Wall clock time and date at job start Tue Mar 31 2020 07:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36001 * 116.99744 * 2 1 4 4 C 1.38716 * 119.97025 * 180.02562 * 3 2 1 5 5 C 1.38091 * 120.02110 * 180.02562 * 4 3 2 6 6 C 1.38921 * 119.97706 * 359.97412 * 5 4 3 7 7 S 1.76203 * 120.02525 * 180.02562 * 6 5 4 8 8 C 1.81396 * 103.00052 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47265 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99943 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99964 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46864 * 325.00310 * 12 11 9 14 14 C 1.53000 * 109.46908 * 85.00105 * 12 11 9 15 15 C 1.50693 * 109.47398 * 205.00064 * 12 11 9 16 16 H 1.08005 * 120.00291 * 354.36544 * 15 12 11 17 17 C 1.37881 * 120.00259 * 174.36876 * 15 12 11 18 18 N 1.31514 * 120.00212 * 156.61898 * 17 15 12 19 19 Si 1.86795 * 119.99775 * 336.88788 * 17 15 12 20 20 H 1.48501 * 109.47165 * 179.72704 * 19 17 15 21 21 H 1.48500 * 109.47318 * 299.72681 * 19 17 15 22 22 H 1.48500 * 109.47076 * 59.72783 * 19 17 15 23 23 C 1.38916 * 119.95040 * 0.27198 * 6 5 4 24 24 C 1.38093 * 119.97371 * 359.50095 * 23 6 5 25 25 H 1.09002 * 109.47457 * 300.00082 * 1 2 3 26 26 H 1.09000 * 109.47690 * 59.99714 * 1 2 3 27 27 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99235 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.01358 * 179.97438 * 5 4 3 30 30 H 1.09007 * 109.46690 * 60.00271 * 8 7 6 31 31 H 1.08994 * 109.47322 * 300.00488 * 8 7 6 32 32 H 0.96999 * 120.00353 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.47507 * 53.10469 * 14 12 11 34 34 H 1.09003 * 109.46967 * 173.10985 * 14 12 11 35 35 H 1.09007 * 109.46955 * 293.10213 * 14 12 11 36 36 H 0.97003 * 119.99433 * 355.20223 * 18 17 15 37 37 H 1.07995 * 120.01560 * 179.69937 * 23 6 5 38 38 H 1.07998 * 119.98780 * 180.20079 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4316 1.2837 -0.0005 5 6 4.0596 2.5136 0.0000 6 6 3.3035 3.6790 0.0005 7 16 4.1034 5.2490 0.0005 8 6 2.7139 6.4150 0.0005 9 6 3.2423 7.8263 0.0012 10 8 4.4386 8.0259 0.0011 11 7 2.3856 8.8667 0.0018 12 6 2.8993 10.2387 0.0030 13 1 3.8150 10.2832 0.5926 14 6 3.1961 10.6733 -1.4337 15 6 1.8695 11.1602 0.6039 16 1 0.8929 10.7808 0.8665 17 6 2.1738 12.4878 0.8185 18 7 1.2100 13.3794 0.8944 19 14 3.9554 13.0210 0.9938 20 1 4.0138 14.4891 1.2094 21 1 4.5684 12.3256 2.1540 22 1 4.7004 12.6723 -0.2425 23 6 1.9163 3.6058 0.0062 24 6 1.2904 2.3748 0.0010 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0193 0.3776 -0.0005 29 1 5.1382 2.5695 0.0000 30 1 2.1053 6.2549 0.8906 31 1 2.1052 6.2549 -0.8894 32 1 1.4288 8.7071 0.0022 33 1 2.3128 10.5128 -2.0517 34 1 3.4611 11.7306 -1.4460 35 1 4.0262 10.0861 -1.8267 36 1 0.2911 13.1154 0.7305 37 1 1.3275 4.5111 0.0116 38 1 0.2119 2.3176 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194661647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:58 Heat of formation + Delta-G solvation = -72.340796 kcal Electronic energy + Delta-G solvation = -20208.560283 eV Core-core repulsion = 16948.731115 eV Total energy + Delta-G solvation = -3259.829168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.00814 -40.67554 -38.32764 -36.87773 -34.54111 -32.74713 -32.02333 -31.17816 -29.98972 -28.14014 -26.90003 -23.83729 -23.44637 -22.82045 -21.37913 -19.94464 -19.28689 -18.48498 -17.90650 -17.21193 -16.96100 -16.66067 -16.53761 -15.81865 -15.61780 -15.45791 -14.85977 -14.70925 -14.57498 -14.54200 -14.27803 -14.09504 -13.74161 -13.44896 -13.25145 -13.00067 -12.85932 -12.44701 -12.24402 -12.04242 -11.87241 -11.75964 -11.24128 -11.18807 -11.01784 -10.46843 -10.18447 -10.06128 -9.96440 -8.82491 -8.23566 -6.43817 0.22841 0.27034 0.29820 1.39701 1.47036 1.49856 1.57553 1.70484 2.34104 2.38612 2.42449 2.63272 2.94157 3.71734 3.73725 3.85665 3.94895 4.13703 4.20862 4.31277 4.40010 4.44888 4.48514 4.57243 4.70517 4.73816 4.76218 4.92526 5.02156 5.06469 5.24745 5.27146 5.41218 5.55576 5.62244 5.63428 6.00880 6.39006 6.51187 6.70321 7.22171 7.32462 8.55673 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.033748 B = 0.002751 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.473883 B =10175.614529 C =10755.896783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.111 3.889 4 C -0.139 4.139 5 C -0.067 4.067 6 C -0.142 4.142 7 S -0.081 6.081 8 C -0.133 4.133 9 C 0.518 3.482 10 O -0.576 6.576 11 N -0.695 5.695 12 C 0.247 3.753 13 H 0.023 0.977 14 C -0.150 4.150 15 C -0.622 4.622 16 H 0.045 0.955 17 C 0.004 3.996 18 N -0.918 5.918 19 Si 1.064 2.936 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.254 1.254 23 C -0.101 4.101 24 C -0.188 4.188 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.408 0.592 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.141 0.859 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -26.451 -3.191 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.063 3.937 4 C -0.159 4.159 5 C -0.091 4.091 6 C -0.255 4.255 7 S 0.162 5.838 8 C -0.283 4.283 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.345 5.345 12 C 0.142 3.858 13 H 0.041 0.959 14 C -0.208 4.208 15 C -0.659 4.659 16 H 0.064 0.936 17 C -0.198 4.198 18 N -0.552 5.552 19 Si 0.887 3.113 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.179 1.179 23 C -0.125 4.125 24 C -0.208 4.208 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.243 0.757 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.159 0.841 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.765 -24.768 -2.881 24.947 hybrid contribution -3.330 -1.170 -0.156 3.533 sum -2.566 -25.938 -3.037 26.241 Atomic orbital electron populations 1.23351 0.76496 1.05641 1.02254 1.86075 1.23398 1.26501 1.88661 1.19208 0.92660 0.84742 0.97054 1.20560 0.91819 0.98480 1.05044 1.20726 1.00356 0.89734 0.98278 1.21976 0.97025 0.97425 1.09030 1.86368 1.10634 0.94020 1.92825 1.23737 1.01824 0.92936 1.09833 1.20164 0.86490 0.86747 0.76256 1.90687 1.16908 1.86239 1.51870 1.46010 1.10100 1.05845 1.72510 1.18743 0.94686 0.78805 0.93587 0.95948 1.22310 0.99900 1.00460 0.98150 1.22146 1.00073 0.95997 1.47725 0.93648 1.26683 1.07991 0.92912 0.92255 1.70966 1.01914 1.36039 1.46273 0.83761 0.72280 0.76291 0.78974 1.20624 1.19985 1.17873 1.21246 0.92528 0.98933 0.99816 1.21391 1.01260 0.91349 1.06840 0.91772 0.91721 0.86281 0.83256 0.83968 0.84490 0.84075 0.75667 0.92730 0.93006 0.94318 0.92886 0.84098 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.53 10.50 -93.56 -0.98 -6.51 16 3 C 0.11 2.04 6.69 22.50 0.15 2.19 16 4 C -0.14 -2.57 9.98 22.35 0.22 -2.35 16 5 C -0.07 -1.38 9.79 22.40 0.22 -1.16 16 6 C -0.14 -3.19 6.11 22.60 0.14 -3.05 16 7 S -0.08 -2.22 21.06 -56.49 -1.19 -3.40 16 8 C -0.13 -3.26 4.81 71.24 0.34 -2.92 16 9 C 0.52 18.51 7.81 87.66 0.68 19.20 16 10 O -0.58 -25.50 15.53 -3.02 -0.05 -25.55 16 11 N -0.70 -26.16 5.07 -446.11 -2.26 -28.42 16 12 C 0.25 11.47 2.16 44.24 0.10 11.56 16 13 H 0.02 1.15 6.15 -2.38 -0.01 1.14 16 14 C -0.15 -6.50 9.20 71.98 0.66 -5.84 16 15 C -0.62 -32.91 8.95 25.60 0.23 -32.68 16 16 H 0.05 2.51 7.96 -2.91 -0.02 2.49 16 17 C 0.00 0.23 5.19 84.66 0.44 0.67 16 18 N -0.92 -54.18 13.70 21.45 0.29 -53.89 16 19 Si 1.06 49.70 26.44 68.60 1.81 51.51 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.25 -11.01 6.14 99.48 0.61 -10.40 16 23 C -0.10 -1.92 9.36 22.40 0.21 -1.71 16 24 C -0.19 -3.15 9.03 22.35 0.20 -2.95 16 25 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 26 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 27 H 0.12 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.14 2.71 7.73 -2.39 -0.02 2.69 16 31 H 0.14 2.65 7.76 -2.39 -0.02 2.63 16 32 H 0.41 13.02 8.52 -92.71 -0.79 12.23 16 33 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 2.32 5.47 -2.39 -0.01 2.30 16 35 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.26 15.38 8.73 -92.71 -0.81 14.57 16 37 H 0.14 2.15 5.87 -2.91 -0.02 2.13 16 38 H 0.15 1.74 6.29 -2.91 -0.02 1.72 16 Total: -1.00 -69.14 331.88 2.50 -66.64 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.16 Total: 17.39 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.71 Total: -17.77 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -1.97 Total: -82.31 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.03 Total: -32.06 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.81 Total: 51.51 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -1.19 Total: -3.40 kcal Total: -69.14 2.50 -66.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.697 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds