Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46871 * 2 1 4 4 H 1.09000 * 109.47106 * 55.00127 * 3 2 1 5 5 C 1.50696 * 109.47145 * 175.00275 * 3 2 1 6 6 H 1.08001 * 120.00338 * 119.99785 * 5 3 2 7 7 C 1.37874 * 120.00035 * 300.00053 * 5 3 2 8 8 N 1.31515 * 119.99974 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 120.00017 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47388 * 89.99883 * 9 7 5 11 11 H 1.48500 * 109.47363 * 210.00119 * 9 7 5 12 12 H 1.48497 * 109.47140 * 329.99500 * 9 7 5 13 13 N 1.46506 * 109.47007 * 295.00405 * 3 2 1 14 14 C 1.34773 * 119.99969 * 85.00250 * 13 3 2 15 15 O 1.21705 * 120.00134 * 359.71672 * 14 13 3 16 16 C 1.46586 * 119.99926 * 179.97438 * 14 13 3 17 17 C 1.36259 * 125.44070 * 179.72540 * 16 14 13 18 18 C 1.37980 * 114.02909 * 179.97438 * 17 16 14 19 19 C 1.35482 * 113.93634 * 359.97438 * 18 17 16 20 20 S 1.70432 * 111.18843 * 359.74471 * 19 18 17 21 21 C 1.51724 * 123.23028 * 179.97438 * 19 18 17 22 22 C 1.53365 * 107.94479 * 344.21698 * 21 19 18 23 23 O 1.43035 * 109.10811 * 47.92330 * 22 21 19 24 24 C 1.43004 * 114.15628 * 288.42041 * 23 22 21 25 25 H 1.09002 * 109.47394 * 299.99664 * 1 2 3 26 26 H 1.08997 * 109.47608 * 59.99897 * 1 2 3 27 27 H 1.09006 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47179 * 240.00791 * 2 1 3 29 29 H 1.08997 * 109.47608 * 120.00103 * 2 1 3 30 30 H 0.97002 * 119.99867 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99501 * 264.99481 * 13 3 2 32 32 H 1.07997 * 122.98832 * 359.97438 * 17 16 14 33 33 H 1.08992 * 109.76420 * 103.82987 * 21 19 18 34 34 H 1.08998 * 109.76382 * 224.55280 * 21 19 18 35 35 H 1.08997 * 109.53148 * 167.81418 * 22 21 19 36 36 H 1.09000 * 109.53198 * 288.04117 * 22 21 19 37 37 H 1.09002 * 109.70105 * 292.28945 * 24 23 22 38 38 H 1.09000 * 109.67121 * 171.72232 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8786 1.2278 8 7 5.4539 0.8806 1.3361 9 14 3.0964 0.1089 2.5699 10 1 2.8757 -1.3272 2.2632 11 1 3.7937 0.2348 3.8750 12 1 1.7878 0.8073 2.6387 13 7 1.6522 2.0976 -1.2518 14 6 0.4349 2.6644 -1.3668 15 8 -0.3442 2.6277 -0.4326 16 6 0.0472 3.3203 -2.6192 17 6 -1.1520 3.9216 -2.8578 18 6 -1.2660 4.4663 -4.1204 19 6 -0.1636 4.3034 -4.8910 20 16 1.0579 3.4643 -4.0491 21 6 -0.0604 4.8188 -6.3142 22 6 -1.4766 5.1498 -6.8008 23 8 -2.1448 5.9270 -5.8031 24 6 -2.5050 5.1903 -4.6315 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.8771 0.4822 2.1127 31 1 2.2717 2.1233 -1.9978 32 1 -1.9430 3.9678 -2.1240 33 1 0.5566 5.7169 -6.3371 34 1 0.3799 4.0528 -6.9526 35 1 -1.4195 5.7192 -7.7285 36 1 -2.0283 4.2255 -6.9725 37 1 -3.2795 4.4639 -4.8779 38 1 -2.8724 5.8743 -3.8665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183965561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -74.838044 kcal Electronic energy + Delta-G solvation = -21355.041388 eV Core-core repulsion = 18095.103931 eV Total energy + Delta-G solvation = -3259.937457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06724 -40.45853 -37.68020 -36.90471 -34.47092 -33.64793 -33.18573 -30.81112 -29.44149 -26.83093 -26.06319 -24.56171 -23.50990 -22.23351 -21.48053 -20.08386 -19.14884 -18.46933 -17.81176 -17.42259 -17.00613 -16.59229 -16.24387 -16.03512 -15.97627 -15.26689 -15.08320 -14.73097 -14.33219 -14.07539 -13.95206 -13.85260 -13.72817 -13.58582 -13.04628 -12.84991 -12.80380 -12.46827 -12.40398 -12.14595 -11.88668 -11.69315 -11.44100 -11.29238 -11.00458 -10.88183 -10.69764 -9.96613 -9.66834 -9.40648 -8.40652 -6.47231 -0.55816 0.38862 0.84997 1.21749 1.26004 1.34227 1.44113 2.18339 2.24079 2.29349 2.91037 2.94833 3.56437 3.67643 3.89932 3.99817 4.19206 4.26759 4.28007 4.31221 4.41669 4.46721 4.61486 4.69044 4.73987 4.77130 4.89153 4.94431 4.96248 5.07276 5.14951 5.19718 5.33000 5.33504 5.47298 5.54146 6.08744 6.14639 6.52624 6.71477 7.12456 7.28194 8.74474 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.032634 B = 0.003790 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.798791 B = 7386.967310 C = 7897.880378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.026 0.974 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.936 3.064 10 H -0.257 1.257 11 H -0.291 1.291 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.579 3.421 15 O -0.570 6.570 16 C -0.293 4.293 17 C -0.044 4.044 18 C -0.173 4.173 19 C -0.197 4.197 20 S 0.238 5.762 21 C -0.084 4.084 22 C 0.061 3.939 23 O -0.393 6.393 24 C 0.129 3.871 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.400 0.600 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 5.975 -18.109 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.044 0.956 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.168 4.168 8 N -0.570 5.570 9 Si 0.763 3.237 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.366 3.634 15 O -0.452 6.452 16 C -0.413 4.413 17 C -0.078 4.078 18 C -0.186 4.186 19 C -0.317 4.317 20 S 0.509 5.491 21 C -0.123 4.123 22 C -0.017 4.017 23 O -0.312 6.312 24 C 0.051 3.949 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.169 0.831 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.313 5.584 -17.702 22.842 hybrid contribution -0.794 -0.235 1.279 1.524 sum -14.107 5.349 -16.422 22.301 Atomic orbital electron populations 1.21772 0.95169 1.00736 1.01543 1.22213 0.95902 0.98192 1.01277 1.18872 0.93511 0.89828 0.83192 0.95594 1.21243 0.90108 1.39070 1.07221 0.92687 1.25534 0.95787 0.95704 0.99750 1.69971 1.10257 1.45852 1.30886 0.86036 0.79305 0.80072 0.78283 1.18240 1.21869 1.18457 1.45927 1.15119 1.56132 1.17351 1.17290 0.81873 0.77901 0.86287 1.90760 1.52246 1.61513 1.40724 1.24336 1.01985 1.15025 0.99974 1.20514 0.96091 0.94479 0.96725 1.20285 0.99411 1.05338 0.93565 1.25087 0.98354 1.05116 1.03151 1.82897 1.14690 1.49953 1.01526 1.21256 1.00571 1.02519 0.87970 1.22863 0.90115 0.97190 0.91512 1.87963 1.77504 1.37788 1.27895 1.21638 0.90711 0.95204 0.87365 0.94218 0.93100 0.91961 0.91263 0.93360 0.91945 0.76545 0.83085 0.88368 0.86982 0.85478 0.91541 0.89758 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.51 71.98 0.61 -4.70 16 2 C -0.14 -6.02 5.11 30.59 0.16 -5.86 16 3 C 0.25 12.12 1.83 44.24 0.08 12.20 16 4 H 0.03 1.40 6.64 -2.39 -0.02 1.39 16 5 C -0.54 -29.80 9.31 25.60 0.24 -29.56 16 6 H 0.05 3.24 7.98 -2.91 -0.02 3.22 16 7 C 0.03 1.84 5.45 84.65 0.46 2.30 16 8 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 9 Si 0.94 44.81 24.41 68.60 1.67 46.48 16 10 H -0.26 -11.49 6.83 99.48 0.68 -10.81 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.26 -12.38 6.53 99.48 0.65 -11.73 16 13 N -0.70 -29.01 5.02 -450.15 -2.26 -31.27 16 14 C 0.58 23.07 6.36 86.42 0.55 23.62 16 15 O -0.57 -25.88 13.94 -4.36 -0.06 -25.94 16 16 C -0.29 -9.25 6.43 23.99 0.15 -9.10 16 17 C -0.04 -1.22 9.84 21.75 0.21 -1.00 16 18 C -0.17 -3.83 5.84 -20.04 -0.12 -3.95 16 19 C -0.20 -4.08 6.23 25.38 0.16 -3.92 16 20 S 0.24 5.77 22.10 -56.49 -1.25 4.53 16 21 C -0.08 -1.12 6.53 30.30 0.20 -0.92 16 22 C 0.06 0.71 6.82 72.10 0.49 1.20 16 23 O -0.39 -6.91 10.72 -148.98 -1.60 -8.51 16 24 C 0.13 2.17 7.12 71.76 0.51 2.68 16 25 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 26 H 0.05 2.00 5.64 -2.39 -0.01 1.99 16 27 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.07 2.86 8.14 -2.38 -0.02 2.85 16 29 H 0.05 2.18 3.21 -2.39 -0.01 2.18 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.40 15.11 7.65 -92.71 -0.71 14.40 16 32 H 0.15 4.02 8.05 -2.91 -0.02 3.99 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -69.08 316.38 0.82 -68.26 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.30 Total: 19.12 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 3.71 Total: -17.02 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.96 Total: -86.93 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.66 Total: -34.44 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -1.25 Total: 4.53 kcal Total: -69.08 0.82 -68.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183965561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.578 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds