Wall clock time and date at job start Tue Mar 31 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 O 1.21440 * 120.00308 * 0.02562 * 18 17 16 20 20 C 1.41232 * 119.99903 * 179.97438 * 18 17 16 21 21 C 1.37181 * 125.48216 * 180.02562 * 20 18 17 22 22 C 1.37200 * 113.24482 * 180.02562 * 21 20 18 23 23 C 1.34029 * 115.14918 * 359.97438 * 22 21 20 24 24 S 1.70616 * 110.99421 * 359.73164 * 23 22 21 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.07996 * 123.37840 * 359.97438 * 21 20 18 37 37 H 1.08002 * 122.42827 * 180.02562 * 22 21 20 38 38 H 1.07998 * 124.50375 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 8 -0.9621 4.5850 4.7805 20 6 -3.0201 5.1507 3.9875 21 6 -3.4876 5.7879 5.1088 22 6 -4.7626 6.2734 4.9638 23 6 -5.3261 6.0464 3.7691 24 16 -4.2594 5.2000 2.7410 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3974 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -2.9102 5.8959 6.0150 37 1 -5.2748 6.8011 5.7548 38 1 -6.3212 6.3618 3.4922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948684.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:41 Heat of formation + Delta-G solvation = -75.767825 kcal Electronic energy + Delta-G solvation = -20834.929333 eV Core-core repulsion = 17574.951558 eV Total energy + Delta-G solvation = -3259.977775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17366 -40.44242 -38.32773 -37.10906 -34.44850 -34.08293 -32.96522 -31.26953 -29.25312 -27.39154 -25.27013 -24.17284 -22.46427 -21.50056 -21.09738 -20.20955 -19.74735 -18.79593 -17.55274 -17.27214 -17.01268 -16.79635 -16.07544 -15.80633 -15.49293 -15.10903 -14.81960 -14.66810 -14.43416 -14.21103 -13.85740 -13.70996 -13.66164 -13.33844 -13.14925 -12.92883 -12.67201 -12.46297 -12.30370 -12.16246 -11.82964 -11.77042 -11.38233 -11.09701 -10.96534 -10.67849 -10.47830 -9.90166 -9.76893 -9.55936 -8.79655 -6.44557 -0.72795 0.54098 0.97036 1.17610 1.45754 1.50916 1.70075 1.79879 1.92715 2.41302 2.44336 3.01354 3.18176 3.67662 4.06997 4.09005 4.09544 4.30477 4.34391 4.39641 4.43079 4.52667 4.58168 4.65723 4.80657 4.88768 4.92368 5.02060 5.12978 5.23647 5.24182 5.33346 5.34807 5.56778 5.68737 5.70937 6.00747 6.41731 6.52915 6.87646 7.29529 7.46766 8.59538 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.003059 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.841120 B = 9152.181153 C = 9563.941589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.614 4.614 6 H 0.036 0.964 7 C -0.008 4.008 8 N -0.930 5.930 9 Si 1.074 2.926 10 H -0.284 1.284 11 H -0.242 1.242 12 H -0.273 1.273 13 N -0.707 5.707 14 C 0.503 3.497 15 O -0.576 6.576 16 C -0.121 4.121 17 C -0.148 4.148 18 C 0.430 3.570 19 O -0.487 6.487 20 C -0.342 4.342 21 C -0.047 4.047 22 C -0.169 4.169 23 C -0.214 4.214 24 S 0.250 5.750 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.401 0.599 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.873 9.782 11.154 28.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.043 0.957 5 C -0.652 4.652 6 H 0.055 0.945 7 C -0.208 4.208 8 N -0.565 5.565 9 Si 0.896 3.104 10 H -0.210 1.210 11 H -0.166 1.166 12 H -0.198 1.198 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.457 6.457 16 C -0.161 4.161 17 C -0.186 4.186 18 C 0.312 3.688 19 O -0.368 6.368 20 C -0.460 4.460 21 C -0.081 4.081 22 C -0.198 4.198 23 C -0.352 4.352 24 S 0.518 5.482 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.236 0.764 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.169 0.831 37 H 0.186 0.814 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -24.051 8.714 7.891 26.770 hybrid contribution 1.113 1.139 3.524 3.867 sum -22.938 9.853 11.415 27.451 Atomic orbital electron populations 1.21763 0.95247 1.00377 1.01609 1.22255 0.95648 0.98311 1.01375 1.18744 0.93237 0.89780 0.83632 0.95737 1.22322 0.91772 1.48007 1.03110 0.94538 1.26888 0.97722 0.92060 1.04130 1.70978 1.08125 1.43456 1.33970 0.83701 0.75144 0.78722 0.72870 1.20983 1.16648 1.19820 1.46154 1.15831 1.56365 1.17165 1.21012 0.81512 0.78245 0.90201 1.90631 1.51385 1.60985 1.42719 1.21374 0.97834 1.02001 0.94860 1.21778 0.97310 1.02722 0.96789 1.20216 0.84666 0.75445 0.88496 1.90576 1.52238 1.52045 1.41934 1.24168 1.02863 1.16771 1.02202 1.21268 0.95794 0.93240 0.97821 1.20299 0.94962 1.05116 0.99473 1.26034 1.06538 1.04024 0.98575 1.83356 1.02514 1.49196 1.13114 0.93852 0.92618 0.93063 0.92380 0.92998 0.93411 0.76449 0.87548 0.88051 0.87331 0.86982 0.83123 0.81393 0.78302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.53 71.98 0.61 -4.38 16 2 C -0.14 -5.93 5.28 30.59 0.16 -5.77 16 3 C 0.25 11.80 1.82 44.24 0.08 11.88 16 4 H 0.02 1.26 6.26 -2.39 -0.01 1.24 16 5 C -0.61 -33.71 9.01 25.60 0.23 -33.48 16 6 H 0.04 2.13 7.96 -2.91 -0.02 2.11 16 7 C -0.01 -0.44 5.32 84.66 0.45 0.01 16 8 N -0.93 -56.81 13.69 21.45 0.29 -56.51 16 9 Si 1.07 50.23 26.27 68.60 1.80 52.03 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.24 -10.22 5.67 99.48 0.56 -9.66 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.71 -27.88 5.03 -446.11 -2.24 -30.12 16 14 C 0.50 17.81 6.42 87.66 0.56 18.37 16 15 O -0.58 -23.11 13.12 -3.03 -0.04 -23.15 16 16 C -0.12 -3.25 4.99 29.85 0.15 -3.10 16 17 C -0.15 -3.51 4.28 29.85 0.13 -3.38 16 18 C 0.43 10.26 6.93 26.42 0.18 10.44 16 19 O -0.49 -14.19 16.36 -3.53 -0.06 -14.25 16 20 C -0.34 -6.72 6.23 22.76 0.14 -6.58 16 21 C -0.05 -0.79 9.95 21.78 0.22 -0.58 16 22 C -0.17 -1.99 10.14 21.07 0.21 -1.77 16 23 C -0.21 -2.18 10.93 66.86 0.73 -1.45 16 24 S 0.25 3.54 22.42 -56.49 -1.27 2.27 16 25 H 0.04 1.69 7.88 -2.39 -0.02 1.67 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.89 5.63 -2.38 -0.01 1.87 16 28 H 0.06 2.62 4.74 -2.38 -0.01 2.60 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.26 15.75 8.73 -92.71 -0.81 14.94 16 31 H 0.40 14.49 8.53 -92.71 -0.79 13.70 16 32 H 0.11 2.63 8.10 -2.39 -0.02 2.61 16 33 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 34 H 0.11 2.53 8.10 -2.39 -0.02 2.51 16 35 H 0.11 2.52 8.10 -2.39 -0.02 2.50 16 36 H 0.15 2.50 8.02 -2.91 -0.02 2.47 16 37 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -69.13 329.13 2.46 -66.67 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.11 Total: 22.83 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 3.86 Total: -19.78 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.95 Total: -86.63 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.10 Total: -37.40 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 1.80 Total: 52.03 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.27 Total: 2.27 kcal Total: -69.13 2.46 -66.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948684.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.098 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds