Wall clock time and date at job start Tue Mar 31 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47576 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47576 * 179.97438 * 17 16 14 19 19 O 1.21441 * 119.99972 * 0.02562 * 18 17 16 20 20 C 1.41235 * 119.99937 * 180.02562 * 18 17 16 21 21 C 1.37180 * 125.48041 * 180.02562 * 20 18 17 22 22 C 1.37200 * 113.24716 * 179.97438 * 21 20 18 23 23 C 1.34024 * 115.14524 * 359.97438 * 22 21 20 24 24 S 1.70619 * 110.99798 * 359.72521 * 23 22 21 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 33 33 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 34 34 H 1.09000 * 109.46863 * 300.00340 * 17 16 14 35 35 H 1.09006 * 109.46691 * 59.99578 * 17 16 14 36 36 H 1.08002 * 123.37639 * 359.97242 * 21 20 18 37 37 H 1.07993 * 122.42833 * 180.02562 * 22 21 20 38 38 H 1.08001 * 124.50111 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 6 -1.3827 3.8944 -2.5211 18 6 -1.7810 4.5692 -3.8083 19 8 -1.0051 4.6021 -4.7419 20 6 -3.0566 5.1634 -3.9288 21 6 -3.5343 5.8042 -5.0437 22 6 -4.8084 6.2883 -4.8859 23 6 -5.3615 6.0557 -3.6874 24 16 -4.2913 5.1925 -2.6772 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 0.7280 4.1542 -2.8665 33 1 0.0679 2.6147 -3.4685 34 1 -2.0738 3.0786 -2.3091 35 1 -1.4145 4.6183 -1.7067 36 1 -2.9646 5.9165 -5.9543 37 1 -5.3281 6.8175 -5.6707 38 1 -6.3545 6.3692 -3.4008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:38 Heat of formation + Delta-G solvation = -74.299011 kcal Electronic energy + Delta-G solvation = -20752.161962 eV Core-core repulsion = 17492.247879 eV Total energy + Delta-G solvation = -3259.914083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11263 -40.35662 -38.31013 -36.96763 -34.28724 -33.97177 -32.66532 -31.24196 -29.08491 -27.36277 -25.42939 -24.61978 -22.31345 -21.45348 -20.95449 -20.17418 -19.10930 -18.40342 -17.35752 -17.13986 -17.03041 -16.81962 -16.08802 -15.92610 -15.64217 -15.05504 -14.71575 -14.58337 -14.35359 -13.76842 -13.69709 -13.54546 -13.28703 -13.16736 -13.12306 -12.98571 -12.79026 -12.68448 -12.19960 -12.13946 -12.00757 -11.81064 -11.55658 -11.04499 -10.93445 -10.63738 -10.47547 -9.88928 -9.58354 -9.55504 -8.15447 -6.32264 -0.71353 0.55137 0.98556 1.19026 1.44700 1.44994 1.55588 1.89732 1.94150 2.35977 2.59960 3.13634 3.24127 3.71720 4.10343 4.10584 4.18651 4.32406 4.41739 4.52182 4.55558 4.60289 4.67176 4.79964 4.84477 4.95793 5.03185 5.09775 5.24660 5.29125 5.36224 5.46711 5.58406 5.65904 5.82451 5.95341 6.19467 6.43157 6.76326 7.03059 7.34958 7.62120 8.89806 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033952 B = 0.002866 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.494537 B = 9767.980685 C =10186.194525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.262 1.262 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.584 6.584 16 C -0.119 4.119 17 C -0.149 4.149 18 C 0.432 3.568 19 O -0.485 6.485 20 C -0.342 4.342 21 C -0.045 4.045 22 C -0.168 4.168 23 C -0.213 4.213 24 S 0.244 5.756 25 H 0.027 0.973 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.447 10.384 -13.521 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.187 1.187 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.465 6.465 16 C -0.159 4.159 17 C -0.187 4.187 18 C 0.313 3.687 19 O -0.366 6.366 20 C -0.459 4.459 21 C -0.080 4.080 22 C -0.198 4.198 23 C -0.352 4.352 24 S 0.512 5.488 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.171 0.829 37 H 0.187 0.813 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.675 9.715 -11.645 22.540 hybrid contribution 1.264 0.419 -1.222 1.807 sum -15.412 10.134 -12.867 22.489 Atomic orbital electron populations 1.21674 0.96753 0.99146 1.00432 1.21783 0.93994 0.99168 1.01141 1.18360 0.93476 0.89228 0.81543 0.98170 1.21603 0.91672 1.38811 1.06617 0.91284 1.25746 1.03185 0.94422 0.95087 1.70044 1.36977 1.38422 1.09824 0.85405 0.79327 0.77444 0.78520 1.20425 1.20900 1.18652 1.46309 1.15784 1.56092 1.17548 1.21056 0.81749 0.78477 0.90103 1.90643 1.52230 1.61274 1.42379 1.21370 0.97612 1.01989 0.94902 1.21770 0.97485 1.02538 0.96884 1.20176 0.84665 0.75464 0.88397 1.90568 1.52743 1.52083 1.41177 1.24166 1.02738 1.16758 1.02277 1.21275 0.95668 0.93228 0.97825 1.20303 0.95094 1.05112 0.99246 1.26029 1.06543 1.03904 0.98677 1.83436 1.02794 1.48633 1.13907 0.95335 0.93691 0.93536 0.91115 0.94289 0.92615 0.76312 0.87748 0.87506 0.87395 0.87585 0.82949 0.81289 0.78322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.84 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.21 2.24 44.24 0.10 14.31 16 4 H 0.00 0.02 7.58 -2.38 -0.02 0.01 16 5 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 N -0.71 -29.20 5.02 -446.09 -2.24 -31.44 16 14 C 0.50 19.07 6.40 87.66 0.56 19.63 16 15 O -0.58 -26.18 13.12 -3.03 -0.04 -26.22 16 16 C -0.12 -3.38 4.99 29.85 0.15 -3.23 16 17 C -0.15 -3.82 4.28 29.85 0.13 -3.69 16 18 C 0.43 10.76 6.93 26.42 0.18 10.95 16 19 O -0.49 -14.38 16.36 -3.53 -0.06 -14.44 16 20 C -0.34 -7.07 6.23 22.76 0.14 -6.93 16 21 C -0.05 -0.80 9.95 21.78 0.22 -0.58 16 22 C -0.17 -2.08 10.14 21.06 0.21 -1.87 16 23 C -0.21 -2.38 10.93 66.86 0.73 -1.65 16 24 S 0.24 3.82 22.42 -56.49 -1.27 2.55 16 25 H 0.03 1.35 7.85 -2.39 -0.02 1.34 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.97 5.65 -2.38 -0.01 1.95 16 28 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 31 H 0.40 14.34 8.54 -92.71 -0.79 13.55 16 32 H 0.10 2.77 8.10 -2.39 -0.02 2.75 16 33 H 0.11 2.77 8.10 -2.39 -0.02 2.75 16 34 H 0.11 2.71 8.10 -2.39 -0.02 2.69 16 35 H 0.11 2.72 8.10 -2.38 -0.02 2.70 16 36 H 0.15 2.57 8.02 -2.91 -0.02 2.55 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -67.81 333.57 2.82 -64.98 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.29 Total: 23.76 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.87 Total: -11.46 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.00 Total: -83.60 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.10 Total: -40.66 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.27 Total: 2.55 kcal Total: -67.81 2.82 -64.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.316 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds