Wall clock time and date at job start Tue Mar 31 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47576 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47576 * 179.97438 * 17 16 14 19 19 O 1.21441 * 119.99972 * 0.02562 * 18 17 16 20 20 C 1.41235 * 119.99937 * 180.02562 * 18 17 16 21 21 C 1.37180 * 125.48041 * 180.02562 * 20 18 17 22 22 C 1.37200 * 113.24716 * 179.97438 * 21 20 18 23 23 C 1.34024 * 115.14524 * 359.97438 * 22 21 20 24 24 S 1.70619 * 110.99798 * 359.72521 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 33 33 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 34 34 H 1.09000 * 109.46863 * 300.00340 * 17 16 14 35 35 H 1.09006 * 109.46691 * 59.99578 * 17 16 14 36 36 H 1.08002 * 123.37639 * 359.97242 * 21 20 18 37 37 H 1.07993 * 122.42833 * 180.02562 * 22 21 20 38 38 H 1.08001 * 124.50111 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 6 -1.3827 3.8944 -2.5211 18 6 -1.7810 4.5692 -3.8083 19 8 -1.0051 4.6021 -4.7419 20 6 -3.0566 5.1634 -3.9288 21 6 -3.5343 5.8042 -5.0437 22 6 -4.8084 6.2883 -4.8859 23 6 -5.3615 6.0557 -3.6874 24 16 -4.2913 5.1925 -2.6772 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.7280 4.1542 -2.8665 33 1 0.0679 2.6147 -3.4685 34 1 -2.0738 3.0786 -2.3091 35 1 -1.4145 4.6183 -1.7067 36 1 -2.9646 5.9165 -5.9543 37 1 -5.3281 6.8175 -5.6707 38 1 -6.3545 6.3692 -3.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183948668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:39 Heat of formation + Delta-G solvation = -55.562630 kcal Electronic energy + Delta-G solvation = -20751.349491 eV Core-core repulsion = 17492.247879 eV Total energy + Delta-G solvation = -3259.101612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01227 -38.88340 -37.57639 -35.12086 -32.77694 -32.30380 -30.96483 -30.32883 -27.31562 -26.22447 -24.31130 -22.88076 -21.12560 -19.93775 -19.47848 -19.23820 -17.93712 -16.84896 -16.15471 -15.91665 -15.76135 -15.22548 -14.62329 -14.58151 -14.29903 -14.08757 -13.41822 -13.11699 -12.94761 -12.74058 -12.65034 -12.40243 -11.90484 -11.78836 -11.48687 -11.23666 -11.14940 -10.98111 -10.93850 -10.81309 -10.30149 -10.17041 -9.92506 -9.60642 -9.18785 -9.03820 -8.93732 -8.90590 -8.47677 -7.78290 -6.10907 -4.19959 0.02675 1.22826 1.62529 1.92903 2.73809 3.25585 3.32361 3.34327 3.45709 3.82847 4.29077 4.50147 4.61898 4.84671 4.99297 5.10514 5.19674 5.21485 5.29207 5.57154 5.66584 5.84743 5.92902 5.97568 5.99325 6.08050 6.40796 6.47399 6.67784 7.06103 7.21337 7.38058 7.39330 7.49527 7.64324 7.76050 7.92716 8.20429 8.71366 8.80056 9.17907 9.47658 10.94442 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033952 B = 0.002866 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.494537 B = 9767.980685 C =10186.194525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.553 6.553 16 C -0.132 4.132 17 C -0.152 4.152 18 C 0.422 3.578 19 O -0.453 6.453 20 C -0.304 4.304 21 C -0.050 4.050 22 C -0.159 4.159 23 C -0.233 4.233 24 S 0.244 5.756 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.630 9.574 -11.968 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.433 6.433 16 C -0.172 4.172 17 C -0.189 4.189 18 C 0.301 3.699 19 O -0.331 6.331 20 C -0.422 4.422 21 C -0.084 4.084 22 C -0.190 4.190 23 C -0.371 4.371 24 S 0.512 5.488 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.170 0.830 37 H 0.161 0.839 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.847 8.893 -10.066 20.774 hybrid contribution 1.145 0.609 -1.719 2.153 sum -14.703 9.502 -11.785 21.103 Atomic orbital electron populations 1.21834 0.98377 0.97961 1.01201 1.21930 0.92614 0.99881 1.02236 1.18773 0.94138 0.89172 0.81139 0.93332 1.21254 0.90822 1.38881 1.06245 0.92106 1.24886 0.98576 0.94825 0.95423 1.69896 1.35099 1.37718 1.09320 0.86464 0.84928 0.77616 0.78188 1.20591 1.21092 1.19855 1.46499 1.14718 1.55856 1.18520 1.20324 0.82820 0.79346 0.88991 1.90655 1.51503 1.60370 1.40798 1.21446 0.96449 1.01773 0.97546 1.21794 0.98484 1.02391 0.96274 1.20245 0.84135 0.76163 0.89349 1.90583 1.51659 1.50379 1.40450 1.24285 1.02688 1.14633 1.00632 1.21032 0.94861 0.94232 0.98238 1.20053 0.95782 1.04934 0.98259 1.25612 1.05882 1.06041 0.99541 1.83411 1.02993 1.48266 1.14129 0.93154 0.95936 0.94285 0.88348 0.95078 0.92602 0.77881 0.88890 0.88984 0.87611 0.87559 0.83025 0.83894 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.58 5.02 -54.93 -0.28 -14.85 16 14 C 0.50 9.57 6.40 -10.99 -0.07 9.50 16 15 O -0.55 -12.20 13.12 5.56 0.07 -12.13 16 16 C -0.13 -1.93 4.99 -27.88 -0.14 -2.07 16 17 C -0.15 -1.98 4.28 -27.88 -0.12 -2.10 16 18 C 0.42 5.37 6.93 -33.17 -0.23 5.14 16 19 O -0.45 -6.80 16.36 5.42 0.09 -6.71 16 20 C -0.30 -3.29 6.23 -38.83 -0.24 -3.54 16 21 C -0.05 -0.48 9.95 -40.34 -0.40 -0.88 16 22 C -0.16 -1.22 10.14 -41.44 -0.42 -1.64 16 23 C -0.23 -1.66 10.93 29.25 0.32 -1.34 16 24 S 0.24 2.09 22.42 -107.50 -2.41 -0.32 16 25 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 7.06 8.54 -40.82 -0.35 6.72 16 32 H 0.09 1.29 8.10 -51.93 -0.42 0.86 16 33 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 36 H 0.15 1.36 8.02 -52.49 -0.42 0.94 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 333.57 15.07 5.03 5.03 Total: -1.00 -30.95 333.57 -8.66 -39.61 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.09 Total: 6.82 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.68 Total: -9.00 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.35 Total: -38.96 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.16 Total: -18.84 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.41 Total: -0.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.95 -8.66 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.948 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds