Wall clock time and date at job start Tue Mar 31 2020 07:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50698 * 109.47367 * 240.00227 * 2 1 3 5 5 H 1.08005 * 120.00035 * 240.00292 * 4 2 1 6 6 C 1.37881 * 120.00271 * 59.99516 * 4 2 1 7 7 N 1.31506 * 120.00178 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99607 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.46858 * 269.99454 * 8 6 4 10 10 H 1.48497 * 109.47800 * 29.99417 * 8 6 4 11 11 H 1.48496 * 109.47300 * 150.00044 * 8 6 4 12 12 N 1.46497 * 109.47244 * 119.99974 * 2 1 3 13 13 C 1.46500 * 120.00188 * 59.99945 * 12 2 1 14 14 C 1.34782 * 120.00264 * 240.00036 * 12 2 1 15 15 O 1.21582 * 119.99791 * 355.48961 * 14 12 2 16 16 C 1.47616 * 120.00099 * 175.48442 * 14 12 2 17 17 C 1.39557 * 120.49865 * 221.04566 * 16 14 12 18 18 N 1.31643 * 120.62520 * 180.02562 * 17 16 14 19 19 C 1.32434 * 121.79678 * 0.02562 * 18 17 16 20 20 O 1.35498 * 119.52432 * 180.02562 * 19 18 17 21 21 C 1.39124 * 120.95025 * 359.97438 * 19 18 17 22 22 N 1.48022 * 120.36418 * 180.02562 * 21 19 18 23 23 O 1.21801 * 119.99893 * 179.97438 * 22 21 19 24 24 O 1.21802 * 120.00211 * 359.97438 * 22 21 19 25 25 C 1.37993 * 119.26794 * 359.76683 * 21 19 18 26 26 H 1.08996 * 109.46614 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46702 * 300.00162 * 1 2 3 28 28 H 1.09005 * 109.46706 * 59.99728 * 1 2 3 29 29 H 0.96999 * 120.00430 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46948 * 95.17401 * 13 12 2 31 31 H 1.08999 * 109.47266 * 215.17822 * 13 12 2 32 32 H 1.09000 * 109.46778 * 335.17431 * 13 12 2 33 33 H 1.08001 * 119.69346 * 0.02639 * 17 16 14 34 34 H 0.96701 * 114.00534 * 89.99227 * 20 19 18 35 35 H 1.07998 * 120.82269 * 180.27672 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2798 -2.6541 9 1 -0.8021 0.8742 -2.6994 10 1 0.8488 2.1773 -1.4923 11 1 0.9770 1.9953 -3.9070 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0834 15 8 3.1547 1.1018 1.8514 16 6 3.2029 -0.6992 3.3367 17 6 3.2102 0.0052 4.5414 18 7 3.5756 -0.5839 5.6605 19 6 3.9478 -1.8545 5.6910 20 8 4.3146 -2.4148 6.8689 21 6 3.9667 -2.6225 4.5311 22 7 4.3846 -4.0417 4.5801 23 8 4.3982 -4.7081 3.5606 24 8 4.7147 -4.5431 5.6399 25 6 3.5865 -2.0481 3.3354 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9033 -0.5280 -4.4375 30 1 2.4610 -2.7356 1.0527 31 1 1.5338 -2.2630 2.4967 32 1 0.7353 -2.3243 0.9071 33 1 2.9133 1.0435 4.5559 34 1 3.5840 -2.8192 7.3566 35 1 3.5875 -2.6223 2.4206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188412757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:01 Heat of formation + Delta-G solvation = -13.167465 kcal Electronic energy + Delta-G solvation = -23862.588690 eV Core-core repulsion = 20059.032256 eV Total energy + Delta-G solvation = -3803.556434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55050 -41.14779 -39.49976 -37.71733 -36.62669 -35.95033 -33.99649 -32.87952 -31.72225 -30.21371 -27.17560 -26.78364 -25.37199 -24.66676 -23.86636 -21.86443 -20.00557 -19.59665 -19.04458 -18.56243 -17.84720 -17.36902 -17.22415 -16.66609 -16.32590 -15.87430 -15.33267 -14.94462 -14.19232 -13.95527 -13.70814 -13.32289 -13.09182 -12.67605 -12.53402 -12.40053 -12.03078 -11.94223 -11.72440 -11.66979 -11.36924 -11.29095 -10.91302 -10.85436 -10.50936 -10.30002 -9.93990 -9.74277 -9.63558 -9.44608 -8.77537 -8.11797 -6.27429 -4.30438 -0.63883 0.04902 0.93539 1.03218 2.40752 2.69368 3.05408 3.12675 3.20342 3.27494 3.27860 3.73628 3.89332 4.05101 4.22244 4.40471 4.55827 4.78619 5.04182 5.17368 5.24997 5.45126 5.62624 5.91849 6.02911 6.06040 6.10877 6.24660 6.62124 6.65733 6.80855 6.95176 6.98860 7.41444 7.42406 7.77597 8.20934 8.39569 8.72485 9.31304 10.84915 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004253 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.873116 B = 6582.430135 C = 7297.636733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.230 3.770 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.882 3.118 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.292 1.292 12 N -0.572 5.572 13 C 0.075 3.925 14 C 0.554 3.446 15 O -0.529 6.529 16 C -0.175 4.175 17 C 0.221 3.779 18 N -0.490 5.490 19 C 0.400 3.600 20 O -0.455 6.455 21 C -0.126 4.126 22 N 0.036 4.964 23 O -0.157 6.157 24 O -0.136 6.136 25 C 0.027 3.973 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.268 0.732 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.192 0.808 34 H 0.417 0.583 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -2.879 17.506 17.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.129 3.871 3 H 0.085 0.915 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.219 1.219 12 N -0.301 5.301 13 C -0.069 4.069 14 C 0.338 3.662 15 O -0.407 6.407 16 C -0.181 4.181 17 C 0.064 3.936 18 N -0.210 5.210 19 C 0.218 3.782 20 O -0.264 6.264 21 C -0.213 4.213 22 N 0.557 4.443 23 O -0.371 6.371 24 O -0.356 6.356 25 C 0.001 3.999 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.209 0.791 34 H 0.279 0.721 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.499 -1.015 17.758 17.850 hybrid contribution -0.848 -0.394 -0.867 1.276 sum -2.348 -1.409 16.891 17.111 Atomic orbital electron populations 1.22493 0.98647 1.01357 0.99632 1.19444 0.90216 0.95239 0.82225 0.91539 1.21083 1.33363 1.14552 0.88278 0.90158 1.24852 0.95555 0.96545 0.95565 1.69856 1.44669 1.39983 0.98080 0.86931 0.80439 0.83716 0.77708 1.20279 1.18804 1.21939 1.47896 1.47900 1.11840 1.22486 1.21974 1.02937 0.82539 0.99408 1.17598 0.80062 0.86104 0.82437 1.90823 1.55075 1.17931 1.76828 1.21354 1.05543 0.93447 0.97799 1.23282 0.85646 1.00203 0.84479 1.67783 1.14088 1.08695 1.30411 1.19059 0.86633 0.87149 0.85395 1.84765 1.36915 1.74236 1.30530 1.22386 1.16575 0.84484 0.97902 1.43201 0.98399 1.01950 1.00770 1.94609 1.57784 1.60302 1.24386 1.94564 1.49159 1.73356 1.18527 1.22130 0.85909 0.93961 0.97874 0.92323 0.94649 0.92721 0.92211 0.91842 0.93095 0.89335 0.79077 0.72103 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.66 37.16 0.32 -2.82 16 2 C 0.23 5.01 2.22 -69.08 -0.15 4.86 16 3 H 0.07 1.61 5.96 -51.93 -0.31 1.30 16 4 C -0.53 -13.78 8.95 -34.44 -0.31 -14.08 16 5 H 0.08 2.23 7.89 -52.48 -0.41 1.82 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 8 Si 0.88 20.51 24.37 -169.99 -4.14 16.37 16 9 H -0.28 -6.12 6.87 56.52 0.39 -5.73 16 10 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.57 -10.28 2.75 -176.46 -0.49 -10.76 16 13 C 0.07 1.05 8.13 59.85 0.49 1.54 16 14 C 0.55 9.50 7.34 -12.43 -0.09 9.41 16 15 O -0.53 -10.91 16.29 5.29 0.09 -10.82 16 16 C -0.18 -2.26 5.18 -104.82 -0.54 -2.80 16 17 C 0.22 2.44 10.81 -17.14 -0.19 2.26 16 18 N -0.49 -5.43 10.37 -12.97 -0.13 -5.57 16 19 C 0.40 4.35 7.73 -16.96 -0.13 4.22 16 20 O -0.45 -4.19 11.57 -40.27 -0.47 -4.66 16 21 C -0.13 -1.49 6.88 -79.71 -0.55 -2.04 16 22 N 0.04 0.47 4.45 34.08 0.15 0.62 16 23 O -0.16 -2.23 18.51 -29.46 -0.55 -2.78 16 24 O -0.14 -1.77 17.26 -36.48 -0.63 -2.40 16 25 C 0.03 0.33 7.22 -38.92 -0.28 0.05 16 26 H 0.06 1.04 6.66 -51.93 -0.35 0.69 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 29 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.06 0.88 6.87 -51.93 -0.36 0.53 16 31 H 0.05 0.56 5.97 -51.93 -0.31 0.25 16 32 H 0.09 1.25 6.44 -51.93 -0.33 0.92 16 33 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.42 1.72 9.06 45.56 0.41 2.13 16 35 H 0.18 2.17 5.17 -52.49 -0.27 1.90 16 LS Contribution 300.42 15.07 4.53 4.53 Total: -1.00 -32.11 300.42 -4.52 -36.63 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -2.13 Total: 1.10 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.53 Total: 2.61 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.31 Total: -40.57 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.55 Total: -20.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.14 Total: 16.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.11 -4.52 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188412757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.463 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds