Wall clock time and date at job start Tue Mar 31 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.14336 * 359.72082 * 16 14 13 18 18 C 1.37957 * 119.84979 * 179.73991 * 17 16 14 19 19 C 1.38358 * 120.14767 * 0.53908 * 18 17 16 20 20 S 1.76199 * 119.85519 * 179.71434 * 19 18 17 21 21 C 1.81396 * 102.99988 * 270.02285 * 20 19 18 22 22 O 1.42099 * 102.99759 * 23.87414 * 20 19 18 23 23 C 1.38362 * 120.28873 * 359.74098 * 19 18 17 24 24 C 1.37959 * 120.14727 * 359.97277 * 23 19 18 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.08002 * 120.07437 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.92452 * 180.27132 * 18 17 16 34 34 H 1.09002 * 109.47571 * 60.00015 * 21 20 19 35 35 H 1.09005 * 109.46940 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47183 * 299.99896 * 21 20 19 37 37 H 1.08008 * 119.92355 * 180.02562 * 23 19 18 38 38 H 1.07995 * 120.07105 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9793 3.3545 -3.7240 18 6 0.6202 3.9637 -4.9086 19 6 -0.6288 4.5441 -5.0407 20 16 -1.0767 5.3266 -6.5546 21 6 -0.5317 7.0388 -6.3057 22 8 -0.2302 4.6935 -7.5042 23 6 -1.5275 4.5132 -3.9891 24 6 -1.1831 3.9021 -2.8012 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9561 2.9054 -3.6208 33 1 1.3171 3.9913 -5.7331 34 1 0.5436 7.0557 -6.1275 35 1 -0.7623 7.6263 -7.1944 36 1 -1.0492 7.4634 -5.4455 37 1 -2.5010 4.9678 -4.0989 38 1 -1.8853 3.8791 -1.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183845229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:11 Heat of formation + Delta-G solvation = -53.492573 kcal Electronic energy + Delta-G solvation = -21136.875270 eV Core-core repulsion = 17877.863423 eV Total energy + Delta-G solvation = -3259.011848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.98776 -38.22616 -36.00329 -35.31542 -32.73828 -31.98297 -31.10667 -30.65790 -29.10061 -27.27951 -24.14839 -22.84758 -22.32680 -20.70107 -19.64463 -18.50713 -18.10950 -17.09582 -16.31992 -15.84952 -15.14273 -15.12526 -14.79248 -14.70629 -14.10332 -13.81622 -13.60249 -13.46594 -13.21100 -12.90954 -12.69692 -12.50057 -12.45910 -12.21568 -12.05295 -11.72823 -11.28306 -10.85570 -10.74791 -10.55437 -10.46847 -9.90248 -9.84804 -9.40833 -9.33226 -9.22552 -9.14524 -8.67526 -8.29961 -8.17483 -6.66092 -4.25321 0.43849 1.22281 1.55515 2.35663 3.03298 3.37881 3.42855 3.58225 3.59148 3.81428 3.93539 4.40522 4.63134 4.78377 4.85247 4.93006 5.03329 5.07180 5.18722 5.36131 5.53999 5.64193 5.81968 6.01929 6.04051 6.05964 6.06962 6.22941 6.27218 6.64600 6.69919 6.76196 6.90125 7.00232 7.30752 7.33421 7.60755 8.19706 8.36972 8.62797 8.85543 9.39657 10.71989 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.003404 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.842987 B = 8224.338984 C = 8594.865467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.043 0.957 5 C -0.632 4.632 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.884 5.884 9 Si 1.030 2.970 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.537 3.463 15 O -0.542 6.542 16 C -0.085 4.085 17 C -0.104 4.104 18 C -0.061 4.061 19 C -0.450 4.450 20 S 1.333 4.667 21 C -0.498 4.498 22 O -0.857 6.857 23 C -0.054 4.054 24 C -0.084 4.084 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.511 10.525 -13.670 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.060 0.940 5 C -0.669 4.669 6 H 0.080 0.920 7 C -0.159 4.159 8 N -0.515 5.515 9 Si 0.856 3.144 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.339 5.339 14 C 0.322 3.678 15 O -0.422 6.422 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.080 4.080 19 C -0.547 4.547 20 S 1.530 4.470 21 C -0.655 4.655 22 O -0.853 6.853 23 C -0.073 4.073 24 C -0.103 4.103 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.280 9.787 -12.156 23.284 hybrid contribution 2.659 0.413 -1.452 3.058 sum -14.620 10.200 -13.608 22.427 Atomic orbital electron populations 1.21900 0.97362 0.98981 1.01943 1.22235 0.93743 0.99568 1.01510 1.19073 0.95914 0.88568 0.81731 0.93976 1.21966 0.89613 1.50352 1.04979 0.91980 1.25617 0.96600 0.91576 1.02095 1.70874 1.13861 1.36211 1.30594 0.84223 0.76075 0.77667 0.76398 1.20768 1.20639 1.19849 1.46283 1.14176 1.55147 1.18327 1.18247 0.83075 0.79523 0.86922 1.90736 1.50726 1.60045 1.40666 1.20549 0.95261 0.98389 0.94585 1.21505 0.99481 0.98631 0.92819 1.21027 0.95343 0.94625 0.96989 1.27767 1.00334 1.11484 1.15137 1.69449 1.14978 0.83910 0.78689 1.27765 1.08964 1.20329 1.08445 1.93114 1.69751 1.69586 1.52842 1.20803 0.98429 0.96766 0.91332 1.21419 0.95558 0.95400 0.97967 0.94980 0.92930 0.93341 0.93134 0.91696 0.91834 0.77345 0.85158 0.85220 0.89894 0.87661 0.86964 0.84109 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.53 37.16 0.32 -2.62 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.10 16 3 C 0.25 5.98 1.84 -69.08 -0.13 5.85 16 4 H 0.04 1.09 6.12 -51.93 -0.32 0.77 16 5 C -0.63 -17.02 8.92 -34.44 -0.31 -17.32 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 7 C 0.05 1.39 5.15 -17.82 -0.09 1.29 16 8 N -0.88 -26.01 13.70 55.43 0.76 -25.26 16 9 Si 1.03 24.84 26.56 -169.99 -4.51 20.33 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.23 6.34 56.52 0.36 -5.87 16 13 N -0.69 -14.15 4.98 -55.88 -0.28 -14.43 16 14 C 0.54 10.36 6.38 -12.33 -0.08 10.28 16 15 O -0.54 -11.74 13.48 5.32 0.07 -11.67 16 16 C -0.08 -1.31 5.87 -104.97 -0.62 -1.93 16 17 C -0.10 -1.48 9.54 -39.19 -0.37 -1.85 16 18 C -0.06 -0.79 9.43 -39.64 -0.37 -1.16 16 19 C -0.45 -4.57 5.62 -39.49 -0.22 -4.80 16 20 S 1.33 9.27 14.18 -107.50 -1.52 7.75 16 21 C -0.50 -3.03 10.70 101.05 1.08 -1.94 16 22 O -0.86 -11.79 16.88 -35.23 -0.59 -12.38 16 23 C -0.05 -0.49 9.73 -39.64 -0.39 -0.87 16 24 C -0.08 -1.05 9.60 -39.19 -0.38 -1.43 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 27 H 0.05 0.98 5.63 -51.93 -0.29 0.68 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.52 5.77 -51.93 -0.30 1.22 16 30 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 31 H 0.39 7.27 6.56 -40.82 -0.27 7.01 16 32 H 0.13 1.74 6.41 -52.49 -0.34 1.41 16 33 H 0.13 1.71 7.44 -52.49 -0.39 1.32 16 34 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -36.40 325.92 -7.73 -44.14 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.86 Total: 6.22 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -1.70 Total: -19.60 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.48 Total: -39.69 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.52 Total: -24.05 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.51 Total: 20.33 kcal Atomic # 16 Polarization: 9.27 SS G_CDS: -1.52 Total: 7.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.40 -7.73 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.357 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds