Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21592 * 119.99836 * 359.97438 * 14 13 3 16 16 C 1.47526 * 120.00029 * 179.97438 * 14 13 3 17 17 C 1.39987 * 120.59916 * 359.72256 * 16 14 13 18 18 C 1.38339 * 118.35098 * 179.73271 * 17 16 14 19 19 N 1.48012 * 120.27370 * 180.26222 * 18 17 16 20 20 O 1.21797 * 120.00372 * 180.30575 * 19 18 17 21 21 O 1.21802 * 120.00094 * 0.30176 * 19 18 17 22 22 C 1.38358 * 119.45629 * 0.56398 * 18 17 16 23 23 N 1.31887 * 121.18598 * 359.69508 * 22 18 17 24 24 C 1.32239 * 121.79622 * 0.02562 * 23 22 18 25 25 O 1.35428 * 119.79490 * 180.02562 * 24 23 22 26 26 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 28 28 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 30 30 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 31 31 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 33 33 H 1.08001 * 120.82151 * 0.02562 * 17 16 14 34 34 H 1.07996 * 119.40837 * 179.72345 * 22 18 17 35 35 H 0.96710 * 113.99731 * 270.02033 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3386 2.6316 0.4487 16 6 0.0608 3.3178 2.6438 17 6 0.9492 3.3544 3.7250 18 6 0.5444 3.9870 4.8868 19 7 1.4519 4.0558 6.0541 20 8 1.0883 4.6091 7.0764 21 8 2.5622 3.5590 5.9923 22 6 -0.7181 4.5494 4.9508 23 7 -1.5413 4.4987 3.9217 24 6 -1.2023 3.9112 2.7865 25 8 -2.0794 3.8832 1.7551 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.8033 0.3145 -3.1314 32 1 2.2841 2.1188 1.9977 33 1 1.9282 2.9041 3.6523 34 1 -1.0350 5.0392 5.8597 35 1 -2.6608 3.1103 1.7540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184160786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -40.125006 kcal Electronic energy + Delta-G solvation = -23682.673437 eV Core-core repulsion = 19877.948036 eV Total energy + Delta-G solvation = -3804.725401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.51794 -41.17467 -38.99686 -37.59121 -36.81650 -35.25343 -33.78352 -32.49159 -31.85261 -30.82639 -27.25870 -26.73883 -25.21286 -23.66807 -22.93396 -21.22639 -19.80447 -19.54138 -19.38949 -18.98528 -17.82033 -17.47173 -17.30964 -16.53113 -15.84271 -15.44184 -15.13720 -14.58258 -14.27759 -14.03894 -13.68875 -13.31961 -12.83628 -12.37865 -12.28585 -11.83360 -11.67534 -11.63664 -11.47872 -11.36334 -11.12175 -10.91994 -10.84038 -10.58216 -10.42191 -10.35777 -9.92085 -9.75198 -9.39631 -9.25660 -8.62774 -8.13422 -6.25981 -4.33640 -0.64812 0.07547 0.88887 1.00498 2.50001 2.90800 3.19192 3.26125 3.27026 3.39919 3.53062 3.72605 3.92032 4.05069 4.27247 4.42339 4.85832 4.94940 5.07843 5.20272 5.42370 6.02638 6.17567 6.19719 6.40554 6.79448 6.82330 6.96893 7.06193 7.14769 7.16126 7.36170 7.38657 7.54804 7.65789 7.91264 8.33357 8.56283 8.78429 9.33072 10.81726 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.004713 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.270388 B = 5939.848264 C = 7290.644275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.270 3.730 4 H 0.060 0.940 5 C -0.542 4.542 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.695 5.695 14 C 0.546 3.454 15 O -0.515 6.515 16 C -0.187 4.187 17 C 0.030 3.970 18 C -0.122 4.122 19 N 0.037 4.963 20 O -0.155 6.155 21 O -0.149 6.149 22 C 0.215 3.785 23 N -0.494 5.494 24 C 0.415 3.585 25 O -0.446 6.446 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.266 0.734 32 H 0.387 0.613 33 H 0.174 0.826 34 H 0.192 0.808 35 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 3.690 12.711 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.169 3.831 4 H 0.078 0.922 5 C -0.580 4.580 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.515 5.515 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.343 5.343 14 C 0.329 3.671 15 O -0.392 6.392 16 C -0.195 4.195 17 C 0.004 3.996 18 C -0.208 4.208 19 N 0.557 4.443 20 O -0.371 6.371 21 O -0.366 6.366 22 C 0.054 3.946 23 N -0.214 5.214 24 C 0.236 3.764 25 O -0.255 6.255 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.221 0.779 33 H 0.191 0.809 34 H 0.209 0.791 35 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.295 4.386 11.013 15.063 hybrid contribution 2.124 -0.851 0.599 2.366 sum -7.170 3.535 11.612 14.098 Atomic orbital electron populations 1.21852 0.98126 0.98388 1.01234 1.21878 0.92885 0.99614 1.01721 1.18930 0.94880 0.89065 0.80269 0.92237 1.21140 0.90263 1.44148 1.02448 0.91938 1.24870 0.98679 0.94823 0.94964 1.69952 1.35597 1.42685 1.03312 0.86485 0.84669 0.78768 0.77377 1.20309 1.21079 1.19808 1.46539 1.13657 1.55032 1.19076 1.17447 0.83972 0.80129 0.85576 1.90837 1.50712 1.58906 1.38772 1.21741 0.96022 1.04393 0.97359 1.21757 1.00329 0.89130 0.88386 1.22153 0.94945 1.14073 0.89641 1.43283 1.01101 0.98427 1.01474 1.94546 1.80172 1.43316 1.19034 1.94605 1.05846 1.47031 1.89161 1.22744 0.85552 0.89227 0.97077 1.67792 1.34785 1.19156 0.99675 1.19620 0.87639 0.84647 0.84475 1.84694 1.50632 1.49585 1.40603 0.95533 0.92752 0.94494 0.94577 0.89531 0.92383 0.77921 0.80885 0.79126 0.71924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.52 37.15 0.32 -2.42 16 2 C -0.12 -2.68 5.49 -26.74 -0.15 -2.83 16 3 C 0.27 6.21 2.11 -69.09 -0.15 6.07 16 4 H 0.06 1.61 7.55 -51.93 -0.39 1.22 16 5 C -0.54 -13.44 8.67 -34.44 -0.30 -13.73 16 6 H 0.06 1.48 7.73 -52.48 -0.41 1.08 16 7 C 0.07 1.82 5.19 -17.82 -0.09 1.73 16 8 N -0.88 -23.66 12.00 55.43 0.67 -22.99 16 9 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.69 -12.81 4.98 -55.98 -0.28 -13.08 16 14 C 0.55 9.48 6.35 -12.48 -0.08 9.40 16 15 O -0.51 -10.35 12.33 -16.49 -0.20 -10.55 16 16 C -0.19 -2.52 5.90 -104.69 -0.62 -3.14 16 17 C 0.03 0.35 9.13 -38.89 -0.36 0.00 16 18 C -0.12 -1.33 6.87 -79.87 -0.55 -1.88 16 19 N 0.04 0.45 4.45 34.00 0.15 0.60 16 20 O -0.15 -1.88 18.46 -29.46 -0.54 -2.42 16 21 O -0.15 -2.00 18.51 -29.46 -0.55 -2.55 16 22 C 0.21 2.08 10.70 -17.48 -0.19 1.89 16 23 N -0.49 -5.59 10.37 -12.98 -0.13 -5.72 16 24 C 0.42 5.24 7.77 -16.61 -0.13 5.12 16 25 O -0.45 -5.62 11.66 -39.75 -0.46 -6.09 16 26 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.05 1.15 7.87 -51.93 -0.41 0.75 16 28 H 0.04 0.68 5.64 -51.93 -0.29 0.39 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.13 6.64 -51.93 -0.34 1.79 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.39 6.12 6.63 -40.82 -0.27 5.85 16 33 H 0.17 1.82 6.14 -52.49 -0.32 1.49 16 34 H 0.19 1.29 7.60 -52.49 -0.40 0.89 16 35 H 0.42 3.41 9.06 45.56 0.41 3.82 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -29.72 309.78 -6.39 -36.12 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -2.40 Total: 7.00 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.28 Total: 0.19 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.40 Total: -41.20 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.76 Total: -21.61 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.72 -6.39 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184160786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.009 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds