Wall clock time and date at job start Tue Mar 31 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21584 * 119.99988 * 359.97438 * 14 13 3 16 16 C 1.47620 * 120.00229 * 179.97438 * 14 13 3 17 17 C 1.39560 * 120.49701 * 0.02562 * 16 14 13 18 18 N 1.31642 * 120.62402 * 180.02562 * 17 16 14 19 19 C 1.32427 * 121.79975 * 359.97438 * 18 17 16 20 20 O 1.35503 * 119.52800 * 179.97438 * 19 18 17 21 21 C 1.39125 * 120.95259 * 359.97438 * 19 18 17 22 22 N 1.48023 * 120.37258 * 180.02562 * 21 19 18 23 23 O 1.21794 * 120.00238 * 179.97438 * 22 21 19 24 24 O 1.21800 * 119.99517 * 359.97438 * 22 21 19 25 25 C 1.38004 * 119.26273 * 359.76113 * 21 19 18 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 32 32 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 33 33 H 1.08005 * 119.68892 * 0.02562 * 17 16 14 34 34 H 0.96700 * 113.99676 * 89.99331 * 20 19 18 35 35 H 1.07999 * 120.82293 * 180.27933 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3364 2.6299 -0.4651 16 6 0.0759 3.3137 -2.6594 17 6 0.9716 3.3523 -3.7288 18 7 0.6396 3.9363 -4.8609 19 6 -0.5441 4.5049 -5.0319 20 8 -0.8372 5.0937 -6.2166 21 6 -1.4910 4.5065 -4.0127 22 7 -2.8104 5.1454 -4.2180 23 8 -3.6346 5.1425 -3.3213 24 8 -3.0718 5.6740 -5.2837 25 6 -1.1887 3.9010 -2.8100 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4383 32 1 2.2954 2.1150 -1.9977 33 1 1.9465 2.8987 -3.6267 34 1 -1.2464 4.4994 -6.8605 35 1 -1.9066 3.8836 -2.0034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194004147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:34 Heat of formation + Delta-G solvation = -63.797162 kcal Electronic energy + Delta-G solvation = -23490.326184 eV Core-core repulsion = 19684.574282 eV Total energy + Delta-G solvation = -3805.751903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.56264 -42.14064 -40.72461 -38.66627 -37.67199 -37.16856 -34.73093 -34.49349 -33.66571 -32.09995 -29.20634 -28.04751 -25.89615 -24.76778 -24.25746 -22.69743 -21.53833 -20.91866 -20.35119 -20.04797 -19.63494 -18.86586 -18.57322 -18.06255 -17.30738 -17.07985 -16.51319 -15.84863 -15.47397 -15.20879 -14.87502 -14.59902 -14.48132 -14.37328 -14.01091 -13.57363 -13.38527 -12.80565 -12.76380 -12.64516 -12.51407 -12.38606 -12.29972 -11.96013 -11.78611 -11.64627 -11.47858 -11.23723 -10.98836 -10.81768 -10.39783 -9.94483 -8.80055 -6.39757 -1.63320 -0.96709 -0.08496 0.01050 1.34621 1.48894 1.51582 1.70342 1.81289 2.02101 2.19726 2.44004 2.71899 2.94919 3.02085 3.16648 3.35882 3.58339 3.99612 4.31312 4.31987 4.40176 4.47624 4.54319 4.85237 5.02425 5.11439 5.18006 5.26111 5.53237 5.54682 5.67702 5.85270 6.04929 6.22770 6.33826 6.54715 6.62756 7.14304 7.31539 8.58026 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.027589 B = 0.003783 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.664409 B = 7400.551499 C = 7950.776849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.255 3.745 4 H 0.027 0.973 5 C -0.627 4.627 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.056 2.944 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.253 1.253 13 N -0.687 5.687 14 C 0.555 3.445 15 O -0.562 6.562 16 C -0.190 4.190 17 C 0.227 3.773 18 N -0.492 5.492 19 C 0.422 3.578 20 O -0.458 6.458 21 C -0.134 4.134 22 N 0.038 4.962 23 O -0.194 6.194 24 O -0.120 6.120 25 C 0.063 3.937 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.213 0.787 34 H 0.440 0.560 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.508 4.012 -13.915 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.151 3.849 4 H 0.045 0.955 5 C -0.664 4.664 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.549 5.549 9 Si 0.879 3.121 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.178 1.178 13 N -0.336 5.336 14 C 0.341 3.659 15 O -0.442 6.442 16 C -0.196 4.196 17 C 0.069 3.931 18 N -0.212 5.212 19 C 0.240 3.760 20 O -0.271 6.271 21 C -0.222 4.222 22 N 0.557 4.443 23 O -0.399 6.399 24 O -0.346 6.346 25 C 0.036 3.964 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.243 0.757 33 H 0.229 0.771 34 H 0.308 0.692 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.522 3.879 -11.953 16.390 hybrid contribution -0.478 0.160 -1.479 1.562 sum -11.000 4.039 -13.432 17.824 Atomic orbital electron populations 1.21803 0.95648 1.00474 1.01460 1.22145 0.95125 0.98189 1.01404 1.18827 0.93825 0.89637 0.82658 0.95513 1.22123 0.91176 1.48916 1.04192 0.93225 1.26528 0.96640 0.91355 1.04795 1.70964 1.15071 1.38608 1.30237 0.83854 0.75983 0.78316 0.73902 1.21082 1.19954 1.17772 1.45991 1.14525 1.55201 1.17863 1.17870 0.82623 0.78854 0.86583 1.90808 1.51322 1.60585 1.41503 1.20949 0.95575 1.05873 0.97240 1.23781 0.99181 0.86159 0.83989 1.67890 1.16201 1.11503 1.25597 1.19131 0.85852 0.83991 0.87023 1.84714 1.82257 1.37927 1.22248 1.22351 0.86885 1.12440 1.00550 1.43312 1.01866 0.98791 1.00368 1.94611 1.43041 1.65312 1.36978 1.94541 1.83468 1.42936 1.13649 1.21567 0.95847 0.84382 0.94571 0.93094 0.92647 0.94071 0.92227 0.93012 0.92669 0.75684 0.77099 0.69216 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.53 71.98 0.61 -4.10 16 2 C -0.13 -5.05 5.37 30.60 0.16 -4.88 16 3 C 0.25 10.62 1.84 44.25 0.08 10.70 16 4 H 0.03 1.24 6.12 -2.39 -0.01 1.23 16 5 C -0.63 -30.67 8.92 25.60 0.23 -30.45 16 6 H 0.05 2.53 7.96 -2.91 -0.02 2.51 16 7 C 0.01 0.55 5.15 84.66 0.44 0.99 16 8 N -0.92 -51.73 13.70 21.45 0.29 -51.43 16 9 Si 1.06 47.11 26.56 68.60 1.82 48.93 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.25 -10.41 6.34 99.48 0.63 -9.78 16 13 N -0.69 -22.24 4.98 -449.20 -2.24 -24.48 16 14 C 0.56 16.95 6.37 86.72 0.55 17.50 16 15 O -0.56 -20.91 13.55 -3.98 -0.05 -20.97 16 16 C -0.19 -4.27 5.89 -19.99 -0.12 -4.39 16 17 C 0.23 3.98 10.71 85.04 0.91 4.89 16 18 N -0.49 -9.01 10.37 -307.80 -3.19 -12.20 16 19 C 0.42 7.78 7.73 84.82 0.66 8.43 16 20 O -0.46 -6.78 11.57 -66.94 -0.77 -7.55 16 21 C -0.13 -2.86 6.88 36.53 0.25 -2.61 16 22 N 0.04 0.92 4.45 -46.08 -0.21 0.71 16 23 O -0.19 -5.32 18.51 18.89 0.35 -4.97 16 24 O -0.12 -2.80 17.26 25.60 0.44 -2.36 16 25 C 0.06 1.41 9.20 22.70 0.21 1.62 16 26 H 0.05 1.69 5.63 -2.39 -0.01 1.68 16 27 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.04 1.51 7.89 -2.39 -0.02 1.50 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.16 5.77 -2.39 -0.01 2.15 16 31 H 0.26 14.81 8.73 -92.70 -0.81 14.00 16 32 H 0.41 10.69 6.58 -92.70 -0.61 10.08 16 33 H 0.21 2.60 6.41 -2.91 -0.02 2.58 16 34 H 0.44 1.98 9.06 -74.06 -0.67 1.31 16 35 H 0.18 4.14 7.36 -2.91 -0.02 4.12 16 Total: -1.00 -64.91 305.87 0.22 -64.69 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.21 Total: 11.92 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 3.99 Total: -2.29 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -5.34 Total: -87.40 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.04 Total: -35.85 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.82 Total: 48.93 kcal Total: -64.91 0.22 -64.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194004147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds