Wall clock time and date at job start Tue Mar 31 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21584 * 119.99988 * 359.97438 * 14 13 3 16 16 C 1.47620 * 120.00229 * 179.97438 * 14 13 3 17 17 C 1.39560 * 120.49701 * 0.02562 * 16 14 13 18 18 N 1.31642 * 120.62402 * 180.02562 * 17 16 14 19 19 C 1.32427 * 121.79975 * 359.97438 * 18 17 16 20 20 O 1.35503 * 119.52800 * 179.97438 * 19 18 17 21 21 C 1.39125 * 120.95259 * 359.97438 * 19 18 17 22 22 N 1.48023 * 120.37258 * 180.02562 * 21 19 18 23 23 O 1.21794 * 120.00238 * 179.97438 * 22 21 19 24 24 O 1.21800 * 119.99517 * 359.97438 * 22 21 19 25 25 C 1.38004 * 119.26273 * 359.76113 * 21 19 18 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 32 32 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 33 33 H 1.08005 * 119.68892 * 0.02562 * 17 16 14 34 34 H 0.96700 * 113.99676 * 89.99331 * 20 19 18 35 35 H 1.07999 * 120.82293 * 180.27933 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3364 2.6299 -0.4651 16 6 0.0759 3.3137 -2.6594 17 6 0.9716 3.3523 -3.7288 18 7 0.6396 3.9363 -4.8609 19 6 -0.5441 4.5049 -5.0319 20 8 -0.8372 5.0937 -6.2166 21 6 -1.4910 4.5065 -4.0127 22 7 -2.8104 5.1454 -4.2180 23 8 -3.6346 5.1425 -3.3213 24 8 -3.0718 5.6740 -5.2837 25 6 -1.1887 3.9010 -2.8100 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4383 32 1 2.2954 2.1150 -1.9977 33 1 1.9465 2.8987 -3.6267 34 1 -1.2464 4.4994 -6.8605 35 1 -1.9066 3.8836 -2.0034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194004147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:34 Heat of formation + Delta-G solvation = -40.247749 kcal Electronic energy + Delta-G solvation = -23489.305005 eV Core-core repulsion = 19684.574282 eV Total energy + Delta-G solvation = -3804.730724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.59943 -41.16030 -39.48565 -37.78651 -36.69077 -35.60604 -33.68804 -32.92986 -32.14943 -30.92804 -27.57356 -27.04686 -24.79107 -23.83102 -22.55926 -21.43341 -20.02711 -19.91170 -19.28635 -19.07196 -18.10385 -17.89819 -17.40305 -16.96945 -16.32988 -15.64228 -15.19113 -14.70968 -14.11250 -13.96709 -13.64827 -13.52761 -12.77178 -12.68212 -12.61113 -12.49149 -11.91949 -11.80233 -11.73212 -11.35997 -11.04720 -10.99744 -10.88085 -10.58934 -10.54340 -10.05040 -9.97984 -9.87340 -9.69043 -9.36101 -8.44669 -8.40613 -6.76421 -4.37273 -0.72036 -0.02012 0.87440 0.95637 2.31532 2.66081 3.22694 3.29988 3.33151 3.36850 3.51633 3.60843 3.97692 4.10406 4.23590 4.31651 4.51554 4.93239 5.01309 5.24798 5.34572 5.88903 5.92642 5.99338 6.08766 6.48491 6.59957 6.62257 6.70190 6.82580 6.87560 7.06511 7.17393 7.36027 7.40946 8.05611 8.11041 8.37569 8.63724 9.28111 10.62025 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.003783 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.664409 B = 7400.551499 C = 7950.776849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.251 3.749 4 H 0.045 0.955 5 C -0.636 4.636 6 H 0.064 0.936 7 C 0.052 3.948 8 N -0.881 5.881 9 Si 1.027 2.973 10 H -0.281 1.281 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.686 5.686 14 C 0.549 3.451 15 O -0.530 6.530 16 C -0.182 4.182 17 C 0.205 3.795 18 N -0.489 5.489 19 C 0.403 3.597 20 O -0.455 6.455 21 C -0.127 4.127 22 N 0.036 4.964 23 O -0.159 6.159 24 O -0.135 6.135 25 C 0.055 3.945 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.273 0.727 32 H 0.392 0.608 33 H 0.188 0.812 34 H 0.418 0.582 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 3.800 -12.292 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.148 3.852 4 H 0.063 0.937 5 C -0.672 4.672 6 H 0.082 0.918 7 C -0.157 4.157 8 N -0.511 5.511 9 Si 0.854 3.146 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.334 5.334 14 C 0.332 3.668 15 O -0.409 6.409 16 C -0.188 4.188 17 C 0.047 3.953 18 N -0.208 5.208 19 C 0.221 3.779 20 O -0.264 6.264 21 C -0.215 4.215 22 N 0.557 4.443 23 O -0.372 6.372 24 O -0.355 6.355 25 C 0.029 3.971 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.227 0.773 33 H 0.205 0.795 34 H 0.280 0.720 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.596 3.674 -10.331 14.571 hybrid contribution -0.764 0.140 -1.772 1.934 sum -10.360 3.814 -12.103 16.382 Atomic orbital electron populations 1.21914 0.97373 0.99198 1.01849 1.22254 0.93675 0.99409 1.01800 1.19164 0.96198 0.88625 0.81205 0.93684 1.21926 0.89316 1.50850 1.05155 0.91765 1.25599 0.96563 0.91508 1.02060 1.70878 1.13779 1.35783 1.30699 0.84249 0.76110 0.77746 0.76495 1.20678 1.20555 1.19832 1.46281 1.13510 1.54888 1.18727 1.17587 0.83652 0.79793 0.85797 1.90819 1.50534 1.59541 1.39956 1.21446 0.94817 1.04274 0.98267 1.23463 0.99018 0.87750 0.85072 1.67718 1.16361 1.10958 1.25769 1.19057 0.86372 0.85723 0.86789 1.84762 1.82073 1.37187 1.22403 1.22402 0.87240 1.11589 1.00241 1.43185 1.01564 0.98958 1.00569 1.94597 1.42219 1.63803 1.36598 1.94566 1.83410 1.43698 1.13831 1.21630 0.96077 0.84890 0.94517 0.93582 0.94800 0.92792 0.92946 0.91452 0.91708 0.77327 0.79497 0.71980 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.53 37.16 0.32 -2.34 16 2 C -0.13 -2.67 5.37 -26.73 -0.14 -2.81 16 3 C 0.25 5.34 1.84 -69.08 -0.13 5.21 16 4 H 0.05 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.64 -15.61 8.92 -34.44 -0.31 -15.92 16 6 H 0.06 1.64 7.96 -52.48 -0.42 1.22 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.88 -24.52 13.70 55.43 0.76 -23.76 16 9 Si 1.03 23.39 26.56 -169.99 -4.51 18.88 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.84 6.34 56.52 0.36 -5.48 16 13 N -0.69 -11.64 4.98 -55.95 -0.28 -11.92 16 14 C 0.55 8.78 6.37 -12.43 -0.08 8.70 16 15 O -0.53 -10.09 13.55 5.29 0.07 -10.02 16 16 C -0.18 -2.23 5.89 -104.82 -0.62 -2.85 16 17 C 0.20 2.11 10.71 -17.14 -0.18 1.92 16 18 N -0.49 -5.28 10.37 -12.96 -0.13 -5.41 16 19 C 0.40 4.31 7.73 -16.97 -0.13 4.18 16 20 O -0.45 -4.12 11.57 -40.28 -0.47 -4.59 16 21 C -0.13 -1.48 6.88 -79.70 -0.55 -2.03 16 22 N 0.04 0.47 4.45 34.08 0.15 0.62 16 23 O -0.16 -2.21 18.51 -29.46 -0.55 -2.75 16 24 O -0.13 -1.72 17.26 -36.48 -0.63 -2.35 16 25 C 0.06 0.66 9.20 -38.92 -0.36 0.30 16 26 H 0.05 0.81 5.63 -51.93 -0.29 0.52 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.45 5.77 -51.93 -0.30 1.15 16 31 H 0.27 7.48 8.73 -40.82 -0.36 7.12 16 32 H 0.39 5.56 6.58 -40.82 -0.27 5.29 16 33 H 0.19 1.48 6.41 -52.48 -0.34 1.15 16 34 H 0.42 1.69 9.06 45.56 0.41 2.11 16 35 H 0.18 2.18 7.36 -52.49 -0.39 1.79 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -30.42 305.87 -5.60 -36.02 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -2.36 Total: 5.04 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.27 Total: -4.36 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.50 Total: -40.47 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.57 Total: -19.71 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.51 Total: 18.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.42 -5.60 -36.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194004147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.230 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds