Wall clock time and date at job start Tue Mar 31 2020 07:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36008 * 116.99772 * 2 1 4 4 C 1.38708 * 119.97421 * 180.02562 * 3 2 1 5 5 C 1.38092 * 120.02646 * 180.02562 * 4 3 2 6 6 C 1.38917 * 119.97238 * 359.97438 * 5 4 3 7 7 S 1.76199 * 120.02380 * 179.97438 * 6 5 4 8 8 C 1.81399 * 103.00096 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47197 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00311 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99965 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00067 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46943 * 34.99959 * 12 11 9 14 14 C 1.53000 * 109.47074 * 275.00178 * 12 11 9 15 15 C 1.50696 * 109.46871 * 154.99639 * 12 11 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38917 * 119.95161 * 0.27490 * 6 5 4 24 24 C 1.38087 * 119.97573 * 359.49282 * 23 6 5 25 25 H 1.08999 * 109.46597 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46958 * 300.00475 * 1 2 3 27 27 H 1.09005 * 109.47081 * 60.00478 * 1 2 3 28 28 H 1.08005 * 119.98693 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.01261 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47472 * 59.99704 * 8 7 6 31 31 H 1.09005 * 109.47262 * 299.99986 * 8 7 6 32 32 H 0.97000 * 119.99961 * 359.97438 * 11 9 8 33 33 H 1.08996 * 109.47024 * 59.99854 * 14 12 11 34 34 H 1.08998 * 109.46637 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.46749 * 299.99711 * 14 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.08007 * 120.01396 * 179.69925 * 23 6 5 38 38 H 1.08003 * 119.98912 * 180.21293 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 3.4317 1.2839 -0.0005 5 6 4.0597 2.5137 0.0000 6 6 3.3035 3.6791 0.0005 7 16 4.1034 5.2491 0.0019 8 6 2.7138 6.4151 0.0030 9 6 3.2422 7.8263 0.0036 10 8 4.4385 8.0260 0.0038 11 7 2.3854 8.8668 0.0050 12 6 2.8991 10.2388 0.0061 13 1 3.8147 10.2844 -0.5837 14 6 3.1963 10.6709 1.4435 15 6 1.8691 11.1613 -0.5931 16 1 0.9260 10.7653 -0.9397 17 6 2.1308 12.5109 -0.6988 18 7 1.2317 13.3161 -1.2213 19 14 3.7623 13.1956 -0.1000 20 1 3.6420 13.5838 1.3283 21 1 4.8167 12.1600 -0.2443 22 1 4.1253 14.3876 -0.9080 23 6 1.9163 3.6058 0.0063 24 6 1.2905 2.3749 0.0009 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0193 0.3777 -0.0005 29 1 5.1383 2.5696 0.0000 30 1 2.1052 6.2542 0.8928 31 1 2.1051 6.2558 -0.8871 32 1 1.4287 8.7071 0.0052 33 1 3.9413 10.0036 1.8767 34 1 3.5789 11.6915 1.4442 35 1 2.2808 10.6252 2.0332 36 1 1.4157 14.2656 -1.2953 37 1 1.3275 4.5112 0.0116 38 1 0.2120 2.3176 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194661663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:00 Heat of formation + Delta-G solvation = -64.719719 kcal Electronic energy + Delta-G solvation = -20211.529649 eV Core-core repulsion = 16952.030956 eV Total energy + Delta-G solvation = -3259.498693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98912 -40.67516 -38.30909 -36.90353 -34.46151 -32.78588 -32.08699 -31.16622 -30.07869 -28.12487 -27.22942 -23.86659 -23.49447 -22.97950 -21.39487 -19.56561 -19.03195 -18.34483 -17.69547 -17.51507 -17.08526 -16.64769 -16.53987 -16.09182 -15.59541 -15.52035 -15.02665 -14.79386 -14.65587 -14.31277 -14.21820 -14.13135 -13.77662 -13.60875 -13.17409 -12.99150 -12.84367 -12.76374 -12.22610 -12.15524 -11.85542 -11.63825 -11.29827 -11.16314 -10.96336 -10.87585 -10.16301 -10.03973 -9.93345 -8.39289 -8.21569 -6.45247 0.24772 0.28980 0.32064 1.27148 1.35978 1.42030 1.44859 1.59280 2.25384 2.34622 2.39665 2.65193 2.97158 3.73327 3.75962 3.87672 3.98828 4.17058 4.23129 4.33110 4.41740 4.44177 4.47022 4.55207 4.59139 4.69176 4.75392 4.94621 4.98343 5.03959 5.26735 5.28851 5.29769 5.40300 5.57551 5.64087 6.10005 6.40732 6.56005 6.75080 7.15904 7.33890 8.75748 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.035160 B = 0.002729 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.167163 B =10257.046829 C =10847.544523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.111 3.889 4 C -0.139 4.139 5 C -0.068 4.068 6 C -0.141 4.141 7 S -0.083 6.083 8 C -0.132 4.132 9 C 0.520 3.480 10 O -0.578 6.578 11 N -0.692 5.692 12 C 0.243 3.757 13 H 0.023 0.977 14 C -0.156 4.156 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.030 3.970 18 N -0.932 5.932 19 Si 0.937 3.063 20 H -0.259 1.259 21 H -0.263 1.263 22 H -0.293 1.293 23 C -0.101 4.101 24 C -0.188 4.188 25 H 0.119 0.881 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.271 0.729 37 H 0.143 0.857 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 -25.963 4.407 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.063 3.937 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.254 4.254 7 S 0.159 5.841 8 C -0.283 4.283 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.342 5.342 12 C 0.138 3.862 13 H 0.041 0.959 14 C -0.214 4.214 15 C -0.571 4.571 16 H 0.078 0.922 17 C -0.170 4.170 18 N -0.571 5.571 19 Si 0.764 3.236 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.220 1.220 23 C -0.124 4.124 24 C -0.208 4.208 25 H 0.137 0.863 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.167 0.833 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.248 0.752 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.448 -25.416 4.358 25.791 hybrid contribution -1.424 0.660 0.008 1.570 sum -1.872 -24.756 4.367 25.208 Atomic orbital electron populations 1.23353 0.76487 1.05623 1.02278 1.86077 1.23408 1.26528 1.88674 1.19210 0.92648 0.84760 0.97080 1.20551 0.91839 0.98461 1.05114 1.20719 1.00327 0.89770 0.98336 1.21967 0.97041 0.97385 1.09012 1.86385 1.10773 0.94099 1.92838 1.23739 1.01754 0.92732 1.10051 1.20156 0.86409 0.86758 0.76160 1.90696 1.17038 1.86258 1.51866 1.45896 1.10308 1.05457 1.72555 1.18794 0.94630 0.79390 0.93427 0.95909 1.22353 1.01169 0.99377 0.98547 1.21237 1.02594 0.92334 1.40927 0.92166 1.25535 0.99590 0.97228 0.94647 1.69968 1.36317 1.05069 1.45770 0.86037 0.81025 0.77885 0.78632 1.18482 1.18783 1.22047 1.21262 0.92499 0.98977 0.99710 1.21399 1.01277 0.91343 1.06797 0.86321 0.91689 0.91753 0.83337 0.84045 0.83821 0.84327 0.75249 0.93525 0.94090 0.91352 0.92020 0.83928 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.33 -5.53 10.50 -93.64 -0.98 -6.51 16 3 C 0.11 2.03 6.69 22.50 0.15 2.18 16 4 C -0.14 -2.58 9.98 22.35 0.22 -2.36 16 5 C -0.07 -1.39 9.79 22.40 0.22 -1.17 16 6 C -0.14 -3.15 6.11 22.60 0.14 -3.01 16 7 S -0.08 -2.26 21.06 -56.49 -1.19 -3.45 16 8 C -0.13 -3.17 4.81 71.24 0.34 -2.82 16 9 C 0.52 18.25 7.81 87.66 0.68 18.94 16 10 O -0.58 -25.46 15.53 -3.03 -0.05 -25.50 16 11 N -0.69 -25.43 5.07 -446.08 -2.26 -27.69 16 12 C 0.24 11.19 2.15 44.24 0.10 11.28 16 13 H 0.02 1.19 6.63 -2.38 -0.02 1.18 16 14 C -0.16 -6.63 8.97 71.98 0.65 -5.98 16 15 C -0.53 -28.28 9.31 25.60 0.24 -28.04 16 16 H 0.06 3.37 7.98 -2.91 -0.02 3.34 16 17 C 0.03 1.67 5.45 84.66 0.46 2.13 16 18 N -0.93 -55.09 13.96 21.45 0.30 -54.79 16 19 Si 0.94 44.24 24.37 68.60 1.67 45.91 16 20 H -0.26 -11.48 6.87 99.48 0.68 -10.79 16 21 H -0.26 -12.41 6.53 99.48 0.65 -11.76 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 C -0.10 -1.88 9.36 22.40 0.21 -1.67 16 24 C -0.19 -3.11 9.03 22.35 0.20 -2.90 16 25 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 27 H 0.06 0.45 7.66 -2.38 -0.02 0.44 16 28 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.14 2.56 7.73 -2.39 -0.02 2.54 16 31 H 0.14 2.65 7.76 -2.39 -0.02 2.63 16 32 H 0.41 12.60 8.54 -92.71 -0.79 11.81 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.79 3.28 -2.39 -0.01 1.78 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.14 2.10 5.87 -2.91 -0.02 2.08 16 38 H 0.15 1.71 6.29 -2.91 -0.02 1.69 16 Total: -1.00 -70.29 328.50 2.43 -67.86 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.22 Total: 16.35 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.72 Total: -12.17 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -1.96 Total: -82.48 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.03 Total: -32.02 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.91 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -1.19 Total: -3.45 kcal Total: -70.29 2.43 -67.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194661663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.138 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds