Wall clock time and date at job start Tue Mar 31 2020 07:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46892 * 2 1 4 4 C 1.50698 * 109.47367 * 240.00227 * 2 1 3 5 5 H 1.08005 * 120.00035 * 240.00292 * 4 2 1 6 6 C 1.37881 * 120.00271 * 59.99516 * 4 2 1 7 7 N 1.31506 * 120.00178 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99607 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.46858 * 269.99454 * 8 6 4 10 10 H 1.48497 * 109.47800 * 29.99417 * 8 6 4 11 11 H 1.48496 * 109.47300 * 150.00044 * 8 6 4 12 12 N 1.46497 * 109.47244 * 119.99974 * 2 1 3 13 13 C 1.46500 * 120.00188 * 59.99945 * 12 2 1 14 14 C 1.34782 * 120.00264 * 240.00036 * 12 2 1 15 15 O 1.21582 * 119.99791 * 355.48961 * 14 12 2 16 16 C 1.47616 * 120.00099 * 175.48442 * 14 12 2 17 17 C 1.39557 * 120.49865 * 221.04566 * 16 14 12 18 18 N 1.31643 * 120.62520 * 180.02562 * 17 16 14 19 19 C 1.32434 * 121.79678 * 0.02562 * 18 17 16 20 20 O 1.35498 * 119.52432 * 180.02562 * 19 18 17 21 21 C 1.39124 * 120.95025 * 359.97438 * 19 18 17 22 22 N 1.48022 * 120.36418 * 180.02562 * 21 19 18 23 23 O 1.21801 * 119.99893 * 179.97438 * 22 21 19 24 24 O 1.21802 * 120.00211 * 359.97438 * 22 21 19 25 25 C 1.37993 * 119.26794 * 359.76683 * 21 19 18 26 26 H 1.08996 * 109.46614 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46702 * 300.00162 * 1 2 3 28 28 H 1.09005 * 109.46706 * 59.99728 * 1 2 3 29 29 H 0.96999 * 120.00430 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.46948 * 95.17401 * 13 12 2 31 31 H 1.08999 * 109.47266 * 215.17822 * 13 12 2 32 32 H 1.09000 * 109.46778 * 335.17431 * 13 12 2 33 33 H 1.08001 * 119.69346 * 0.02639 * 17 16 14 34 34 H 0.96701 * 114.00534 * 89.99227 * 20 19 18 35 35 H 1.07998 * 120.82269 * 180.27672 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2798 -2.6541 9 1 -0.8021 0.8742 -2.6994 10 1 0.8488 2.1773 -1.4923 11 1 0.9770 1.9953 -3.9070 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0834 15 8 3.1547 1.1018 1.8514 16 6 3.2029 -0.6992 3.3367 17 6 3.2102 0.0052 4.5414 18 7 3.5756 -0.5839 5.6605 19 6 3.9478 -1.8545 5.6910 20 8 4.3146 -2.4148 6.8689 21 6 3.9667 -2.6225 4.5311 22 7 4.3846 -4.0417 4.5801 23 8 4.3982 -4.7081 3.5606 24 8 4.7147 -4.5431 5.6399 25 6 3.5865 -2.0481 3.3354 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9033 -0.5280 -4.4375 30 1 2.4610 -2.7356 1.0527 31 1 1.5338 -2.2630 2.4967 32 1 0.7353 -2.3243 0.9071 33 1 2.9133 1.0435 4.5559 34 1 3.5840 -2.8192 7.3566 35 1 3.5875 -2.6223 2.4206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188412757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:00 Heat of formation + Delta-G solvation = -38.455684 kcal Electronic energy + Delta-G solvation = -23863.685269 eV Core-core repulsion = 20059.032256 eV Total energy + Delta-G solvation = -3804.653014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.53842 -42.17521 -40.74491 -38.62041 -37.64994 -37.44953 -35.25384 -34.41483 -33.04147 -31.63657 -28.28014 -27.90555 -27.19254 -25.82659 -24.86878 -23.22711 -21.26865 -20.46475 -20.08119 -19.76387 -18.97790 -18.80099 -18.38316 -17.81353 -17.64340 -17.27003 -16.74803 -16.18442 -15.44174 -15.12879 -15.02733 -14.72715 -14.38657 -14.11954 -13.96990 -13.63141 -13.32847 -13.23039 -13.07062 -12.76508 -12.73077 -12.59070 -12.34253 -12.06965 -11.86363 -11.62859 -11.49471 -11.36705 -10.96723 -10.80904 -10.74063 -9.61894 -8.35118 -6.41356 -1.58485 -0.91882 -0.05669 0.05950 1.28151 1.33050 1.37963 1.45534 1.74492 1.92960 2.01515 2.27796 2.79405 2.85400 3.00728 3.10135 3.48465 3.54260 3.86525 4.12709 4.23260 4.40166 4.46564 4.54639 4.59811 4.64103 4.82654 5.02660 5.06461 5.25845 5.39924 5.57893 5.89822 6.12149 6.26901 6.37279 6.45708 6.62596 6.95087 7.25444 8.80704 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004253 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.873116 B = 6582.430135 C = 7297.636733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.232 3.768 3 H 0.043 0.957 4 C -0.531 4.531 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.941 3.059 9 H -0.254 1.254 10 H -0.255 1.255 11 H -0.300 1.300 12 N -0.580 5.580 13 C 0.072 3.928 14 C 0.556 3.444 15 O -0.569 6.569 16 C -0.184 4.184 17 C 0.243 3.757 18 N -0.491 5.491 19 C 0.421 3.579 20 O -0.458 6.458 21 C -0.132 4.132 22 N 0.038 4.962 23 O -0.195 6.195 24 O -0.120 6.120 25 C 0.037 3.963 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.268 0.732 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.212 0.788 34 H 0.440 0.560 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -2.396 20.276 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.060 0.940 4 C -0.569 4.569 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.578 5.578 8 Si 0.768 3.232 9 H -0.179 1.179 10 H -0.179 1.179 11 H -0.227 1.227 12 N -0.309 5.309 13 C -0.070 4.070 14 C 0.342 3.658 15 O -0.450 6.450 16 C -0.191 4.191 17 C 0.085 3.915 18 N -0.211 5.211 19 C 0.238 3.762 20 O -0.271 6.271 21 C -0.220 4.220 22 N 0.557 4.443 23 O -0.400 6.400 24 O -0.346 6.346 25 C 0.011 3.989 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.308 0.692 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.720 -0.600 20.512 20.701 hybrid contribution -0.356 -0.616 -1.527 1.685 sum -3.076 -1.216 18.985 19.271 Atomic orbital electron populations 1.22351 0.96039 1.02597 1.00465 1.19111 0.92136 0.93695 0.82161 0.93959 1.21338 1.32073 1.13312 0.90175 0.93617 1.25660 0.97104 0.99517 0.95276 1.70000 1.46963 1.42149 0.98693 0.85984 0.79787 0.80102 0.77356 1.17915 1.17893 1.22731 1.47874 1.48223 1.13188 1.21626 1.22161 1.02721 0.80325 1.01799 1.18029 0.78853 0.85620 0.83249 1.90797 1.56418 1.19846 1.77918 1.20846 1.08066 0.93684 0.96463 1.23555 0.83700 1.00679 0.83556 1.67962 1.14646 1.08563 1.29884 1.19132 0.84453 0.86920 0.85648 1.84719 1.38273 1.74264 1.29888 1.22322 1.17683 0.83784 0.98164 1.43328 0.98107 1.02354 1.00536 1.94629 1.59684 1.61013 1.24674 1.94539 1.48049 1.73621 1.18370 1.22025 0.85276 0.93566 0.98041 0.90985 0.91776 0.93749 0.92254 0.92254 0.89482 0.89296 0.77122 0.69239 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 8.66 71.98 0.62 -5.08 16 2 C 0.23 10.03 2.22 44.25 0.10 10.13 16 3 H 0.04 2.05 5.96 -2.38 -0.01 2.04 16 4 C -0.53 -27.99 8.95 25.60 0.23 -27.76 16 5 H 0.05 2.66 7.89 -2.91 -0.02 2.63 16 6 C 0.02 1.29 5.45 84.66 0.46 1.75 16 7 N -0.94 -55.89 13.96 21.45 0.30 -55.59 16 8 Si 0.94 42.37 24.37 68.60 1.67 44.05 16 9 H -0.25 -10.45 6.87 99.48 0.68 -9.77 16 10 H -0.25 -11.01 6.53 99.48 0.65 -10.36 16 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 12 N -0.58 -20.49 2.75 -830.47 -2.29 -22.78 16 13 C 0.07 1.95 8.13 127.77 1.04 2.99 16 14 C 0.56 18.63 7.34 86.72 0.64 19.27 16 15 O -0.57 -23.38 16.29 -3.98 -0.06 -23.45 16 16 C -0.18 -4.42 5.18 -20.00 -0.10 -4.52 16 17 C 0.24 4.65 10.81 85.04 0.92 5.57 16 18 N -0.49 -9.20 10.37 -307.81 -3.19 -12.40 16 19 C 0.42 7.79 7.73 84.81 0.66 8.45 16 20 O -0.46 -6.77 11.57 -66.87 -0.77 -7.54 16 21 C -0.13 -2.81 6.88 36.53 0.25 -2.56 16 22 N 0.04 0.93 4.45 -46.09 -0.21 0.73 16 23 O -0.20 -5.46 18.51 18.89 0.35 -5.11 16 24 O -0.12 -2.83 17.26 25.59 0.44 -2.38 16 25 C 0.04 0.83 7.22 22.70 0.16 1.00 16 26 H 0.07 2.40 6.66 -2.39 -0.02 2.38 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.04 1.71 3.27 -2.38 -0.01 1.70 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.06 1.66 6.87 -2.39 -0.02 1.64 16 31 H 0.09 1.72 5.97 -2.39 -0.01 1.70 16 32 H 0.09 2.40 6.44 -2.39 -0.02 2.39 16 33 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.44 1.87 9.06 -74.06 -0.67 1.20 16 35 H 0.18 4.15 5.17 -2.91 -0.02 4.14 16 Total: -1.00 -70.83 300.42 1.65 -69.18 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.43 Total: 6.05 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.97 Total: 9.24 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -5.38 Total: -90.04 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.05 Total: -38.48 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.67 Total: 44.05 kcal Total: -70.83 1.65 -69.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188412757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.722 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds