Wall clock time and date at job start Tue Mar 31 2020 07:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46697 * 2 1 4 4 S 1.81400 * 109.47100 * 119.99396 * 2 1 3 5 5 C 1.76198 * 103.00151 * 188.73843 * 4 2 1 6 6 C 1.39041 * 120.05053 * 6.04906 * 5 4 2 7 7 C 1.38084 * 120.03139 * 180.02562 * 6 5 4 8 8 C 1.38238 * 120.13176 * 359.97438 * 7 6 5 9 9 C 1.38786 * 120.10573 * 0.02562 * 8 7 6 10 10 O 1.35902 * 120.01256 * 179.97438 * 9 8 7 11 11 C 1.38596 * 119.96870 * 359.72666 * 9 8 7 12 12 C 1.50693 * 109.47388 * 239.99812 * 2 1 3 13 13 O 1.21289 * 119.99920 * 264.99669 * 12 2 1 14 14 N 1.34778 * 120.00301 * 84.99771 * 12 2 1 15 15 C 1.46498 * 119.99937 * 359.97438 * 14 12 2 16 16 C 1.46498 * 119.99808 * 179.97438 * 14 12 2 17 17 C 1.50699 * 109.47153 * 90.00223 * 16 14 12 18 18 H 1.08000 * 120.00030 * 359.97438 * 17 16 14 19 19 C 1.37875 * 120.00354 * 179.97438 * 17 16 14 20 20 N 1.31521 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00592 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46825 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47036 * 119.99633 * 21 19 17 24 24 H 1.48500 * 109.47172 * 240.00296 * 21 19 17 25 25 H 1.08996 * 109.47505 * 295.24956 * 1 2 3 26 26 H 1.09006 * 109.47094 * 175.24776 * 1 2 3 27 27 H 1.09001 * 109.47562 * 55.25333 * 1 2 3 28 28 H 1.08006 * 119.98349 * 0.02820 * 6 5 4 29 29 H 1.07999 * 119.93601 * 180.02562 * 7 6 5 30 30 H 1.08005 * 119.94896 * 180.02562 * 8 7 6 31 31 H 0.96702 * 113.99594 * 90.00537 * 10 9 8 32 32 H 1.07996 * 120.06840 * 180.30087 * 11 9 8 33 33 H 1.09007 * 109.46916 * 90.00018 * 15 14 12 34 34 H 1.08994 * 109.47247 * 210.00049 * 15 14 12 35 35 H 1.09003 * 109.47312 * 330.00274 * 15 14 12 36 36 H 1.09006 * 109.46657 * 209.99887 * 16 14 12 37 37 H 1.08997 * 109.47529 * 329.99731 * 16 14 12 38 38 H 0.97001 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 3.8666 -0.5332 1.4454 6 6 4.3951 0.3288 0.4909 7 6 5.7525 0.5803 0.4629 8 6 6.5892 -0.0231 1.3831 9 6 6.0677 -0.8844 2.3383 10 8 6.8921 -1.4770 3.2418 11 6 4.7052 -1.1359 2.3736 12 6 2.0324 -0.7104 -1.2304 13 8 2.3209 -1.8872 -1.1758 14 7 2.1611 -0.0381 -2.3914 15 6 1.8121 1.3831 -2.4575 16 6 2.6500 -0.7287 -3.5873 17 6 1.4835 -1.3093 -4.3444 18 1 0.4784 -1.1774 -3.9717 19 6 1.6992 -2.0088 -5.5128 20 7 2.9231 -2.1690 -5.9669 21 14 0.2533 -2.7290 -6.4509 22 1 -1.0086 -2.4118 -5.7350 23 1 0.2087 -2.1456 -7.8157 24 1 0.4102 -4.2025 -6.5471 25 1 -0.3634 0.4383 0.9294 26 1 -0.3633 -1.0242 -0.0851 27 1 -0.3634 0.5857 -0.8444 28 1 3.7435 0.8018 -0.2289 29 1 6.1613 1.2504 -0.2789 30 1 7.6505 0.1761 1.3588 31 1 7.0158 -0.9677 4.0545 32 1 4.2971 -1.8020 3.1192 33 1 2.6906 1.9843 -2.2229 34 1 1.4636 1.6254 -3.4614 35 1 1.0225 1.5973 -1.7372 36 1 3.1805 -0.0208 -4.2243 37 1 3.3272 -1.5304 -3.2927 38 1 3.0749 -2.6614 -6.7887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185674352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:02 Heat of formation + Delta-G solvation = -46.725670 kcal Electronic energy + Delta-G solvation = -21484.860734 eV Core-core repulsion = 18226.142321 eV Total energy + Delta-G solvation = -3258.718413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.64135 -39.17148 -36.69805 -34.91169 -33.33186 -32.27450 -31.07557 -29.79830 -27.86099 -26.07145 -24.62558 -23.05664 -22.66976 -22.12486 -18.88807 -18.62884 -16.98904 -16.68964 -16.46929 -16.29194 -15.67676 -15.46980 -14.94193 -14.63893 -14.36814 -14.03887 -13.72832 -13.18767 -12.87589 -12.63989 -12.53343 -12.24235 -12.10976 -11.95924 -11.90675 -11.67338 -11.45867 -11.24713 -10.91803 -10.69991 -10.60456 -10.21080 -10.12211 -9.68038 -9.64874 -9.01624 -8.78493 -8.47102 -7.73962 -7.28992 -6.07712 -4.12833 1.09784 1.24640 1.50900 2.33782 3.25961 3.27725 3.35970 3.39881 3.52852 3.83729 4.11414 4.41163 4.76646 4.84127 4.86586 5.00386 5.06964 5.16186 5.27049 5.43554 5.46120 5.58294 5.61792 5.67679 5.77713 5.80577 6.03039 6.13951 6.17146 6.30033 6.37444 6.64972 6.95040 7.38064 7.45108 7.53717 7.87877 8.18263 8.27648 8.83076 8.97980 9.52465 11.00474 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.004355 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.987894 B = 6427.739615 C = 7018.079865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 H 0.107 0.893 4 S -0.059 6.059 5 C -0.061 4.061 6 C -0.136 4.136 7 C -0.079 4.079 8 C -0.154 4.154 9 C 0.120 3.880 10 O -0.497 6.497 11 C -0.129 4.129 12 C 0.503 3.497 13 O -0.513 6.513 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.247 3.753 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.388 0.612 32 H 0.132 0.868 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 10.669 16.467 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.243 4.243 3 H 0.125 0.875 4 S 0.187 5.813 5 C -0.174 4.174 6 C -0.160 4.160 7 C -0.099 4.099 8 C -0.176 4.176 9 C 0.074 3.926 10 O -0.307 6.307 11 C -0.154 4.154 12 C 0.285 3.715 13 O -0.388 6.388 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.128 3.872 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.244 0.756 32 H 0.150 0.850 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.375 8.878 16.667 18.934 hybrid contribution 0.022 0.705 -1.336 1.511 sum 1.397 9.583 15.331 18.134 Atomic orbital electron populations 1.21531 0.89372 1.04425 1.03308 1.23933 1.02082 1.02867 0.95457 0.87452 1.85144 0.98146 1.69838 1.28187 1.21653 0.97892 0.99308 0.98566 1.21207 0.96429 0.99557 0.98761 1.20921 0.92672 0.98731 0.97606 1.21378 1.00445 0.98285 0.97457 1.18260 0.88064 0.94007 0.92270 1.84853 1.66745 1.48676 1.30390 1.20911 0.92105 1.01635 1.00738 1.19955 0.79766 0.87642 0.84127 1.90748 1.48926 1.14961 1.84115 1.48099 1.64170 1.09742 1.10897 1.21764 0.99160 0.82470 1.03434 1.19326 0.95323 0.92727 0.79864 1.21442 0.93390 1.34628 1.07131 0.92383 1.24938 0.95936 0.95878 0.97309 1.69944 1.19601 1.41451 1.22265 0.86441 0.82471 0.79070 0.79439 1.19795 1.20936 1.20823 0.90742 0.90741 0.90021 0.85891 0.85203 0.85308 0.75642 0.85012 0.93748 0.90277 0.92252 0.94888 0.93807 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.00 37.16 0.33 -1.30 16 2 C -0.11 -1.68 1.57 -27.89 -0.04 -1.72 16 3 H 0.11 1.35 5.70 -51.92 -0.30 1.05 16 4 S -0.06 -0.92 20.62 -107.50 -2.22 -3.13 16 5 C -0.06 -0.95 6.04 -39.06 -0.24 -1.18 16 6 C -0.14 -2.04 8.83 -39.34 -0.35 -2.39 16 7 C -0.08 -1.05 10.03 -39.64 -0.40 -1.45 16 8 C -0.15 -1.93 9.98 -39.38 -0.39 -2.32 16 9 C 0.12 1.57 6.70 -39.25 -0.26 1.31 16 10 O -0.50 -5.52 13.50 -19.43 -0.26 -5.78 16 11 C -0.13 -1.85 9.73 -39.22 -0.38 -2.23 16 12 C 0.50 10.31 5.24 -10.99 -0.06 10.26 16 13 O -0.51 -13.07 15.72 5.55 0.09 -12.99 16 14 N -0.60 -12.26 2.86 -182.96 -0.52 -12.79 16 15 C 0.08 1.13 9.87 59.85 0.59 1.72 16 16 C 0.25 6.39 5.16 -5.20 -0.03 6.36 16 17 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 18 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.08 0.96 6.76 -51.93 -0.35 0.61 16 28 H 0.12 1.83 5.12 -52.48 -0.27 1.56 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.39 2.14 9.06 45.56 0.41 2.55 16 32 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.80 16 35 H 0.06 0.71 5.13 -51.93 -0.27 0.44 16 36 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -35.21 333.90 -7.88 -43.10 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.07 Total: 2.01 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.64 Total: -6.41 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.21 Total: -38.62 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.18 Total: -18.77 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -2.22 Total: -3.13 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.21 -7.88 -43.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185674352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.627 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds