Wall clock time and date at job start Tue Mar 31 2020 07:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46908 * 2 1 4 4 H 1.08996 * 109.47068 * 303.00643 * 3 2 1 5 5 C 1.50697 * 109.46776 * 183.00402 * 3 2 1 6 6 H 1.08003 * 120.00001 * 245.35863 * 5 3 2 7 7 C 1.37879 * 119.99889 * 65.36823 * 5 3 2 8 8 N 1.31516 * 119.99963 * 192.23632 * 7 5 3 9 9 Si 1.86798 * 120.00253 * 12.23482 * 7 5 3 10 10 H 1.48497 * 109.47339 * 90.82634 * 9 7 5 11 11 H 1.48503 * 109.47138 * 210.82837 * 9 7 5 12 12 H 1.48502 * 109.46802 * 330.82775 * 9 7 5 13 13 N 1.46505 * 109.46875 * 63.00404 * 3 2 1 14 14 S 1.65606 * 119.99726 * 215.91278 * 13 3 2 15 15 O 1.42107 * 106.39990 * 311.09402 * 14 13 3 16 16 O 1.42095 * 106.39793 * 178.17204 * 14 13 3 17 17 C 1.76202 * 107.21524 * 64.63161 * 14 13 3 18 18 C 1.32562 * 119.99751 * 114.78488 * 17 14 13 19 19 C 1.47812 * 119.99785 * 179.97438 * 18 17 14 20 20 C 1.39541 * 120.13897 * 179.97438 * 19 18 17 21 21 C 1.37976 * 119.85217 * 179.97438 * 20 19 18 22 22 C 1.38344 * 120.14353 * 359.97438 * 21 20 19 23 23 C 1.38344 * 120.28718 * 0.02562 * 22 21 20 24 24 C 1.37972 * 120.14217 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46938 * 184.80270 * 1 2 3 26 26 H 1.09001 * 109.47417 * 304.79731 * 1 2 3 27 27 H 1.09000 * 109.47464 * 64.80445 * 1 2 3 28 28 H 1.08993 * 109.47084 * 240.00242 * 2 1 3 29 29 H 1.09000 * 109.47109 * 119.99634 * 2 1 3 30 30 H 0.97001 * 120.00169 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00328 * 35.91951 * 13 3 2 32 32 H 1.08002 * 120.00242 * 294.77741 * 17 14 13 33 33 H 1.07995 * 120.00162 * 359.97438 * 18 17 14 34 34 H 1.07995 * 120.07488 * 359.96233 * 20 19 18 35 35 H 1.07999 * 119.92510 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.85264 * 179.73900 * 22 21 20 37 37 H 1.07999 * 119.92679 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.07161 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6333 1.9717 -0.8618 5 6 3.5451 1.4432 -0.0745 6 1 4.1266 1.8185 0.7547 7 6 4.1798 0.9648 -1.2011 8 7 5.4752 0.7390 -1.1802 9 14 3.1997 0.6374 -2.7573 10 1 3.1925 1.8576 -3.6037 11 1 3.8224 -0.4823 -3.5082 12 1 1.8049 0.2767 -2.3971 13 7 1.6116 2.1119 1.2308 14 16 1.1934 3.7140 1.1995 15 8 2.2384 4.3881 0.5117 16 8 0.7895 4.0490 2.5200 17 6 -0.2421 3.8587 0.1881 18 6 -1.3921 4.2469 0.7212 19 6 -2.5962 4.3688 -0.1273 20 6 -3.8083 4.7767 0.4309 21 6 -4.9285 4.8890 -0.3668 22 6 -4.8517 4.5987 -1.7172 23 6 -3.6530 4.1938 -2.2767 24 6 -2.5255 4.0775 -1.4901 25 1 -0.3633 -1.0241 0.0860 26 1 -0.3634 0.5865 0.8439 27 1 -0.3634 0.4375 -0.9299 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9218 0.4028 -1.9730 31 1 1.5729 1.6168 2.0639 32 1 -0.1852 3.6311 -0.8661 33 1 -1.4491 4.4742 1.7755 34 1 -3.8695 5.0039 1.4849 35 1 -5.8672 5.2050 0.0640 36 1 -5.7325 4.6841 -2.3364 37 1 -3.5997 3.9682 -3.3316 38 1 -1.5903 3.7617 -1.9281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186429545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:04 Heat of formation + Delta-G solvation = -31.817637 kcal Electronic energy + Delta-G solvation = -21530.454240 eV Core-core repulsion = 18272.382288 eV Total energy + Delta-G solvation = -3258.071952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.46084 -36.72026 -36.20634 -35.23914 -34.52680 -32.19098 -31.26710 -31.01640 -29.74182 -27.21345 -24.00058 -22.78236 -22.75859 -20.70626 -20.44320 -18.53199 -17.73123 -17.12975 -16.74647 -16.23762 -15.66333 -15.27286 -14.97936 -14.61073 -14.05391 -13.81036 -13.65241 -13.48508 -13.26888 -12.81777 -12.55159 -12.25955 -12.02501 -11.67271 -11.61977 -11.52126 -11.37158 -11.22808 -10.97335 -10.91797 -10.83744 -10.69553 -10.45320 -10.08737 -9.81414 -9.38327 -9.23007 -8.70874 -8.59120 -8.30520 -6.12311 -4.09143 0.37918 1.02284 1.13455 1.98949 3.22489 3.28352 3.34394 3.59666 3.74731 4.16588 4.35802 4.50962 4.58954 4.68992 4.82983 4.99656 5.10913 5.14107 5.21732 5.25502 5.64127 5.73368 5.77213 5.81041 5.93895 5.94777 6.00554 6.15923 6.17501 6.22007 6.43847 6.49152 6.49886 6.66210 6.68299 6.99814 7.20411 7.56917 7.82525 8.47387 8.98632 9.49377 11.01183 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.005056 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.581115 B = 5536.532499 C = 6334.153025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.134 4.134 3 C 0.257 3.743 4 H 0.031 0.969 5 C -0.527 4.527 6 H 0.083 0.917 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.851 3.149 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.248 1.248 13 N -1.094 6.094 14 S 2.681 3.319 15 O -0.942 6.942 16 O -0.986 6.986 17 C -0.733 4.733 18 C 0.033 3.967 19 C -0.085 4.085 20 C -0.094 4.094 21 C -0.127 4.127 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.092 4.092 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.410 0.590 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 4.307 0.504 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.174 4.174 3 C 0.151 3.849 4 H 0.049 0.951 5 C -0.566 4.566 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.677 3.323 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.172 1.172 13 N -0.854 5.854 14 S 2.770 3.230 15 O -0.932 6.932 16 O -0.976 6.976 17 C -0.838 4.838 18 C 0.013 3.987 19 C -0.086 4.086 20 C -0.112 4.112 21 C -0.145 4.145 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.110 4.110 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.244 0.756 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.019 5.020 0.605 20.648 hybrid contribution -0.939 -0.730 -1.276 1.745 sum -20.958 4.291 -0.671 21.404 Atomic orbital electron populations 1.21879 0.98031 1.00375 1.00921 1.22292 0.93185 0.99265 1.02646 1.18803 0.95833 0.89488 0.80787 0.95091 1.21294 0.88844 1.42276 1.04216 0.89920 1.24865 0.94748 0.94483 0.98360 1.69927 1.09209 1.44133 1.29258 0.87450 0.81834 0.78499 0.84509 1.20180 1.21016 1.17194 1.55238 1.82069 1.30008 1.18074 1.02105 0.74187 0.73501 0.73243 1.93649 1.52271 1.72227 1.75070 1.93517 1.84127 1.83218 1.36786 1.34302 1.18234 1.13772 1.17442 1.21969 0.90412 0.87077 0.99206 1.19272 0.93710 1.01756 0.93869 1.21399 0.91911 0.97711 1.00181 1.21122 0.98517 1.00856 0.94019 1.21313 0.97839 0.98157 0.95301 1.21165 0.92776 1.00127 1.00179 1.21511 0.99067 0.97314 0.93058 0.93809 0.93082 0.93740 0.91135 0.91698 0.92524 0.75630 0.82358 0.83907 0.85234 0.85635 0.85848 0.85576 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.84 37.16 0.37 -2.06 16 2 C -0.13 -2.59 4.85 -26.73 -0.13 -2.72 16 3 C 0.26 5.58 1.73 -69.08 -0.12 5.46 16 4 H 0.03 0.67 6.58 -51.93 -0.34 0.33 16 5 C -0.53 -14.35 9.29 -34.44 -0.32 -14.67 16 6 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 7 C 0.08 2.20 5.38 -17.82 -0.10 2.11 16 8 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 9 Si 0.85 20.00 25.81 -169.99 -4.39 15.62 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.25 -5.18 5.27 56.52 0.30 -4.88 16 13 N -1.09 -20.45 4.73 -5.88 -0.03 -20.48 16 14 S 2.68 49.32 5.80 -107.50 -0.62 48.70 16 15 O -0.94 -21.71 17.79 -57.17 -1.02 -22.73 16 16 O -0.99 -18.42 16.89 -57.17 -0.97 -19.38 16 17 C -0.73 -11.12 9.56 28.82 0.28 -10.85 16 18 C 0.03 0.44 9.42 -37.58 -0.35 0.08 16 19 C -0.08 -1.02 5.87 -105.01 -0.62 -1.64 16 20 C -0.09 -0.93 9.79 -39.19 -0.38 -1.32 16 21 C -0.13 -1.10 10.03 -39.64 -0.40 -1.49 16 22 C -0.11 -0.94 10.04 -39.50 -0.40 -1.33 16 23 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 24 C -0.09 -1.08 9.40 -39.19 -0.37 -1.45 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.73 7.56 -51.93 -0.39 0.33 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.44 4.65 -51.93 -0.24 1.20 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.41 6.66 8.85 -34.47 -0.30 6.36 16 32 H 0.16 2.29 6.04 -52.49 -0.32 1.98 16 33 H 0.14 1.69 7.21 -52.49 -0.38 1.31 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.52 6.17 -52.49 -0.32 1.19 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -33.91 329.75 -9.14 -43.05 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.92 Total: 7.59 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -2.94 Total: -31.49 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.75 Total: -46.33 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.98 Total: -42.11 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.39 Total: 15.62 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.62 Total: 48.70 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.91 -9.14 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186429545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.233 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds