Wall clock time and date at job start Tue Mar 31 2020 07:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46908 * 2 1 4 4 H 1.08996 * 109.47068 * 303.00643 * 3 2 1 5 5 C 1.50697 * 109.46776 * 183.00402 * 3 2 1 6 6 H 1.08003 * 120.00001 * 245.35863 * 5 3 2 7 7 C 1.37879 * 119.99889 * 65.36823 * 5 3 2 8 8 N 1.31516 * 119.99963 * 192.23632 * 7 5 3 9 9 Si 1.86798 * 120.00253 * 12.23482 * 7 5 3 10 10 H 1.48497 * 109.47339 * 90.82634 * 9 7 5 11 11 H 1.48503 * 109.47138 * 210.82837 * 9 7 5 12 12 H 1.48502 * 109.46802 * 330.82775 * 9 7 5 13 13 N 1.46505 * 109.46875 * 63.00404 * 3 2 1 14 14 S 1.65606 * 119.99726 * 215.91278 * 13 3 2 15 15 O 1.42107 * 106.39990 * 311.09402 * 14 13 3 16 16 O 1.42095 * 106.39793 * 178.17204 * 14 13 3 17 17 C 1.76202 * 107.21524 * 64.63161 * 14 13 3 18 18 C 1.32562 * 119.99751 * 114.78488 * 17 14 13 19 19 C 1.47812 * 119.99785 * 179.97438 * 18 17 14 20 20 C 1.39541 * 120.13897 * 179.97438 * 19 18 17 21 21 C 1.37976 * 119.85217 * 179.97438 * 20 19 18 22 22 C 1.38344 * 120.14353 * 359.97438 * 21 20 19 23 23 C 1.38344 * 120.28718 * 0.02562 * 22 21 20 24 24 C 1.37972 * 120.14217 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.46938 * 184.80270 * 1 2 3 26 26 H 1.09001 * 109.47417 * 304.79731 * 1 2 3 27 27 H 1.09000 * 109.47464 * 64.80445 * 1 2 3 28 28 H 1.08993 * 109.47084 * 240.00242 * 2 1 3 29 29 H 1.09000 * 109.47109 * 119.99634 * 2 1 3 30 30 H 0.97001 * 120.00169 * 180.02562 * 8 7 5 31 31 H 0.96993 * 120.00328 * 35.91951 * 13 3 2 32 32 H 1.08002 * 120.00242 * 294.77741 * 17 14 13 33 33 H 1.07995 * 120.00162 * 359.97438 * 18 17 14 34 34 H 1.07995 * 120.07488 * 359.96233 * 20 19 18 35 35 H 1.07999 * 119.92510 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.85264 * 179.73900 * 22 21 20 37 37 H 1.07999 * 119.92679 * 179.97438 * 23 22 21 38 38 H 1.07994 * 120.07161 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6333 1.9717 -0.8618 5 6 3.5451 1.4432 -0.0745 6 1 4.1266 1.8185 0.7547 7 6 4.1798 0.9648 -1.2011 8 7 5.4752 0.7390 -1.1802 9 14 3.1997 0.6374 -2.7573 10 1 3.1925 1.8576 -3.6037 11 1 3.8224 -0.4823 -3.5082 12 1 1.8049 0.2767 -2.3971 13 7 1.6116 2.1119 1.2308 14 16 1.1934 3.7140 1.1995 15 8 2.2384 4.3881 0.5117 16 8 0.7895 4.0490 2.5200 17 6 -0.2421 3.8587 0.1881 18 6 -1.3921 4.2469 0.7212 19 6 -2.5962 4.3688 -0.1273 20 6 -3.8083 4.7767 0.4309 21 6 -4.9285 4.8890 -0.3668 22 6 -4.8517 4.5987 -1.7172 23 6 -3.6530 4.1938 -2.2767 24 6 -2.5255 4.0775 -1.4901 25 1 -0.3633 -1.0241 0.0860 26 1 -0.3634 0.5865 0.8439 27 1 -0.3634 0.4375 -0.9299 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.9218 0.4028 -1.9730 31 1 1.5729 1.6168 2.0639 32 1 -0.1852 3.6311 -0.8661 33 1 -1.4491 4.4742 1.7755 34 1 -3.8695 5.0039 1.4849 35 1 -5.8672 5.2050 0.0640 36 1 -5.7325 4.6841 -2.3364 37 1 -3.5997 3.9682 -3.3316 38 1 -1.5903 3.7617 -1.9281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186429545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:03 Heat of formation + Delta-G solvation = -56.516796 kcal Electronic energy + Delta-G solvation = -21531.525276 eV Core-core repulsion = 18272.382288 eV Total energy + Delta-G solvation = -3259.142988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.20708 -38.29930 -37.82799 -36.83553 -35.49951 -34.26687 -32.46145 -31.97268 -30.60902 -29.05192 -24.92005 -24.50815 -23.51186 -22.14867 -21.61346 -19.94448 -19.14689 -18.71087 -18.00080 -17.58477 -17.14884 -16.48109 -16.18150 -15.78127 -15.47054 -15.08831 -14.77019 -14.56615 -14.31574 -14.05204 -14.01525 -13.68008 -13.54997 -13.15818 -13.13710 -13.00633 -12.64975 -12.60291 -12.42434 -12.23546 -11.98318 -11.90532 -11.76759 -11.67348 -11.56594 -11.12838 -10.63138 -10.06692 -9.93764 -9.55022 -8.27161 -6.28827 -0.60526 -0.36360 0.43012 1.07394 1.34946 1.40325 1.46719 2.27522 2.36686 2.77415 2.88721 3.07007 3.50422 3.66299 3.84917 4.03748 4.13824 4.25905 4.30419 4.38759 4.47786 4.48972 4.51628 4.68687 4.81539 4.90409 4.98796 5.07934 5.11759 5.17993 5.24964 5.46276 5.46905 5.52654 5.58069 5.61511 5.67830 5.98888 6.27164 6.44472 6.75150 7.33825 8.90600 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.005056 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.581115 B = 5536.532499 C = 6334.153025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.258 3.742 4 H 0.040 0.960 5 C -0.536 4.536 6 H 0.032 0.968 7 C 0.016 3.984 8 N -0.944 5.944 9 Si 0.911 3.089 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.201 1.201 13 N -1.094 6.094 14 S 2.691 3.309 15 O -1.001 7.001 16 O -0.994 6.994 17 C -0.750 4.750 18 C 0.064 3.936 19 C -0.115 4.115 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.100 4.100 23 C -0.135 4.135 24 C -0.108 4.108 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.419 0.581 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.143 0.857 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.701 4.146 -0.379 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.152 3.848 4 H 0.058 0.942 5 C -0.575 4.575 6 H 0.050 0.950 7 C -0.182 4.182 8 N -0.584 5.584 9 Si 0.733 3.267 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.123 1.123 13 N -0.854 5.854 14 S 2.785 3.215 15 O -0.991 6.991 16 O -0.984 6.984 17 C -0.860 4.860 18 C 0.043 3.957 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.118 4.118 23 C -0.153 4.153 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.255 0.745 32 H 0.183 0.817 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.078 4.847 -0.214 25.543 hybrid contribution 0.484 -0.555 -0.904 1.166 sum -24.594 4.292 -1.118 24.991 Atomic orbital electron populations 1.21838 0.94564 1.02291 1.02031 1.22159 0.96205 0.96577 1.02252 1.18661 0.92206 0.91770 0.82210 0.94245 1.21659 0.92019 1.41107 1.02698 0.94999 1.25811 0.95775 0.94451 1.02203 1.70097 1.11575 1.46358 1.30380 0.86480 0.82774 0.78159 0.79262 1.20579 1.20773 1.12270 1.55045 1.82593 1.29923 1.17826 1.01354 0.74414 0.72710 0.73052 1.93579 1.55927 1.73489 1.76119 1.93490 1.84272 1.83186 1.37495 1.33538 1.16870 1.18587 1.16984 1.22275 0.90194 0.83214 0.99971 1.19303 0.93900 1.04456 0.94026 1.21723 0.91406 0.96474 1.01496 1.21529 0.99256 0.99902 0.94009 1.21748 0.98272 0.95983 0.95789 1.21440 0.92698 1.00146 1.01014 1.21656 0.99684 0.97895 0.93399 0.91507 0.91789 0.92927 0.92068 0.91766 0.92567 0.74542 0.81723 0.82647 0.83237 0.82674 0.82985 0.83951 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 9.84 71.98 0.71 -3.44 16 2 C -0.13 -4.87 4.85 30.60 0.15 -4.72 16 3 C 0.26 11.23 1.73 44.25 0.08 11.30 16 4 H 0.04 1.67 6.58 -2.39 -0.02 1.66 16 5 C -0.54 -30.45 9.29 25.60 0.24 -30.21 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 7 C 0.02 0.90 5.38 84.65 0.46 1.36 16 8 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 9 Si 0.91 41.35 25.81 68.60 1.77 43.12 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.20 -7.56 5.27 99.48 0.52 -7.04 16 13 N -1.09 -41.33 4.73 -172.51 -0.82 -42.14 16 14 S 2.69 100.54 5.80 -56.49 -0.33 100.22 16 15 O -1.00 -48.35 17.79 -128.00 -2.28 -50.63 16 16 O -0.99 -37.10 16.89 -128.00 -2.16 -39.26 16 17 C -0.75 -22.01 9.56 66.67 0.64 -21.37 16 18 C 0.06 1.55 9.42 23.65 0.22 1.77 16 19 C -0.12 -2.47 5.87 -20.12 -0.12 -2.58 16 20 C -0.09 -1.49 9.79 22.52 0.22 -1.27 16 21 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 22 C -0.10 -1.28 10.04 22.32 0.22 -1.06 16 23 C -0.14 -2.21 10.03 22.23 0.22 -1.99 16 24 C -0.11 -2.30 9.40 22.52 0.21 -2.08 16 25 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.06 1.61 7.56 -2.39 -0.02 1.59 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.35 4.65 -2.39 -0.01 2.34 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.42 13.74 8.85 -96.75 -0.86 12.89 16 32 H 0.17 4.62 6.04 -2.91 -0.02 4.61 16 33 H 0.16 3.30 7.21 -2.91 -0.02 3.28 16 34 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.12 2.68 6.17 -2.91 -0.02 2.67 16 Total: -1.00 -78.05 329.75 -0.01 -78.05 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.03 Total: 25.52 kcal Atomic # 6 Polarization: -59.18 SS G_CDS: 3.47 Total: -55.71 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -0.52 Total: -101.30 kcal Atomic # 8 Polarization: -85.45 SS G_CDS: -4.44 Total: -89.89 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.77 Total: 43.12 kcal Atomic # 16 Polarization: 100.54 SS G_CDS: -0.33 Total: 100.22 kcal Total: -78.05 -0.01 -78.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186429545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.537 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds