Wall clock time and date at job start Tue Mar 31 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 O 1.21440 * 120.00308 * 0.02562 * 18 17 16 20 20 C 1.41232 * 119.99903 * 179.97438 * 18 17 16 21 21 C 1.37181 * 125.48216 * 180.02562 * 20 18 17 22 22 C 1.37200 * 113.24482 * 180.02562 * 21 20 18 23 23 C 1.34029 * 115.14918 * 359.97438 * 22 21 20 24 24 S 1.70616 * 110.99421 * 359.73164 * 23 22 21 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.07996 * 123.37840 * 359.97438 * 21 20 18 37 37 H 1.08002 * 122.42827 * 180.02562 * 22 21 20 38 38 H 1.07998 * 124.50375 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 8 -0.9621 4.5850 4.7805 20 6 -3.0201 5.1507 3.9875 21 6 -3.4876 5.7879 5.1088 22 6 -4.7626 6.2734 4.9638 23 6 -5.3261 6.0464 3.7691 24 16 -4.2594 5.2000 2.7410 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3974 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -2.9102 5.8959 6.0150 37 1 -5.2748 6.8011 5.7548 38 1 -6.3212 6.3618 3.4922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183948684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:41 Heat of formation + Delta-G solvation = -55.161672 kcal Electronic energy + Delta-G solvation = -20834.035783 eV Core-core repulsion = 17574.951558 eV Total energy + Delta-G solvation = -3259.084225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09111 -39.07052 -37.63248 -35.34269 -32.89338 -32.38675 -31.39558 -30.45280 -27.51864 -26.33313 -24.33043 -22.32182 -21.28816 -20.12248 -19.55152 -19.44331 -18.10245 -17.52882 -16.22028 -16.19837 -16.00271 -15.35298 -14.79090 -14.64700 -14.35071 -13.83123 -13.41329 -13.20910 -13.10586 -12.87346 -12.59053 -12.44814 -12.37805 -12.15141 -11.85395 -11.68020 -11.20567 -11.10179 -10.87612 -10.67708 -10.43079 -10.00767 -9.88102 -9.57608 -9.23628 -9.17191 -9.00486 -8.95381 -8.33198 -8.06047 -6.57027 -4.20898 -0.02392 1.17747 1.57384 1.87918 2.68432 3.27381 3.38923 3.44552 3.59283 3.73020 4.28953 4.42565 4.57266 4.75751 4.94505 5.05883 5.11138 5.17620 5.21789 5.45276 5.60853 5.72609 5.87051 5.87808 5.93740 5.99332 6.08539 6.10581 6.28805 6.70499 6.79911 6.96998 7.06063 7.32050 7.37949 7.43537 7.67646 8.24555 8.50380 8.72072 9.00780 9.48436 10.83604 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.003059 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.841120 B = 9152.181153 C = 9563.941589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.246 3.754 4 H 0.041 0.959 5 C -0.617 4.617 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.899 5.899 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.701 5.701 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.132 4.132 17 C -0.152 4.152 18 C 0.422 3.578 19 O -0.452 6.452 20 C -0.305 4.305 21 C -0.049 4.049 22 C -0.159 4.159 23 C -0.232 4.232 24 S 0.242 5.758 25 H 0.051 0.949 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.269 0.731 31 H 0.394 0.606 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.696 9.280 10.828 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.059 0.941 5 C -0.655 4.655 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.869 3.131 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.349 5.349 14 C 0.286 3.714 15 O -0.435 6.435 16 C -0.172 4.172 17 C -0.190 4.190 18 C 0.301 3.699 19 O -0.330 6.330 20 C -0.423 4.423 21 C -0.083 4.083 22 C -0.190 4.190 23 C -0.370 4.370 24 S 0.510 5.490 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.850 8.202 7.538 23.639 hybrid contribution 0.196 1.202 3.552 3.755 sum -20.654 9.405 11.090 25.259 Atomic orbital electron populations 1.21879 0.97404 0.98796 1.01922 1.22361 0.93804 0.99852 1.01812 1.19038 0.95745 0.88541 0.82388 0.94098 1.22113 0.89803 1.49423 1.04113 0.92087 1.25690 0.97552 0.92381 1.01223 1.70870 1.07092 1.40973 1.34318 0.84100 0.75469 0.77678 0.75831 1.20981 1.19501 1.20643 1.46258 1.14685 1.55837 1.18080 1.20406 0.82663 0.79159 0.89137 1.90645 1.50954 1.60381 1.41520 1.21436 0.96638 1.01889 0.97214 1.21796 0.98376 1.02459 0.96326 1.20218 0.84189 0.76165 0.89325 1.90590 1.51083 1.50251 1.41070 1.24269 1.02733 1.14739 1.00546 1.21038 0.94958 0.94058 0.98208 1.20064 0.95649 1.04870 0.98434 1.25612 1.05808 1.06121 0.99430 1.83383 1.02977 1.49058 1.13552 0.93024 0.95159 0.93293 0.91344 0.93125 0.92123 0.77359 0.88816 0.88728 0.87537 0.87581 0.82997 0.83847 0.81332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.15 0.32 -2.53 16 2 C -0.14 -3.11 5.28 -26.73 -0.14 -3.25 16 3 C 0.25 5.85 1.82 -69.08 -0.13 5.72 16 4 H 0.04 1.06 6.26 -51.93 -0.32 0.73 16 5 C -0.62 -16.69 9.01 -34.44 -0.31 -17.00 16 6 H 0.06 1.73 7.96 -52.48 -0.42 1.31 16 7 C 0.04 1.07 5.32 -17.82 -0.09 0.97 16 8 N -0.90 -26.88 13.69 55.43 0.76 -26.12 16 9 Si 1.04 25.08 26.27 -169.99 -4.47 20.62 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.04 5.67 56.52 0.32 -5.72 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.70 -14.02 5.03 -54.94 -0.28 -14.30 16 14 C 0.50 9.14 6.42 -10.99 -0.07 9.07 16 15 O -0.56 -11.49 13.12 5.56 0.07 -11.42 16 16 C -0.13 -1.85 4.99 -27.88 -0.14 -1.99 16 17 C -0.15 -1.88 4.28 -27.88 -0.12 -2.00 16 18 C 0.42 5.19 6.93 -33.17 -0.23 4.96 16 19 O -0.45 -6.64 16.36 5.42 0.09 -6.55 16 20 C -0.30 -3.18 6.23 -38.83 -0.24 -3.42 16 21 C -0.05 -0.45 9.95 -40.34 -0.40 -0.86 16 22 C -0.16 -1.17 10.14 -41.44 -0.42 -1.59 16 23 C -0.23 -1.57 10.93 29.25 0.32 -1.25 16 24 S 0.24 1.97 22.42 -107.50 -2.41 -0.44 16 25 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.95 5.63 -51.92 -0.29 0.66 16 28 H 0.07 1.60 4.74 -51.92 -0.25 1.35 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.95 8.73 -40.82 -0.36 7.60 16 31 H 0.39 7.14 8.53 -40.82 -0.35 6.79 16 32 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.11 1.30 8.10 -51.93 -0.42 0.88 16 35 H 0.11 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.15 1.32 8.02 -52.49 -0.42 0.90 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -31.98 329.13 -8.00 -39.98 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.07 Total: 6.43 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -1.66 Total: -13.16 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.48 Total: -40.41 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.16 Total: -17.97 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -4.47 Total: 20.62 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.41 Total: -0.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.98 -8.00 -39.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.183 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds