Wall clock time and date at job start Tue Mar 31 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39576 * 120.14336 * 359.72082 * 16 14 13 18 18 C 1.37957 * 119.84979 * 179.73991 * 17 16 14 19 19 C 1.38358 * 120.14767 * 0.53908 * 18 17 16 20 20 S 1.76199 * 119.85519 * 179.71434 * 19 18 17 21 21 C 1.81396 * 102.99988 * 270.02285 * 20 19 18 22 22 O 1.42099 * 102.99759 * 23.87414 * 20 19 18 23 23 C 1.38362 * 120.28873 * 359.74098 * 19 18 17 24 24 C 1.37959 * 120.14727 * 359.97277 * 23 19 18 25 25 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.08002 * 120.07437 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.92452 * 180.27132 * 18 17 16 34 34 H 1.09002 * 109.47571 * 60.00015 * 21 20 19 35 35 H 1.09005 * 109.46940 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47183 * 299.99896 * 21 20 19 37 37 H 1.08008 * 119.92355 * 180.02562 * 23 19 18 38 38 H 1.07995 * 120.07105 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9793 3.3545 -3.7240 18 6 0.6202 3.9637 -4.9086 19 6 -0.6288 4.5441 -5.0407 20 16 -1.0767 5.3266 -6.5546 21 6 -0.5317 7.0388 -6.3057 22 8 -0.2302 4.6935 -7.5042 23 6 -1.5275 4.5132 -3.9891 24 6 -1.1831 3.9021 -2.8012 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9561 2.9054 -3.6208 33 1 1.3171 3.9913 -5.7331 34 1 0.5436 7.0557 -6.1275 35 1 -0.7623 7.6263 -7.1944 36 1 -1.0492 7.4634 -5.4455 37 1 -2.5010 4.9678 -4.0989 38 1 -1.8853 3.8791 -1.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183845229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:11 Heat of formation + Delta-G solvation = -80.870656 kcal Electronic energy + Delta-G solvation = -21138.062473 eV Core-core repulsion = 17877.863423 eV Total energy + Delta-G solvation = -3260.199050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33143 -39.45681 -37.11133 -36.89959 -34.62103 -33.62086 -32.10783 -31.90254 -29.62533 -29.14385 -25.42702 -24.29900 -23.70450 -22.22572 -21.32576 -20.06959 -19.21503 -18.48408 -17.49607 -17.16470 -16.57426 -16.13622 -15.87983 -15.77356 -15.54984 -15.12255 -14.63480 -14.58587 -14.49550 -14.44408 -14.28202 -13.83466 -13.72392 -13.49813 -13.31161 -12.79816 -12.68084 -12.55212 -12.33681 -12.22185 -11.80459 -11.64722 -11.43194 -11.28662 -10.92908 -10.46845 -10.36738 -10.08433 -9.89666 -9.39460 -8.88248 -6.47496 -0.54934 0.27364 0.87964 1.43947 1.46429 1.60678 1.68034 1.91992 2.32362 2.39379 2.70338 2.87701 2.97298 3.64688 3.73995 3.88251 4.25328 4.29300 4.32034 4.34895 4.39913 4.49080 4.56138 4.58557 4.78412 4.90144 5.03518 5.04657 5.11876 5.14747 5.20911 5.22513 5.29447 5.48508 5.56197 5.64094 5.78521 5.95698 6.46254 6.70559 7.17964 7.29381 8.48713 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.003404 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.842987 B = 8224.338984 C = 8594.865467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.255 3.745 4 H 0.027 0.973 5 C -0.633 4.633 6 H 0.037 0.963 7 C 0.007 3.993 8 N -0.913 5.913 9 Si 1.065 2.935 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.252 1.252 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.568 6.568 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.081 4.081 19 C -0.448 4.448 20 S 1.414 4.586 21 C -0.499 4.499 22 O -0.924 6.924 23 C -0.031 4.031 24 C -0.087 4.087 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.261 0.739 31 H 0.398 0.602 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.143 0.857 37 H 0.206 0.794 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 12.193 -14.482 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.168 4.168 3 C 0.151 3.849 4 H 0.044 0.956 5 C -0.670 4.670 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.546 5.546 9 Si 0.886 3.114 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.176 1.176 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.450 6.450 16 C -0.116 4.116 17 C -0.134 4.134 18 C -0.100 4.100 19 C -0.543 4.543 20 S 1.610 4.390 21 C -0.657 4.657 22 O -0.920 6.920 23 C -0.049 4.049 24 C -0.107 4.107 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.234 0.766 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.223 0.777 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.772 11.440 -12.989 27.038 hybrid contribution 3.709 0.068 -1.369 3.954 sum -17.063 11.508 -14.358 25.094 Atomic orbital electron populations 1.21770 0.95296 1.00520 1.01459 1.22130 0.95515 0.98177 1.00969 1.18780 0.93594 0.89657 0.82888 0.95567 1.22137 0.91409 1.49319 1.04129 0.94474 1.26765 0.96705 0.90977 1.05111 1.70970 1.15008 1.38603 1.29983 0.83762 0.75906 0.78461 0.73258 1.20400 1.19786 1.17645 1.46149 1.15315 1.55813 1.17456 1.18772 0.81945 0.78588 0.88059 1.90701 1.51224 1.61040 1.42009 1.20301 0.97299 1.00996 0.93019 1.21447 0.99293 0.99412 0.93295 1.21076 0.96866 0.95874 0.96212 1.28349 0.99054 1.10070 1.16803 1.68681 1.12358 0.82842 0.75069 1.27781 1.07789 1.19231 1.10895 1.92993 1.71432 1.72043 1.55523 1.21449 1.00318 0.94339 0.88830 1.21700 0.94246 0.95020 0.99692 0.92364 0.93712 0.93490 0.93192 0.92714 0.93000 0.76640 0.85913 0.86269 0.92183 0.85734 0.83828 0.77735 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 8.53 71.98 0.61 -4.64 16 2 C -0.13 -5.79 5.37 30.60 0.16 -5.63 16 3 C 0.26 12.39 1.84 44.25 0.08 12.47 16 4 H 0.03 1.38 6.12 -2.39 -0.01 1.36 16 5 C -0.63 -35.16 8.92 25.60 0.23 -34.94 16 6 H 0.04 2.20 7.96 -2.91 -0.02 2.17 16 7 C 0.01 0.43 5.15 84.66 0.44 0.86 16 8 N -0.91 -55.22 13.70 21.45 0.29 -54.92 16 9 Si 1.06 50.35 26.56 68.60 1.82 52.17 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.25 -11.01 6.34 99.48 0.63 -10.38 16 13 N -0.70 -29.39 4.98 -448.98 -2.24 -31.63 16 14 C 0.54 20.94 6.38 86.79 0.55 21.49 16 15 O -0.57 -24.51 13.48 -3.89 -0.05 -24.56 16 16 C -0.11 -3.45 5.87 -20.09 -0.12 -3.57 16 17 C -0.11 -3.30 9.54 22.53 0.21 -3.08 16 18 C -0.08 -2.07 9.43 22.23 0.21 -1.86 16 19 C -0.45 -7.79 5.62 22.33 0.13 -7.67 16 20 S 1.41 14.93 14.18 -56.49 -0.80 14.13 16 21 C -0.50 -4.07 10.70 113.37 1.21 -2.86 16 22 O -0.92 -24.11 16.88 -148.98 -2.52 -26.62 16 23 C -0.03 -0.42 9.73 22.23 0.22 -0.20 16 24 C -0.09 -1.97 9.60 22.53 0.22 -1.75 16 25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.04 1.82 7.89 -2.39 -0.02 1.80 16 27 H 0.05 1.85 5.63 -2.39 -0.01 1.84 16 28 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 2.54 5.77 -2.39 -0.01 2.53 16 30 H 0.26 15.83 8.73 -92.70 -0.81 15.02 16 31 H 0.40 15.55 6.56 -92.70 -0.61 14.94 16 32 H 0.12 3.53 6.41 -2.91 -0.02 3.51 16 33 H 0.12 3.24 7.44 -2.91 -0.02 3.22 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.21 0.13 8.06 -2.91 -0.02 0.10 16 38 H 0.15 3.19 7.65 -2.91 -0.02 3.17 16 Total: -1.00 -82.62 325.92 1.03 -81.60 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.36 Total: 21.21 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 4.15 Total: -31.37 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.94 Total: -86.55 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -2.57 Total: -51.19 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 1.82 Total: 52.17 kcal Atomic # 16 Polarization: 14.93 SS G_CDS: -0.80 Total: 14.13 kcal Total: -82.62 1.03 -81.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds