Wall clock time and date at job start Tue Mar 31 2020 07:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 H 1.09004 * 109.47363 * 54.99662 * 3 2 1 5 5 C 1.52998 * 109.47330 * 174.99793 * 3 2 1 6 6 O 1.42909 * 109.46978 * 54.99586 * 5 3 2 7 7 N 1.46498 * 109.47090 * 295.00116 * 3 2 1 8 8 C 1.34774 * 120.00348 * 85.00196 * 7 3 2 9 9 O 1.21549 * 119.99904 * 359.97438 * 8 7 3 10 10 C 1.47867 * 120.00079 * 180.02562 * 8 7 3 11 11 C 1.39669 * 120.09925 * 0.02562 * 10 8 7 12 12 C 1.38043 * 120.03800 * 179.97438 * 11 10 8 13 13 C 1.38176 * 120.24168 * 359.75416 * 12 11 10 14 14 C 1.39179 * 120.20357 * 0.50266 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.76778 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31631 * 119.99738 * 180.02562 * 18 16 15 20 20 Si 1.86791 * 120.00147 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46962 * 89.99772 * 20 18 16 22 22 H 1.48502 * 109.47274 * 210.00042 * 20 18 16 23 23 H 1.48499 * 109.47299 * 330.00031 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.49916 * 14 13 12 25 25 H 1.09003 * 109.47154 * 300.00043 * 1 2 3 26 26 H 1.09003 * 109.47120 * 60.00059 * 1 2 3 27 27 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47127 * 239.99538 * 2 1 3 29 29 H 1.08998 * 109.46726 * 119.99766 * 2 1 3 30 30 H 1.08995 * 109.47364 * 174.99481 * 5 3 2 31 31 H 1.09001 * 109.47005 * 295.00147 * 5 3 2 32 32 H 0.96699 * 113.99932 * 180.02562 * 6 5 3 33 33 H 0.97008 * 119.99747 * 264.99997 * 7 3 2 34 34 H 1.08002 * 119.98588 * 359.96545 * 11 10 8 35 35 H 1.08000 * 119.87868 * 180.02562 * 12 11 10 36 36 H 1.08005 * 119.89464 * 180.25271 * 13 12 11 37 37 H 0.96995 * 120.00040 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.12436 * 180.27334 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 4.1294 0.6402 -0.9121 7 7 1.6525 2.0974 -1.2518 8 6 0.4352 2.6644 -1.3670 9 8 -0.3412 2.6319 -0.4324 10 6 0.0439 3.3250 -2.6307 11 6 0.9339 3.3622 -3.7064 12 6 0.5670 3.9787 -4.8858 13 6 -0.6819 4.5568 -5.0097 14 6 -1.5747 4.5303 -3.9423 15 16 -3.1637 5.2742 -4.1034 16 6 -2.8281 6.8637 -3.4214 17 1 -1.8199 7.1279 -3.1381 18 6 -3.8588 7.7761 -3.2484 19 7 -3.6079 8.9638 -2.7393 20 14 -5.6026 7.3191 -3.7378 21 1 -6.2939 6.6950 -2.5811 22 1 -6.3368 8.5414 -4.1526 23 1 -5.5635 6.3575 -4.8687 24 6 -1.2143 3.9122 -2.7520 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9356 2.4654 0.0366 31 1 3.8499 1.0377 1.0961 32 1 5.0952 0.5955 -0.8936 33 1 2.2720 2.1231 -1.9978 34 1 1.9097 2.9084 -3.6156 35 1 1.2570 4.0056 -5.7161 36 1 -0.9646 5.0341 -5.9363 37 1 -4.3286 9.6015 -2.6180 38 1 -1.9066 3.8862 -1.9235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188220951.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:58 Heat of formation + Delta-G solvation = -96.931205 kcal Electronic energy + Delta-G solvation = -20939.838730 eV Core-core repulsion = 17678.943242 eV Total energy + Delta-G solvation = -3260.895488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43056 -39.49390 -38.19457 -35.94001 -34.72709 -33.78449 -32.02642 -31.80688 -29.59163 -27.93024 -25.18712 -24.35446 -23.72891 -21.98722 -21.49540 -20.07632 -18.94965 -18.43450 -17.38885 -17.15899 -16.99191 -16.63162 -16.49155 -15.86424 -15.31223 -15.07428 -15.06350 -14.93986 -14.71490 -14.36163 -13.85010 -13.62066 -13.47274 -13.22723 -13.10060 -13.06777 -12.70579 -12.43981 -12.29337 -11.93572 -11.85865 -11.81747 -11.23423 -11.13700 -10.94074 -10.83308 -10.16340 -9.91141 -9.75216 -9.15427 -8.54864 -6.29085 -0.20644 0.20127 1.05507 1.30646 1.43275 1.64739 1.80226 2.09900 2.21008 2.59819 2.83318 2.96274 3.37281 3.65725 3.80036 3.90893 3.98723 4.05290 4.23846 4.31102 4.43658 4.51414 4.52956 4.61176 4.68668 4.75502 4.89235 4.98739 5.02500 5.17273 5.21739 5.29428 5.41589 5.43946 5.52398 5.67860 5.82197 6.08981 6.50956 6.87561 6.95148 7.18736 8.58855 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003569 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.437798 B = 7843.350835 C = 8213.064918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.137 3.863 4 H 0.083 0.917 5 C 0.078 3.922 6 O -0.582 6.582 7 N -0.701 5.701 8 C 0.560 3.440 9 O -0.570 6.570 10 C -0.159 4.159 11 C -0.061 4.061 12 C -0.122 4.122 13 C -0.060 4.060 14 C -0.120 4.120 15 S -0.115 6.115 16 C -0.525 4.525 17 H 0.045 0.955 18 C 0.042 3.958 19 N -0.919 5.919 20 Si 0.922 3.078 21 H -0.263 1.263 22 H -0.256 1.256 23 H -0.227 1.227 24 C -0.043 4.043 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.401 0.599 33 H 0.415 0.585 34 H 0.170 0.830 35 H 0.177 0.823 36 H 0.140 0.860 37 H 0.278 0.722 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.310 -18.282 0.497 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.033 3.967 4 H 0.101 0.899 5 C -0.001 4.001 6 O -0.391 6.391 7 N -0.354 5.354 8 C 0.348 3.652 9 O -0.450 6.450 10 C -0.164 4.164 11 C -0.080 4.080 12 C -0.141 4.141 13 C -0.080 4.080 14 C -0.231 4.231 15 S 0.119 5.881 16 C -0.672 4.672 17 H 0.064 0.936 18 C -0.164 4.164 19 N -0.557 5.557 20 Si 0.742 3.258 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.150 1.150 24 C -0.064 4.064 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.253 0.747 34 H 0.187 0.813 35 H 0.194 0.806 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.079 -18.605 0.652 24.599 hybrid contribution 0.791 1.247 0.697 1.632 sum 16.870 -17.358 1.349 24.243 Atomic orbital electron populations 1.21800 0.96985 1.00479 1.01109 1.21777 0.94674 0.95720 1.03532 1.21343 0.94816 0.93784 0.86785 0.89897 1.22355 0.90243 0.95408 0.92052 1.86431 1.27590 1.72123 1.52993 1.45743 1.15378 1.56529 1.17732 1.18297 0.82257 0.77730 0.86867 1.90764 1.52515 1.60547 1.41197 1.20029 0.95826 1.04671 0.95857 1.21740 0.99038 0.95967 0.91244 1.21559 0.95767 0.97640 0.99132 1.22080 0.93109 0.95120 0.97735 1.22078 1.00417 1.03376 0.97191 1.82605 1.11463 1.12667 1.81384 1.22379 0.97558 0.98712 1.48516 0.93638 1.25726 1.03506 0.93907 0.93221 1.70032 1.35279 1.07019 1.43364 0.85772 0.78732 0.80070 0.81183 1.18722 1.18043 1.14997 1.21635 0.95635 0.93083 0.96090 0.93940 0.94982 0.92569 0.90876 0.89445 0.92011 0.89921 0.74830 0.74713 0.81258 0.80583 0.84168 0.91237 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 8.51 71.98 0.61 -3.10 16 2 C -0.12 -2.22 5.33 30.59 0.16 -2.06 16 3 C 0.14 2.55 2.66 44.99 0.12 2.67 16 4 H 0.08 1.87 7.58 -2.38 -0.02 1.85 16 5 C 0.08 0.80 6.79 71.98 0.49 1.29 16 6 O -0.58 -5.34 12.61 -148.98 -1.88 -7.22 16 7 N -0.70 -15.20 4.96 -445.40 -2.21 -17.41 16 8 C 0.56 17.79 6.34 86.79 0.55 18.34 16 9 O -0.57 -22.61 13.48 -3.87 -0.05 -22.66 16 10 C -0.16 -5.27 5.87 -20.11 -0.12 -5.39 16 11 C -0.06 -1.47 9.54 22.57 0.22 -1.25 16 12 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 13 C -0.06 -2.04 9.79 22.48 0.22 -1.82 16 14 C -0.12 -5.20 5.45 22.65 0.12 -5.07 16 15 S -0.12 -5.83 19.38 -56.49 -1.09 -6.93 16 16 C -0.52 -31.96 10.01 67.94 0.68 -31.28 16 17 H 0.05 3.07 8.02 -2.91 -0.02 3.04 16 18 C 0.04 2.49 5.50 84.84 0.47 2.95 16 19 N -0.92 -57.60 13.97 21.64 0.30 -57.30 16 20 Si 0.92 44.57 27.74 68.60 1.90 46.47 16 21 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.23 -10.41 6.74 99.48 0.67 -9.74 16 24 C -0.04 -1.81 9.34 22.70 0.21 -1.59 16 25 H 0.04 1.20 7.84 -2.39 -0.02 1.18 16 26 H 0.03 0.98 5.64 -2.39 -0.01 0.96 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.37 7.73 -2.39 -0.02 1.35 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.40 0.13 9.12 -74.06 -0.68 -0.55 16 33 H 0.41 6.69 6.41 -92.70 -0.59 6.10 16 34 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 35 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 38 H 0.11 5.11 7.65 -2.91 -0.02 5.09 16 Total: -1.00 -79.98 331.61 0.71 -79.27 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.21 Total: 14.83 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 3.96 Total: -29.06 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.91 Total: -74.71 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.93 Total: -29.88 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -5.83 SS G_CDS: -1.09 Total: -6.93 kcal Total: -79.98 0.71 -79.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188220951.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.660 kcal (2) G-P(sol) polarization free energy of solvation -79.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds