Wall clock time and date at job start Tue Mar 31 2020 07:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 H 1.09004 * 109.47363 * 54.99662 * 3 2 1 5 5 C 1.52998 * 109.47330 * 174.99793 * 3 2 1 6 6 O 1.42909 * 109.46978 * 54.99586 * 5 3 2 7 7 N 1.46498 * 109.47090 * 295.00116 * 3 2 1 8 8 C 1.34774 * 120.00348 * 85.00196 * 7 3 2 9 9 O 1.21549 * 119.99904 * 359.97438 * 8 7 3 10 10 C 1.47867 * 120.00079 * 180.02562 * 8 7 3 11 11 C 1.39669 * 120.09925 * 0.02562 * 10 8 7 12 12 C 1.38043 * 120.03800 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.24168 * 359.75416 * 12 11 10 14 14 C 1.39179 * 120.20357 * 0.50266 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.76778 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.49916 * 14 13 12 25 25 H 1.09003 * 109.47154 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.47120 * 60.00059 * 1 2 3 27 27 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47127 * 239.99538 * 2 1 3 29 29 H 1.08998 * 109.46726 * 119.99766 * 2 1 3 30 30 H 1.08995 * 109.47364 * 174.99481 * 5 3 2 31 31 H 1.09001 * 109.47005 * 295.00147 * 5 3 2 32 32 H 0.96699 * 113.99932 * 180.02562 * 6 5 3 33 33 H 0.97008 * 119.99747 * 264.99997 * 7 3 2 34 34 H 1.08002 * 119.98588 * 359.96545 * 11 10 8 35 35 H 1.08000 * 119.87868 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.89464 * 180.25271 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.12436 * 180.27334 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 4.1294 0.6402 -0.9121 7 7 1.6525 2.0974 -1.2518 8 6 0.4352 2.6644 -1.3670 9 8 -0.3412 2.6319 -0.4324 10 6 0.0439 3.3250 -2.6307 11 6 0.9339 3.3622 -3.7064 12 6 0.5670 3.9787 -4.8858 13 6 -0.6819 4.5568 -5.0097 14 6 -1.5747 4.5303 -3.9423 15 16 -3.1637 5.2742 -4.1034 16 6 -2.8281 6.8637 -3.4214 17 1 -1.8199 7.1279 -3.1381 18 6 -3.8588 7.7761 -3.2484 19 7 -3.6079 8.9638 -2.7393 20 14 -5.6026 7.3191 -3.7378 21 1 -6.2939 6.6950 -2.5811 22 1 -6.3368 8.5414 -4.1526 23 1 -5.5635 6.3575 -4.8687 24 6 -1.2143 3.9122 -2.7520 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9356 2.4654 0.0366 31 1 3.8499 1.0377 1.0961 32 1 5.0952 0.5955 -0.8936 33 1 2.2720 2.1231 -1.9978 34 1 1.9097 2.9084 -3.6156 35 1 1.2570 4.0056 -5.7161 36 1 -0.9646 5.0341 -5.9363 37 1 -4.3286 9.6015 -2.6180 38 1 -1.9066 3.8862 -1.9235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188220951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:58 Heat of formation + Delta-G solvation = -71.466676 kcal Electronic energy + Delta-G solvation = -20938.734506 eV Core-core repulsion = 17678.943242 eV Total energy + Delta-G solvation = -3259.791263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24743 -38.33018 -37.33315 -35.09154 -32.67439 -32.48960 -30.71078 -30.52792 -28.77025 -25.67120 -24.07189 -23.41181 -22.37608 -20.92606 -20.39532 -18.37339 -17.85269 -17.28652 -16.36867 -15.80229 -15.50522 -15.23882 -14.94295 -14.67469 -14.42256 -14.16580 -13.82194 -13.42103 -13.21774 -12.92090 -12.68757 -12.49698 -12.25020 -11.91903 -11.55109 -11.33603 -11.17459 -11.14641 -11.08617 -10.88470 -10.60566 -10.42372 -9.92172 -9.73678 -9.19531 -9.07171 -9.04411 -8.61851 -8.13866 -7.12256 -6.32157 -4.07441 1.13619 1.61634 2.86799 3.07645 3.14402 3.28097 3.39541 3.51453 3.86211 4.10437 4.27256 4.48574 4.72719 4.85699 4.91278 4.97876 5.06242 5.08755 5.12389 5.20703 5.24107 5.45493 5.59381 5.70310 5.81241 5.85480 5.93839 5.96873 6.15593 6.20945 6.42039 6.49813 6.55054 6.59934 6.85140 7.13438 7.18428 7.55534 7.92072 8.33041 8.45423 9.11808 10.77326 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003569 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.437798 B = 7843.350835 C = 8213.064918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.147 3.853 4 H 0.100 0.900 5 C 0.067 3.933 6 O -0.569 6.569 7 N -0.722 5.722 8 C 0.563 3.437 9 O -0.530 6.530 10 C -0.153 4.153 11 C -0.085 4.085 12 C -0.140 4.140 13 C -0.052 4.052 14 C -0.086 4.086 15 S -0.112 6.112 16 C -0.509 4.509 17 H 0.091 0.909 18 C 0.095 3.905 19 N -0.876 5.876 20 Si 0.858 3.142 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.239 1.239 24 C -0.017 4.017 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.380 0.620 33 H 0.402 0.598 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.272 0.728 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.602 -16.132 1.801 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.042 3.958 4 H 0.118 0.882 5 C -0.011 4.011 6 O -0.375 6.375 7 N -0.375 5.375 8 C 0.352 3.648 9 O -0.407 6.407 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.160 4.160 13 C -0.073 4.073 14 C -0.196 4.196 15 S 0.121 5.879 16 C -0.656 4.656 17 H 0.109 0.891 18 C -0.114 4.114 19 N -0.512 5.512 20 Si 0.682 3.318 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.163 1.163 24 C -0.038 4.038 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.238 0.762 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.301 -16.433 1.973 21.233 hybrid contribution 1.385 0.693 0.258 1.570 sum 14.686 -15.740 2.231 21.642 Atomic orbital electron populations 1.21845 0.94828 1.00535 1.03350 1.21830 0.96816 0.95492 1.02405 1.21132 0.92039 0.94336 0.88313 0.88212 1.22513 0.93195 0.94571 0.90858 1.86494 1.25525 1.72292 1.53181 1.45873 1.16931 1.58110 1.16634 1.18331 0.81320 0.77536 0.87642 1.90778 1.51031 1.58878 1.40019 1.19862 0.96660 1.05084 0.94168 1.21198 0.98091 0.98175 0.92979 1.21046 0.96958 1.00245 0.97707 1.21890 0.92133 0.94705 0.98586 1.22186 1.01184 1.01115 0.95164 1.83061 1.07494 1.15400 1.81909 1.22250 0.99322 0.95696 1.48312 0.89108 1.24743 0.99039 0.94149 0.93442 1.69928 1.33532 1.05770 1.42018 0.86732 0.84409 0.79537 0.81080 1.19021 1.19807 1.16326 1.21887 0.94097 0.90827 0.97028 0.92181 0.92218 0.93687 0.91124 0.91645 0.92785 0.92099 0.77260 0.76177 0.86299 0.85658 0.84948 0.91820 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.51 37.16 0.32 -1.56 16 2 C -0.13 -1.32 5.33 -26.73 -0.14 -1.46 16 3 C 0.15 1.51 2.66 -67.93 -0.18 1.33 16 4 H 0.10 1.15 7.58 -51.93 -0.39 0.76 16 5 C 0.07 0.47 6.79 37.16 0.25 0.72 16 6 O -0.57 -3.84 12.61 -35.23 -0.44 -4.29 16 7 N -0.72 -8.58 4.96 -54.75 -0.27 -8.85 16 8 C 0.56 8.96 6.34 -12.32 -0.08 8.88 16 9 O -0.53 -9.99 13.48 5.32 0.07 -9.92 16 10 C -0.15 -2.57 5.87 -105.00 -0.62 -3.18 16 11 C -0.09 -1.18 9.54 -39.12 -0.37 -1.55 16 12 C -0.14 -1.99 10.02 -39.68 -0.40 -2.39 16 13 C -0.05 -0.92 9.79 -39.25 -0.38 -1.31 16 14 C -0.09 -1.81 5.45 -39.00 -0.21 -2.02 16 15 S -0.11 -2.75 19.38 -107.50 -2.08 -4.84 16 16 C -0.51 -14.70 10.01 30.92 0.31 -14.40 16 17 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 18 C 0.10 2.76 5.50 -17.45 -0.10 2.66 16 19 N -0.88 -26.44 13.97 55.49 0.78 -25.66 16 20 Si 0.86 21.15 27.74 -169.99 -4.71 16.44 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 24 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 25 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 26 H 0.06 0.90 5.64 -51.93 -0.29 0.60 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.38 0.92 9.12 45.56 0.42 1.33 16 33 H 0.40 4.04 6.41 -40.82 -0.26 3.78 16 34 H 0.12 1.20 6.40 -52.49 -0.34 0.87 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.14 3.03 7.65 -52.49 -0.40 2.63 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -33.61 331.61 -7.83 -41.44 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.19 Total: 5.67 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.97 Total: -14.98 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.50 Total: -34.51 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.37 Total: -14.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -7.83 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188220951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.028 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds