Wall clock time and date at job start Tue Mar 31 2020 07:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00349 * 2 1 4 4 C 1.53010 * 109.47026 * 125.00496 * 3 2 1 5 5 H 1.08995 * 109.47191 * 55.00279 * 4 3 2 6 6 C 1.53001 * 109.46989 * 175.00476 * 4 3 2 7 7 N 1.46504 * 109.46860 * 295.00414 * 4 3 2 8 8 S 1.65593 * 119.99783 * 144.99855 * 7 4 3 9 9 O 1.42100 * 106.40131 * 178.53319 * 8 7 4 10 10 O 1.42093 * 106.40724 * 311.46075 * 8 7 4 11 11 C 1.76204 * 107.21670 * 64.99938 * 8 7 4 12 12 C 1.38632 * 119.75190 * 269.72430 * 11 8 7 13 13 C 1.37622 * 120.25277 * 179.71770 * 12 11 8 14 14 C 1.40715 * 119.73837 * 0.57642 * 13 12 11 15 15 C 1.41395 * 120.23925 * 179.67539 * 14 13 12 16 16 H 1.07998 * 120.00138 * 24.41148 * 15 14 13 17 17 C 1.39950 * 120.00054 * 204.41136 * 15 14 13 18 18 N 1.30819 * 119.99888 * 17.85730 * 17 15 14 19 19 Si 1.86801 * 119.99891 * 197.85842 * 17 15 14 20 20 H 1.48498 * 109.47223 * 60.00417 * 19 17 15 21 21 H 1.48503 * 109.46725 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47250 * 299.99744 * 19 17 15 23 23 C 1.40710 * 119.51844 * 359.70290 * 14 13 12 24 24 C 1.37618 * 119.74289 * 359.97438 * 23 14 13 25 25 H 1.08007 * 119.99520 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00074 * 179.72679 * 1 2 3 27 27 H 1.08001 * 120.00196 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47750 * 245.00666 * 3 2 1 29 29 H 1.09005 * 109.47225 * 5.00714 * 3 2 1 30 30 H 1.08995 * 109.47314 * 59.99879 * 6 4 3 31 31 H 1.09000 * 109.46521 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.46494 * 299.99915 * 6 4 3 33 33 H 0.97000 * 119.99721 * 324.99383 * 7 4 3 34 34 H 1.08007 * 119.87173 * 359.97438 * 12 11 8 35 35 H 1.07998 * 120.12728 * 180.27250 * 13 12 11 36 36 H 0.97003 * 120.00207 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.13279 * 179.97438 * 23 14 13 38 38 H 1.07996 * 119.87970 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 1 3.6828 0.4571 1.1402 6 6 3.8877 2.6014 1.1111 7 7 2.2787 1.3220 2.4362 8 16 2.8755 0.5192 3.7559 9 8 1.9406 0.7234 4.8064 10 8 3.2633 -0.7696 3.3002 11 6 4.3563 1.3418 4.2410 12 6 5.5721 0.9403 3.7094 13 6 6.7343 1.5793 4.0767 14 6 6.6866 2.6359 5.0048 15 6 7.8751 3.2953 5.3948 16 1 8.7347 3.2906 4.7411 17 6 7.9374 3.9540 6.6280 18 7 7.0605 3.6821 7.5599 19 14 9.2728 5.2216 6.9433 20 1 9.1537 6.3227 5.9541 21 1 9.1212 5.7694 8.3152 22 1 10.6054 4.5799 6.8117 23 6 5.4478 3.0311 5.5423 24 6 4.2975 2.3822 5.1555 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0897 30 1 3.2401 3.4772 1.1525 31 1 4.5795 2.6214 1.9531 32 1 4.4504 2.6094 0.1776 33 1 1.4284 1.7851 2.4938 34 1 5.6068 0.1256 3.0012 35 1 7.6798 1.2677 3.6580 36 1 7.1034 4.1389 8.4145 37 1 5.3997 3.8406 6.2556 38 1 3.3454 2.6840 5.5663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223274128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:20 Heat of formation + Delta-G solvation = -57.934563 kcal Electronic energy + Delta-G solvation = -21665.779585 eV Core-core repulsion = 18406.575118 eV Total energy + Delta-G solvation = -3259.204467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -37.64802 -37.33988 -36.36744 -35.08256 -34.05048 -33.41909 -30.26769 -29.88775 -29.44825 -26.54076 -25.78382 -21.52558 -21.38723 -21.10501 -19.95925 -18.86918 -17.62140 -17.12788 -16.55951 -16.04077 -15.44742 -14.78835 -14.48198 -14.10208 -13.87133 -13.58938 -13.38833 -13.18144 -12.66407 -12.52220 -12.29420 -12.17853 -11.72553 -11.66535 -11.43477 -11.37992 -11.28362 -11.22465 -11.17054 -10.96646 -10.90207 -10.67725 -10.44207 -9.76182 -9.66254 -9.48320 -9.35854 -9.00204 -7.94888 -7.69418 -7.13547 -4.79850 1.30380 2.26739 2.29713 2.87632 2.89194 2.91970 2.94335 3.65758 3.76627 4.25291 4.55998 4.76268 4.95660 5.16692 5.22960 5.34267 5.38756 5.53510 5.57900 5.75015 5.80944 5.97569 6.05420 6.06873 6.13389 6.41572 6.55164 6.64874 6.68506 6.71472 6.76358 6.92847 7.04940 7.33055 7.37343 7.43953 7.64588 7.76952 7.97198 8.32308 8.51568 8.65321 9.77912 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.004083 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.921194 B = 6855.970817 C = 7258.850105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.098 4.098 4 C 0.157 3.843 5 H 0.090 0.910 6 C -0.178 4.178 7 N -1.119 6.119 8 S 2.693 3.307 9 O -0.987 6.987 10 O -0.987 6.987 11 C -0.786 4.786 12 C 0.001 3.999 13 C -0.238 4.238 14 C 0.140 3.860 15 C -0.437 4.437 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.765 5.765 19 Si 0.917 3.083 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.184 4.184 24 C -0.013 4.013 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.408 0.592 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.290 0.710 37 H 0.121 0.879 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 0.633 -10.505 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.161 4.161 3 C -0.137 4.137 4 C 0.049 3.951 5 H 0.108 0.892 6 C -0.236 4.236 7 N -0.875 5.875 8 S 2.791 3.209 9 O -0.977 6.977 10 O -0.977 6.977 11 C -0.882 4.882 12 C -0.019 4.019 13 C -0.259 4.259 14 C 0.137 3.863 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.387 5.387 19 Si 0.740 3.260 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.204 4.204 24 C -0.034 4.034 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.927 -0.187 -9.888 11.530 hybrid contribution 0.757 1.257 0.349 1.509 sum -5.170 1.070 -9.539 10.903 Atomic orbital electron populations 1.23786 0.95960 1.01578 1.02704 1.22994 0.96111 0.98659 0.98376 1.21093 0.98487 0.95785 0.98292 1.20637 0.92285 0.99121 0.83032 0.89175 1.22410 1.00528 0.97431 1.03278 1.55778 1.32793 1.72987 1.25901 1.01202 0.74165 0.73628 0.71862 1.93491 1.63134 1.86711 1.54396 1.93472 1.84356 1.38184 1.81665 1.29144 1.15201 1.22030 1.21780 1.20139 0.91773 0.95131 0.94820 1.21008 0.96390 1.01063 1.07431 1.17829 0.92968 0.87660 0.87869 1.19906 0.99043 1.26166 1.01334 0.89514 1.26136 0.97221 0.96202 0.95442 1.69817 1.31735 1.33076 1.04075 0.86201 0.80774 0.80500 0.78489 1.18382 1.19918 1.18576 1.21329 0.91374 1.02923 1.04811 1.20241 0.97846 0.92437 0.92835 0.88801 0.88741 0.87105 0.89796 0.90988 0.92341 0.90221 0.91984 0.75895 0.87930 0.88264 0.89891 0.86075 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.09 14.32 29.02 0.42 -1.67 16 2 C -0.14 -1.59 9.24 -36.03 -0.33 -1.92 16 3 C -0.10 -1.00 5.26 -27.88 -0.15 -1.15 16 4 C 0.16 2.01 2.90 -67.92 -0.20 1.82 16 5 H 0.09 1.23 7.50 -51.93 -0.39 0.84 16 6 C -0.18 -2.26 9.52 37.16 0.35 -1.91 16 7 N -1.12 -16.33 5.19 -4.89 -0.03 -16.35 16 8 S 2.69 51.95 5.71 -107.50 -0.61 51.33 16 9 O -0.99 -21.56 17.26 -57.17 -0.99 -22.55 16 10 O -0.99 -20.88 16.59 -57.17 -0.95 -21.83 16 11 C -0.79 -16.96 5.08 -39.29 -0.20 -17.16 16 12 C 0.00 0.03 8.57 -39.66 -0.34 -0.31 16 13 C -0.24 -5.49 9.80 -38.87 -0.38 -5.87 16 14 C 0.14 3.50 5.58 -106.83 -0.60 2.90 16 15 C -0.44 -10.60 9.05 -37.74 -0.34 -10.95 16 16 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 17 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 18 N -0.76 -18.32 10.95 55.55 0.61 -17.71 16 19 Si 0.92 16.91 29.60 -169.99 -5.03 11.88 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 C -0.18 -4.55 8.70 -38.88 -0.34 -4.89 16 24 C -0.01 -0.31 9.49 -39.66 -0.38 -0.68 16 25 H 0.09 0.86 7.84 -52.48 -0.41 0.45 16 26 H 0.09 0.90 8.06 -52.49 -0.42 0.47 16 27 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.67 7.79 -51.93 -0.40 0.26 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.25 6.18 -51.93 -0.32 0.93 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 5.11 8.84 -34.47 -0.30 4.80 16 34 H 0.10 2.00 7.59 -52.48 -0.40 1.61 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 38 H 0.10 2.20 7.60 -52.49 -0.40 1.80 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -29.40 333.56 -9.58 -38.97 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.04 Total: 11.44 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: -2.57 Total: -40.22 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.58 Total: -34.07 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.94 Total: -44.38 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.61 Total: 51.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.40 -9.58 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223274128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.960 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds