Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21580 * 120.00601 * 0.02562 * 14 13 3 16 16 C 1.47618 * 119.99802 * 179.97438 * 14 13 3 17 17 C 1.39571 * 120.49743 * 0.02562 * 16 14 13 18 18 N 1.31641 * 120.62614 * 180.02562 * 17 16 14 19 19 C 1.32441 * 121.79642 * 359.97438 * 18 17 16 20 20 O 1.35497 * 119.51852 * 180.02562 * 19 18 17 21 21 C 1.39125 * 120.95462 * 359.97399 * 19 18 17 22 22 N 1.48009 * 120.36778 * 180.02562 * 21 19 18 23 23 O 1.21812 * 119.99899 * 180.02562 * 22 21 19 24 24 O 1.21801 * 120.00583 * 0.02562 * 22 21 19 25 25 C 1.37998 * 119.25843 * 359.76942 * 21 19 18 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.07997 * 119.68511 * 0.02562 * 17 16 14 34 34 H 0.96701 * 114.00367 * 90.00171 * 20 19 18 35 35 H 1.08004 * 120.81642 * 180.26770 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3414 2.6319 0.4320 16 6 0.0445 3.3239 2.6284 17 6 0.9276 3.3669 3.7083 18 7 0.5816 3.9540 4.8346 19 6 -0.6045 4.5225 4.9895 20 8 -0.9122 5.1144 6.1689 21 6 -1.5386 4.5216 3.9585 22 7 -2.8602 5.1613 4.1456 23 8 -3.6732 5.1563 3.2385 24 8 -3.1349 5.6929 5.2065 25 6 -1.2172 3.9224 2.7577 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 1.9041 2.9143 3.6190 34 1 -0.6742 6.0506 6.2131 35 1 -1.9216 3.9108 1.9391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194004163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = -62.330347 kcal Electronic energy + Delta-G solvation = -23419.661141 eV Core-core repulsion = 19613.972844 eV Total energy + Delta-G solvation = -3805.688297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.54084 -42.09241 -40.63010 -38.62152 -37.65289 -37.05346 -34.66582 -34.40253 -33.31642 -31.98998 -29.03715 -28.01730 -25.98392 -24.77091 -24.70974 -22.56083 -21.47063 -20.82905 -20.21376 -20.02712 -19.06780 -18.84266 -18.32271 -17.74496 -17.20086 -17.07122 -16.41612 -16.21539 -15.50115 -15.17384 -14.77756 -14.64237 -14.45843 -13.85517 -13.50871 -13.35793 -13.17861 -12.87882 -12.78823 -12.73512 -12.70464 -12.37446 -12.16104 -12.06994 -11.92302 -11.60636 -11.45865 -11.05587 -10.92664 -10.76485 -10.53619 -9.76551 -8.15439 -6.32283 -1.60280 -0.93028 -0.05748 0.03372 1.40346 1.46662 1.49467 1.59300 1.84956 2.08931 2.26634 2.45494 2.76115 3.06734 3.15724 3.21849 3.41226 3.64376 4.05267 4.37147 4.49558 4.52949 4.56875 4.75251 5.04254 5.06477 5.26609 5.41214 5.46258 5.60363 5.77564 5.86819 5.89085 6.16201 6.25469 6.35400 6.73113 6.78585 7.25957 7.42909 8.89937 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.026826 B = 0.003618 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.524658 B = 7736.937016 C = 8402.735331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.007 0.993 5 C -0.546 4.546 6 H 0.079 0.921 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.257 1.257 11 H -0.283 1.283 12 H -0.288 1.288 13 N -0.688 5.688 14 C 0.552 3.448 15 O -0.569 6.569 16 C -0.189 4.189 17 C 0.229 3.771 18 N -0.490 5.490 19 C 0.422 3.578 20 O -0.457 6.457 21 C -0.135 4.135 22 N 0.038 4.962 23 O -0.201 6.201 24 O -0.116 6.116 25 C 0.059 3.941 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.407 0.593 33 H 0.218 0.782 34 H 0.440 0.560 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 7.524 14.964 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.215 1.215 13 N -0.337 5.337 14 C 0.337 3.663 15 O -0.450 6.450 16 C -0.195 4.195 17 C 0.071 3.929 18 N -0.209 5.209 19 C 0.240 3.760 20 O -0.271 6.271 21 C -0.223 4.223 22 N 0.556 4.444 23 O -0.404 6.404 24 O -0.343 6.343 25 C 0.033 3.967 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.244 0.756 33 H 0.235 0.765 34 H 0.308 0.692 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.732 6.615 14.822 16.459 hybrid contribution 0.121 0.421 -1.076 1.162 sum -2.611 7.036 13.745 15.661 Atomic orbital electron populations 1.21716 0.97143 0.99269 1.00304 1.21818 0.93567 0.99084 1.01739 1.18489 0.93940 0.89221 0.80841 0.97556 1.21599 0.91139 1.38873 1.06788 0.90285 1.25705 1.02913 0.94462 0.95164 1.70042 1.36935 1.38362 1.09883 0.85379 0.79573 0.77639 0.78232 1.18070 1.20875 1.21475 1.46152 1.14471 1.54874 1.18204 1.17917 0.82792 0.79106 0.86486 1.90818 1.52251 1.60937 1.40972 1.21000 0.95460 1.05451 0.97596 1.23842 0.99353 0.85778 0.83918 1.67912 1.15697 1.12481 1.24842 1.19120 0.85730 0.88002 0.83159 1.84707 1.82283 1.31756 1.28362 1.22345 0.87967 1.13028 0.98912 1.43331 1.01990 0.98817 1.00228 1.94621 1.44242 1.65683 1.35870 1.94529 1.82826 1.42768 1.14194 1.21548 0.95611 0.84707 0.94876 0.93727 0.93761 0.95333 0.90903 0.93519 0.92670 0.75589 0.76545 0.69237 0.81116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.51 71.98 0.61 -4.62 16 2 C -0.12 -5.49 5.45 30.59 0.17 -5.32 16 3 C 0.28 12.62 2.24 44.24 0.10 12.72 16 4 H 0.01 0.36 7.58 -2.39 -0.02 0.34 16 5 C -0.55 -25.81 8.73 25.60 0.22 -25.59 16 6 H 0.08 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.90 5.29 84.65 0.45 1.34 16 8 N -0.91 -49.12 11.29 21.45 0.24 -48.88 16 9 Si 0.97 39.11 29.54 68.60 2.03 41.14 16 10 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.69 -23.28 4.97 -449.20 -2.23 -25.51 16 14 C 0.55 18.25 6.34 86.72 0.55 18.80 16 15 O -0.57 -23.71 13.55 -3.97 -0.05 -23.77 16 16 C -0.19 -4.51 5.89 -19.99 -0.12 -4.63 16 17 C 0.23 4.04 10.71 85.04 0.91 4.95 16 18 N -0.49 -8.94 10.37 -307.79 -3.19 -12.14 16 19 C 0.42 7.95 7.73 84.81 0.66 8.61 16 20 O -0.46 -6.87 11.57 -66.87 -0.77 -7.64 16 21 C -0.13 -3.01 6.88 36.53 0.25 -2.76 16 22 N 0.04 0.96 4.45 -46.10 -0.21 0.76 16 23 O -0.20 -5.81 18.51 18.87 0.35 -5.46 16 24 O -0.12 -2.79 17.26 25.59 0.44 -2.35 16 25 C 0.06 1.43 9.20 22.70 0.21 1.64 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.72 5.64 -2.39 -0.01 1.71 16 28 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 29 H 0.07 3.73 5.95 -2.39 -0.01 3.71 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.41 10.45 6.59 -92.70 -0.61 9.83 16 33 H 0.22 2.46 6.41 -2.91 -0.02 2.44 16 34 H 0.44 2.13 9.06 -74.06 -0.67 1.46 16 35 H 0.17 4.49 7.36 -2.91 -0.02 4.47 16 Total: -1.00 -65.16 308.58 0.51 -64.65 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.10 Total: 14.05 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.01 Total: 5.15 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -5.39 Total: -85.77 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.04 Total: -39.22 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -65.16 0.51 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194004163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.317 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds