.97 40.98 29.54 68.60 2.03 43.00 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.69 -28.34 4.97 -448.97 -2.23 -30.58 16 14 C 0.53 22.22 6.34 86.79 0.55 22.77 16 15 O -0.59 -29.72 13.48 -3.88 -0.05 -29.78 16 16 C -0.11 -3.54 5.87 -20.09 -0.12 -3.66 16 17 C -0.10 -2.17 9.54 22.53 0.21 -1.96 16 18 C -0.03 -0.38 9.73 22.23 0.22 -0.17 16 19 C -0.45 -8.02 5.62 22.33 0.13 -7.89 16 20 S 1.41 15.31 14.18 -56.49 -0.80 14.51 16 21 C -0.50 -4.00 10.70 113.37 1.21 -2.78 16 22 O -0.93 -24.65 16.88 -148.98 -2.52 -27.17 16 23 C -0.08 -2.19 9.43 22.23 0.21 -1.98 16 24 C -0.10 -3.30 9.60 22.53 0.22 -3.09 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.80 5.64 -2.39 -0.01 1.79 16 27 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 28 H 0.07 4.09 5.94 -2.39 -0.01 4.08 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.41 13.38 6.58 -92.71 -0.61 12.77 16 32 H 0.16 2.57 6.41 -2.91 -0.02 2.56 16 33 H 0.21 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.12 3.38 7.44 -2.92 -0.02 3.36 16 38 H 0.11 4.03 7.65 -2.91 -0.02 4.01 16 Total: -1.00 -84.81 328.60 1.32 -83.49 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.47 Total: 20.52 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.18 Total: -22.23 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.99 Total: -82.35 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -2.57 Total: -56.94 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 15.31 SS G_CDS: -0.80 Total: 14.51 kcal Total: -84.81 1.32 -83.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.998 kcal (2) G-P(sol) polarization free energy of solvation -84.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds