Wall clock time and date at job start Tue Mar 31 2020 06:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46871 * 2 1 4 4 H 1.09000 * 109.47106 * 55.00127 * 3 2 1 5 5 C 1.50696 * 109.47145 * 175.00275 * 3 2 1 6 6 H 1.08001 * 120.00338 * 119.99785 * 5 3 2 7 7 C 1.37874 * 120.00035 * 300.00053 * 5 3 2 8 8 N 1.31515 * 119.99974 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47388 * 89.99883 * 9 7 5 11 11 H 1.48500 * 109.47363 * 210.00119 * 9 7 5 12 12 H 1.48497 * 109.47140 * 329.99500 * 9 7 5 13 13 N 1.46506 * 109.47007 * 295.00405 * 3 2 1 14 14 C 1.34773 * 119.99969 * 85.00250 * 13 3 2 15 15 O 1.21705 * 120.00134 * 359.71672 * 14 13 3 16 16 C 1.46586 * 119.99926 * 179.97438 * 14 13 3 17 17 C 1.36259 * 125.44070 * 179.72540 * 16 14 13 18 18 C 1.37980 * 114.02909 * 179.97438 * 17 16 14 19 19 C 1.35482 * 113.93634 * 359.97438 * 18 17 16 20 20 S 1.70432 * 111.18843 * 359.74471 * 19 18 17 21 21 C 1.51724 * 123.23028 * 179.97438 * 19 18 17 22 22 C 1.53365 * 107.94479 * 344.21698 * 21 19 18 23 23 O 1.43035 * 109.10811 * 47.92330 * 22 21 19 24 24 C 1.43004 * 114.15628 * 288.42041 * 23 22 21 25 25 H 1.09002 * 109.47394 * 299.99664 * 1 2 3 26 26 H 1.08997 * 109.47608 * 59.99897 * 1 2 3 27 27 H 1.09006 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47179 * 240.00791 * 2 1 3 29 29 H 1.08997 * 109.47608 * 120.00103 * 2 1 3 30 30 H 0.97002 * 119.99867 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99501 * 264.99481 * 13 3 2 32 32 H 1.07997 * 122.98832 * 359.97438 * 17 16 14 33 33 H 1.08992 * 109.76420 * 103.82987 * 21 19 18 34 34 H 1.08998 * 109.76382 * 224.55280 * 21 19 18 35 35 H 1.08997 * 109.53148 * 167.81418 * 22 21 19 36 36 H 1.09000 * 109.53198 * 288.04117 * 22 21 19 37 37 H 1.09002 * 109.70105 * 292.28945 * 24 23 22 38 38 H 1.09000 * 109.67121 * 171.72232 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8786 1.2278 8 7 5.4539 0.8806 1.3361 9 14 3.0964 0.1089 2.5699 10 1 2.8757 -1.3272 2.2632 11 1 3.7937 0.2348 3.8750 12 1 1.7878 0.8073 2.6387 13 7 1.6522 2.0976 -1.2518 14 6 0.4349 2.6644 -1.3668 15 8 -0.3442 2.6277 -0.4326 16 6 0.0472 3.3203 -2.6192 17 6 -1.1520 3.9216 -2.8578 18 6 -1.2660 4.4663 -4.1204 19 6 -0.1636 4.3034 -4.8910 20 16 1.0579 3.4643 -4.0491 21 6 -0.0604 4.8188 -6.3142 22 6 -1.4766 5.1498 -6.8008 23 8 -2.1448 5.9270 -5.8031 24 6 -2.5050 5.1903 -4.6315 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.8771 0.4822 2.1127 31 1 2.2717 2.1233 -1.9978 32 1 -1.9430 3.9678 -2.1240 33 1 0.5566 5.7169 -6.3371 34 1 0.3799 4.0528 -6.9526 35 1 -1.4195 5.7192 -7.7285 36 1 -2.0283 4.2255 -6.9725 37 1 -3.2795 4.4639 -4.8779 38 1 -2.8724 5.8743 -3.8665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183965561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:44 Heat of formation + Delta-G solvation = -52.856868 kcal Electronic energy + Delta-G solvation = -21354.088213 eV Core-core repulsion = 18095.103931 eV Total energy + Delta-G solvation = -3258.984282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95400 -39.18158 -36.59004 -35.26182 -32.74892 -32.41921 -31.64456 -29.76374 -27.61049 -26.02547 -24.90856 -22.90387 -22.35145 -20.83878 -19.81404 -18.82835 -17.98276 -17.05886 -16.59848 -15.89968 -15.79802 -15.38885 -15.14317 -14.82304 -14.43644 -14.00995 -13.62473 -13.35772 -13.11655 -13.02621 -12.75878 -12.47634 -12.11098 -11.92682 -11.83177 -11.54258 -11.25814 -11.10180 -10.96853 -10.91690 -10.65869 -9.97600 -9.95542 -9.65746 -9.34237 -9.25614 -8.79271 -8.66709 -8.46626 -8.12635 -6.23564 -4.26638 0.53409 1.42828 1.87284 2.27707 3.21724 3.33987 3.38770 3.52976 3.64295 3.80918 4.29319 4.34097 4.54018 4.70605 4.87814 5.03087 5.09850 5.12693 5.26465 5.29988 5.36648 5.47773 5.61664 5.87146 5.94043 5.99997 6.08857 6.16899 6.28069 6.62954 6.66505 6.79540 6.80885 6.92924 7.18766 7.24444 7.45602 8.07766 8.44205 8.70341 8.81442 9.36460 10.88383 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.003790 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.798791 B = 7386.967310 C = 7897.880378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.694 5.694 14 C 0.577 3.423 15 O -0.536 6.536 16 C -0.247 4.247 17 C -0.058 4.058 18 C -0.160 4.160 19 C -0.211 4.211 20 S 0.220 5.780 21 C -0.081 4.081 22 C 0.066 3.934 23 O -0.377 6.377 24 C 0.128 3.872 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 5.976 -16.090 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.361 3.639 15 O -0.417 6.417 16 C -0.368 4.368 17 C -0.090 4.090 18 C -0.174 4.174 19 C -0.331 4.331 20 S 0.491 5.509 21 C -0.121 4.121 22 C -0.013 4.013 23 O -0.296 6.296 24 C 0.049 3.951 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.169 0.831 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.611 5.585 -15.649 20.270 hybrid contribution -1.336 -0.358 0.821 1.609 sum -12.947 5.226 -14.827 20.366 Atomic orbital electron populations 1.21888 0.96894 0.99145 1.02302 1.22295 0.94420 0.99792 1.01252 1.19217 0.95835 0.88570 0.82361 0.93015 1.21027 0.88447 1.40055 1.08006 0.90153 1.24819 0.94884 0.95070 0.97617 1.69865 1.08676 1.44332 1.29837 0.86906 0.80995 0.79985 0.80902 1.20162 1.22083 1.18409 1.46104 1.14230 1.55619 1.18183 1.16913 0.82885 0.78757 0.85330 1.90796 1.51543 1.60263 1.39052 1.24727 1.00020 1.12141 0.99887 1.20332 0.96924 0.95884 0.95908 1.20058 0.97986 1.04952 0.94371 1.24532 0.99384 1.07285 1.01863 1.83005 1.14928 1.49911 1.03083 1.21016 0.99480 1.01656 0.89907 1.22617 0.90966 0.96393 0.91293 1.87972 1.77205 1.36862 1.27526 1.21522 0.91608 0.94824 0.87100 0.92780 0.92968 0.94847 0.92209 0.92582 0.92223 0.77471 0.83061 0.89157 0.89275 0.88034 0.92488 0.91493 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.14 -3.10 5.11 -26.73 -0.14 -3.23 16 3 C 0.24 5.80 1.83 -69.08 -0.13 5.67 16 4 H 0.05 1.36 6.64 -51.93 -0.34 1.01 16 5 C -0.54 -14.51 9.31 -34.44 -0.32 -14.84 16 6 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 7 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 9 Si 0.88 21.63 24.41 -169.99 -4.15 17.48 16 10 H -0.27 -6.51 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.94 16 13 N -0.69 -14.19 5.02 -56.27 -0.28 -14.47 16 14 C 0.58 11.32 6.36 -12.90 -0.08 11.24 16 15 O -0.54 -11.95 13.94 5.18 0.07 -11.87 16 16 C -0.25 -3.93 6.43 -36.93 -0.24 -4.17 16 17 C -0.06 -0.82 9.84 -40.39 -0.40 -1.22 16 18 C -0.16 -1.93 5.84 -104.89 -0.61 -2.54 16 19 C -0.21 -2.44 6.23 -34.79 -0.22 -2.66 16 20 S 0.22 2.80 22.10 -107.50 -2.38 0.43 16 21 C -0.08 -0.69 6.53 -27.19 -0.18 -0.86 16 22 C 0.07 0.51 6.82 37.35 0.25 0.76 16 23 O -0.38 -3.90 10.72 -35.23 -0.38 -4.28 16 24 C 0.13 1.24 7.12 36.82 0.26 1.50 16 25 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 26 H 0.05 1.05 5.64 -51.93 -0.29 0.75 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.30 3.21 -51.93 -0.17 1.14 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.39 7.25 7.65 -40.82 -0.31 6.94 16 32 H 0.15 2.04 8.05 -52.49 -0.42 1.61 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -31.64 316.38 -8.07 -39.71 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.93 Total: 4.52 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.57 Total: -10.82 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.49 Total: -39.94 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.31 Total: -16.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.15 Total: 17.48 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.38 Total: 0.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.64 -8.07 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183965561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.142 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds