Wall clock time and date at job start Tue Mar 31 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36008 * 116.99772 * 2 1 4 4 C 1.38708 * 119.97421 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.02646 * 180.02562 * 4 3 2 6 6 C 1.38917 * 119.97238 * 359.97438 * 5 4 3 7 7 S 1.76199 * 120.02380 * 179.97438 * 6 5 4 8 8 C 1.81399 * 103.00096 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47197 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00311 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99965 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00067 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46943 * 34.99959 * 12 11 9 14 14 C 1.53000 * 109.47074 * 275.00178 * 12 11 9 15 15 C 1.50696 * 109.46871 * 154.99639 * 12 11 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38917 * 119.95161 * 0.27490 * 6 5 4 24 24 C 1.38087 * 119.97573 * 359.49282 * 23 6 5 25 25 H 1.08999 * 109.46597 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46958 * 300.00475 * 1 2 3 27 27 H 1.09005 * 109.47081 * 60.00478 * 1 2 3 28 28 H 1.08005 * 119.98693 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.01261 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47472 * 59.99704 * 8 7 6 31 31 H 1.09005 * 109.47262 * 299.99986 * 8 7 6 32 32 H 0.97000 * 119.99961 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47024 * 59.99854 * 14 12 11 34 34 H 1.08998 * 109.46637 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.46749 * 299.99711 * 14 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.08007 * 120.01396 * 179.69925 * 23 6 5 38 38 H 1.08003 * 119.98912 * 180.21293 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0597 2.5137 0.0000 6 6 3.3035 3.6791 0.0005 7 16 4.1034 5.2491 0.0019 8 6 2.7138 6.4151 0.0030 9 6 3.2422 7.8263 0.0036 10 8 4.4385 8.0260 0.0038 11 7 2.3854 8.8668 0.0050 12 6 2.8991 10.2388 0.0061 13 1 3.8147 10.2844 -0.5837 14 6 3.1963 10.6709 1.4435 15 6 1.8691 11.1613 -0.5931 16 1 0.9260 10.7653 -0.9397 17 6 2.1308 12.5109 -0.6988 18 7 1.2317 13.3161 -1.2213 19 14 3.7623 13.1956 -0.1000 20 1 3.6420 13.5838 1.3283 21 1 4.8167 12.1600 -0.2443 22 1 4.1253 14.3876 -0.9080 23 6 1.9163 3.6058 0.0063 24 6 1.2905 2.3749 0.0009 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0193 0.3777 -0.0005 29 1 5.1383 2.5696 0.0000 30 1 2.1052 6.2542 0.8928 31 1 2.1051 6.2558 -0.8871 32 1 1.4287 8.7071 0.0052 33 1 3.9413 10.0036 1.8767 34 1 3.5789 11.6915 1.4442 35 1 2.2808 10.6252 2.0332 36 1 1.4157 14.2656 -1.2953 37 1 1.3275 4.5112 0.0116 38 1 0.2120 2.3176 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194661663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:01 Heat of formation + Delta-G solvation = -42.644022 kcal Electronic energy + Delta-G solvation = -20210.572375 eV Core-core repulsion = 16952.030956 eV Total energy + Delta-G solvation = -3258.541419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29119 -39.13063 -37.60062 -35.12469 -32.54479 -31.71755 -30.78500 -30.38586 -28.74927 -27.57633 -25.23380 -23.02227 -22.59350 -21.47408 -19.79227 -18.63527 -17.79409 -17.04551 -16.41152 -16.08914 -16.04907 -15.79381 -15.25824 -14.87521 -14.59695 -14.21809 -13.96633 -13.64555 -13.35429 -13.07687 -13.02897 -12.61121 -12.38512 -12.26995 -12.21372 -11.76032 -11.61261 -11.29731 -11.16812 -10.85264 -10.23835 -10.19707 -9.78719 -9.37396 -9.36034 -9.29818 -9.23178 -8.81473 -8.28693 -7.25490 -6.25721 -4.28977 1.03862 1.04257 1.34193 2.38128 2.96997 3.00940 3.20741 3.33127 3.37402 3.41913 3.77785 4.27790 4.45308 4.56212 4.73914 4.79186 4.96101 4.98539 5.04014 5.07968 5.09394 5.13673 5.25626 5.33767 5.66729 5.77190 6.01404 6.05996 6.25382 6.31775 6.37818 6.49674 6.79172 7.06288 7.09169 7.18127 7.43800 8.02729 8.41144 8.66456 8.77694 9.34450 10.86311 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.002729 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.167163 B =10257.046829 C =10847.544523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.115 3.885 4 C -0.132 4.132 5 C -0.062 4.062 6 C -0.132 4.132 7 S -0.032 6.032 8 C -0.150 4.150 9 C 0.521 3.479 10 O -0.536 6.536 11 N -0.694 5.694 12 C 0.238 3.762 13 H 0.050 0.950 14 C -0.162 4.162 15 C -0.537 4.537 16 H 0.080 0.920 17 C 0.079 3.921 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.276 1.276 21 H -0.261 1.261 22 H -0.293 1.293 23 C -0.097 4.097 24 C -0.187 4.187 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.397 0.603 33 H 0.037 0.963 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.268 0.732 37 H 0.127 0.873 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -24.200 3.543 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.067 3.933 4 C -0.152 4.152 5 C -0.085 4.085 6 C -0.245 4.245 7 S 0.211 5.789 8 C -0.302 4.302 9 C 0.304 3.696 10 O -0.414 6.414 11 N -0.343 5.343 12 C 0.134 3.866 13 H 0.068 0.932 14 C -0.220 4.220 15 C -0.575 4.575 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.186 1.186 22 H -0.221 1.221 23 C -0.121 4.121 24 C -0.207 4.207 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.230 0.770 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.412 -23.609 3.483 23.868 hybrid contribution -1.592 0.289 0.320 1.649 sum -1.180 -23.320 3.803 23.658 Atomic orbital electron populations 1.23058 0.78403 1.03929 1.01442 1.86086 1.21371 1.26871 1.88922 1.19000 0.92372 0.84108 0.97789 1.20346 0.91346 0.98232 1.05265 1.20559 0.99799 0.89696 0.98480 1.22074 0.96461 0.98871 1.07102 1.86207 1.08950 0.91816 1.91938 1.23888 1.02083 0.96847 1.07334 1.19459 0.87169 0.85202 0.77816 1.90711 1.15091 1.85306 1.50341 1.46113 1.09294 1.06687 1.72213 1.19158 0.96735 0.77569 0.93099 0.93180 1.22457 1.00247 0.99759 0.99567 1.21010 1.02814 0.91854 1.41823 0.90163 1.24831 0.96797 0.96629 0.94251 1.69864 1.34413 1.04611 1.43904 0.86873 0.84674 0.78721 0.78244 1.20242 1.18583 1.22066 1.21023 0.92958 0.97879 1.00252 1.21138 1.00005 0.91988 1.07549 0.88250 0.92623 0.92591 0.84743 0.84641 0.86959 0.86841 0.76978 0.94427 0.93305 0.92751 0.92203 0.85492 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.01 10.50 -19.77 -0.21 -3.21 16 3 C 0.11 1.17 6.69 -39.23 -0.26 0.91 16 4 C -0.13 -1.32 9.98 -39.46 -0.39 -1.71 16 5 C -0.06 -0.66 9.79 -39.38 -0.39 -1.04 16 6 C -0.13 -1.57 6.11 -39.08 -0.24 -1.81 16 7 S -0.03 -0.46 21.06 -107.50 -2.26 -2.72 16 8 C -0.15 -1.97 4.81 36.00 0.17 -1.80 16 9 C 0.52 9.47 7.81 -10.98 -0.09 9.39 16 10 O -0.54 -11.87 15.53 5.56 0.09 -11.79 16 11 N -0.69 -13.19 5.07 -54.93 -0.28 -13.47 16 12 C 0.24 5.55 2.15 -69.08 -0.15 5.40 16 13 H 0.05 1.30 6.63 -51.93 -0.34 0.95 16 14 C -0.16 -3.56 8.97 37.16 0.33 -3.23 16 15 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 16 H 0.08 2.22 7.98 -52.49 -0.42 1.81 16 17 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 18 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 19 Si 0.89 21.54 24.37 -169.99 -4.14 17.40 16 20 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 21 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C -0.10 -1.03 9.36 -39.39 -0.37 -1.40 16 24 C -0.19 -1.80 9.03 -39.46 -0.36 -2.15 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 27 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 28 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.11 1.20 7.73 -51.93 -0.40 0.79 16 31 H 0.11 1.26 7.76 -51.92 -0.40 0.85 16 32 H 0.40 6.43 8.54 -40.82 -0.35 6.08 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.13 1.15 5.87 -52.48 -0.31 0.85 16 38 H 0.13 0.95 6.29 -52.48 -0.33 0.62 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -32.45 328.50 -7.06 -39.51 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.81 Total: 3.41 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.77 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.50 Total: -38.79 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.12 Total: -15.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.14 Total: 17.40 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -2.26 Total: -2.72 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.45 -7.06 -39.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds