Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21592 * 119.99836 * 359.97438 * 14 13 3 16 16 C 1.47526 * 120.00029 * 179.97438 * 14 13 3 17 17 C 1.39987 * 120.59916 * 359.72256 * 16 14 13 18 18 C 1.38339 * 118.35098 * 179.73271 * 17 16 14 19 19 N 1.48012 * 120.27370 * 180.26222 * 18 17 16 20 20 O 1.21797 * 120.00372 * 180.30575 * 19 18 17 21 21 O 1.21802 * 120.00094 * 0.30176 * 19 18 17 22 22 C 1.38358 * 119.45629 * 0.56398 * 18 17 16 23 23 N 1.31887 * 121.18598 * 359.69508 * 22 18 17 24 24 C 1.32239 * 121.79622 * 0.02562 * 23 22 18 25 25 O 1.35428 * 119.79490 * 180.02562 * 24 23 22 26 26 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 28 28 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 29 29 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 30 30 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 31 31 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 33 33 H 1.08001 * 120.82151 * 0.02562 * 17 16 14 34 34 H 1.07996 * 119.40837 * 179.72345 * 22 18 17 35 35 H 0.96710 * 113.99731 * 270.02033 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3386 2.6316 0.4487 16 6 0.0608 3.3178 2.6438 17 6 0.9492 3.3544 3.7250 18 6 0.5444 3.9870 4.8868 19 7 1.4519 4.0558 6.0541 20 8 1.0883 4.6091 7.0764 21 8 2.5622 3.5590 5.9923 22 6 -0.7181 4.5494 4.9508 23 7 -1.5413 4.4987 3.9217 24 6 -1.2023 3.9112 2.7865 25 8 -2.0794 3.8832 1.7551 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.8033 0.3145 -3.1314 32 1 2.2841 2.1188 1.9977 33 1 1.9282 2.9041 3.6523 34 1 -1.0350 5.0392 5.8597 35 1 -2.6608 3.1103 1.7540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184160786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -62.045742 kcal Electronic energy + Delta-G solvation = -23683.623992 eV Core-core repulsion = 19877.948036 eV Total energy + Delta-G solvation = -3805.675955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.45763 -42.19489 -40.38536 -38.55623 -37.77119 -36.93727 -34.92656 -34.11757 -33.14839 -32.22004 -29.01984 -27.70304 -26.31670 -25.13579 -24.22519 -22.58285 -21.40428 -20.70264 -20.35486 -19.95629 -18.93365 -18.74645 -18.31412 -17.58934 -17.42405 -17.05909 -16.40975 -16.18057 -15.56463 -15.07265 -14.82578 -14.60628 -14.46013 -13.93858 -13.47523 -13.29337 -13.23185 -12.94298 -12.80621 -12.65720 -12.60046 -12.33539 -12.22582 -12.11971 -11.81302 -11.63729 -11.49213 -11.11181 -10.84176 -10.73569 -10.55476 -9.76943 -8.20983 -6.34700 -1.57504 -0.88707 -0.06092 0.07621 1.44834 1.45731 1.49822 1.54670 1.94153 2.11300 2.30153 2.43755 2.86977 2.95820 3.08530 3.11746 3.46901 3.82661 4.02387 4.19306 4.46830 4.52768 4.53270 4.70617 5.03809 5.08316 5.23164 5.38373 5.42854 5.57288 5.72574 5.81870 5.95542 6.04602 6.35527 6.38007 6.71217 6.77524 7.23612 7.39758 8.86909 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.004713 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.270388 B = 5939.848264 C = 7290.644275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.279 3.721 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.696 5.696 14 C 0.549 3.451 15 O -0.547 6.547 16 C -0.203 4.203 17 C 0.045 3.955 18 C -0.124 4.124 19 N 0.039 4.961 20 O -0.134 6.134 21 O -0.186 6.186 22 C 0.238 3.762 23 N -0.497 5.497 24 C 0.423 3.577 25 O -0.461 6.461 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.265 0.735 32 H 0.401 0.599 33 H 0.181 0.819 34 H 0.227 0.773 35 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 4.264 15.149 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.155 4.155 3 C 0.176 3.824 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.345 5.345 14 C 0.334 3.666 15 O -0.426 6.426 16 C -0.211 4.211 17 C 0.019 3.981 18 C -0.210 4.210 19 N 0.558 4.442 20 O -0.357 6.357 21 O -0.394 6.394 22 C 0.077 3.923 23 N -0.216 5.216 24 C 0.245 3.755 25 O -0.274 6.274 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.198 0.802 34 H 0.244 0.756 35 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -9.396 4.921 13.456 17.133 hybrid contribution 2.042 -0.927 -0.065 2.243 sum -7.354 3.994 13.390 15.790 Atomic orbital electron populations 1.21694 0.96388 0.99549 1.00623 1.21725 0.94383 0.98667 1.00712 1.18466 0.93888 0.89315 0.80759 0.97152 1.21529 0.91377 1.43480 1.02596 0.91012 1.25676 1.02821 0.94672 0.94734 1.70091 1.37318 1.43852 1.03846 0.85492 0.79643 0.78999 0.77045 1.19583 1.21469 1.19055 1.46236 1.14742 1.55466 1.18083 1.17830 0.82944 0.79233 0.86571 1.90820 1.51474 1.59918 1.40420 1.21180 0.97215 1.06591 0.96102 1.21764 1.00161 0.88183 0.88005 1.22118 0.95234 1.14630 0.89029 1.43363 1.01034 0.98158 1.01623 1.94530 1.79864 1.42185 1.19118 1.94628 1.06589 1.48613 1.89548 1.23341 0.84367 0.87119 0.97450 1.67949 1.34854 1.19339 0.99497 1.19653 0.87195 0.83940 0.84758 1.84640 1.51019 1.50715 1.41011 0.93367 0.95073 0.93336 0.93347 0.92567 0.92577 0.76321 0.80159 0.75629 0.69964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.52 71.98 0.61 -4.35 16 2 C -0.12 -5.18 5.49 30.59 0.17 -5.01 16 3 C 0.28 13.18 2.11 44.25 0.09 13.27 16 4 H 0.01 0.60 7.55 -2.38 -0.02 0.58 16 5 C -0.55 -27.63 8.67 25.60 0.22 -27.41 16 6 H 0.07 3.37 7.73 -2.91 -0.02 3.35 16 7 C 0.02 1.14 5.19 84.65 0.44 1.58 16 8 N -0.91 -50.69 12.00 21.45 0.26 -50.43 16 9 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 13 N -0.70 -25.70 4.98 -449.30 -2.24 -27.94 16 14 C 0.55 19.03 6.35 86.69 0.55 19.58 16 15 O -0.55 -22.41 12.33 16.81 0.21 -22.20 16 16 C -0.20 -5.20 5.90 -19.91 -0.12 -5.32 16 17 C 0.05 0.96 9.13 22.72 0.21 1.16 16 18 C -0.12 -2.35 6.87 36.43 0.25 -2.10 16 19 N 0.04 0.86 4.45 -46.34 -0.21 0.65 16 20 O -0.13 -2.80 18.46 18.89 0.35 -2.45 16 21 O -0.19 -4.68 18.51 18.88 0.35 -4.33 16 22 C 0.24 3.71 10.70 84.71 0.91 4.62 16 23 N -0.50 -9.77 10.37 -307.99 -3.19 -12.96 16 24 C 0.42 9.95 7.77 85.13 0.66 10.61 16 25 O -0.46 -11.18 11.66 -66.42 -0.77 -11.96 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.03 1.35 7.87 -2.39 -0.02 1.33 16 28 H 0.05 1.78 5.64 -2.38 -0.01 1.77 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.86 6.64 -2.38 -0.02 2.84 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.40 12.42 6.63 -92.71 -0.61 11.80 16 33 H 0.18 3.50 6.14 -2.91 -0.02 3.48 16 34 H 0.23 1.91 7.60 -2.91 -0.02 1.89 16 35 H 0.43 6.70 9.06 -74.05 -0.67 6.03 16 Total: -1.00 -65.01 309.78 0.67 -64.34 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.10 Total: 17.78 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.00 Total: 6.64 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -5.38 Total: -90.68 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: 0.13 Total: -40.94 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -65.01 0.67 -64.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184160786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.299 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds