Wall clock time and date at job start Tue Mar 31 2020 07:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00349 * 2 1 4 4 C 1.53010 * 109.47026 * 125.00496 * 3 2 1 5 5 H 1.08995 * 109.47191 * 55.00279 * 4 3 2 6 6 C 1.53001 * 109.46989 * 175.00476 * 4 3 2 7 7 N 1.46504 * 109.46860 * 295.00414 * 4 3 2 8 8 S 1.65593 * 119.99783 * 144.99855 * 7 4 3 9 9 O 1.42100 * 106.40131 * 178.53319 * 8 7 4 10 10 O 1.42093 * 106.40724 * 311.46075 * 8 7 4 11 11 C 1.76204 * 107.21670 * 64.99938 * 8 7 4 12 12 C 1.38632 * 119.75190 * 269.72430 * 11 8 7 13 13 C 1.37622 * 120.25277 * 179.71770 * 12 11 8 14 14 C 1.40715 * 119.73837 * 0.57642 * 13 12 11 15 15 C 1.41395 * 120.23925 * 179.67539 * 14 13 12 16 16 H 1.07998 * 120.00138 * 24.41148 * 15 14 13 17 17 C 1.39950 * 120.00054 * 204.41136 * 15 14 13 18 18 N 1.30819 * 119.99888 * 17.85730 * 17 15 14 19 19 Si 1.86801 * 119.99891 * 197.85842 * 17 15 14 20 20 H 1.48498 * 109.47223 * 60.00417 * 19 17 15 21 21 H 1.48503 * 109.46725 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47250 * 299.99744 * 19 17 15 23 23 C 1.40710 * 119.51844 * 359.70290 * 14 13 12 24 24 C 1.37618 * 119.74289 * 359.97438 * 23 14 13 25 25 H 1.08007 * 119.99520 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00074 * 179.72679 * 1 2 3 27 27 H 1.08001 * 120.00196 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47750 * 245.00666 * 3 2 1 29 29 H 1.09005 * 109.47225 * 5.00714 * 3 2 1 30 30 H 1.08995 * 109.47314 * 59.99879 * 6 4 3 31 31 H 1.09000 * 109.46521 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.46494 * 299.99915 * 6 4 3 33 33 H 0.97000 * 119.99721 * 324.99383 * 7 4 3 34 34 H 1.08007 * 119.87173 * 359.97438 * 12 11 8 35 35 H 1.07998 * 120.12728 * 180.27250 * 13 12 11 36 36 H 0.97003 * 120.00207 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.13279 * 179.97438 * 23 14 13 38 38 H 1.07996 * 119.87970 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 1 3.6828 0.4571 1.1402 6 6 3.8877 2.6014 1.1111 7 7 2.2787 1.3220 2.4362 8 16 2.8755 0.5192 3.7559 9 8 1.9406 0.7234 4.8064 10 8 3.2633 -0.7696 3.3002 11 6 4.3563 1.3418 4.2410 12 6 5.5721 0.9403 3.7094 13 6 6.7343 1.5793 4.0767 14 6 6.6866 2.6359 5.0048 15 6 7.8751 3.2953 5.3948 16 1 8.7347 3.2906 4.7411 17 6 7.9374 3.9540 6.6280 18 7 7.0605 3.6821 7.5599 19 14 9.2728 5.2216 6.9433 20 1 9.1537 6.3227 5.9541 21 1 9.1212 5.7694 8.3152 22 1 10.6054 4.5799 6.8117 23 6 5.4478 3.0311 5.5423 24 6 4.2975 2.3822 5.1555 25 1 -0.5400 0.9354 0.0004 26 1 -0.5400 -0.9353 -0.0045 27 1 1.8500 -0.9353 -0.0004 28 1 2.6213 1.4027 -0.9314 29 1 1.3586 2.1317 0.0897 30 1 3.2401 3.4772 1.1525 31 1 4.5795 2.6214 1.9531 32 1 4.4504 2.6094 0.1776 33 1 1.4284 1.7851 2.4938 34 1 5.6068 0.1256 3.0012 35 1 7.6798 1.2677 3.6580 36 1 7.1034 4.1389 8.4145 37 1 5.3997 3.8406 6.2556 38 1 3.3454 2.6840 5.5663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223274128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:19 Heat of formation + Delta-G solvation = -76.307868 kcal Electronic energy + Delta-G solvation = -21666.576311 eV Core-core repulsion = 18406.575118 eV Total energy + Delta-G solvation = -3260.001193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.39104 -38.49779 -37.94636 -36.76181 -35.79673 -34.36336 -32.05339 -31.31095 -30.95935 -27.65768 -27.32942 -23.27166 -22.96967 -22.40248 -20.86255 -20.27539 -19.40695 -18.67885 -18.12757 -17.36215 -17.01280 -16.21174 -15.82866 -15.44753 -15.21085 -14.97565 -14.82631 -14.53211 -14.11972 -13.96867 -13.74375 -13.54449 -13.32617 -13.09417 -13.01271 -12.91014 -12.85513 -12.56580 -12.55171 -12.44994 -12.02645 -11.84316 -11.68516 -11.51944 -11.32991 -11.17163 -10.44224 -10.07093 -9.74909 -9.51410 -8.85743 -6.63247 -0.26204 0.51326 1.08171 1.36123 1.44809 1.48894 1.50582 2.11681 2.28748 2.56647 2.97050 3.55097 3.62836 3.85911 4.10735 4.27225 4.33715 4.34177 4.43632 4.55529 4.62950 4.84063 4.89192 4.95863 5.00407 5.09293 5.13078 5.16519 5.26035 5.38396 5.51986 5.54394 5.61857 5.79158 5.84941 5.94610 5.95733 6.17558 6.27712 6.51148 6.70256 6.83247 8.09167 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.004083 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.921194 B = 6855.970817 C = 7258.850105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.089 4.089 4 C 0.151 3.849 5 H 0.082 0.918 6 C -0.176 4.176 7 N -1.102 6.102 8 S 2.721 3.279 9 O -1.012 7.012 10 O -1.002 7.002 11 C -0.790 4.790 12 C 0.003 3.997 13 C -0.253 4.253 14 C 0.114 3.886 15 C -0.468 4.468 16 H 0.093 0.907 17 C 0.034 3.966 18 N -0.800 5.800 19 Si 0.992 3.008 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.255 1.255 23 C -0.207 4.207 24 C -0.019 4.019 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.422 0.578 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.298 0.702 37 H 0.108 0.892 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 1.182 -12.014 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.181 4.181 3 C -0.128 4.128 4 C 0.044 3.956 5 H 0.100 0.900 6 C -0.235 4.235 7 N -0.863 5.863 8 S 2.817 3.183 9 O -1.002 7.002 10 O -0.992 6.992 11 C -0.883 4.883 12 C -0.016 4.016 13 C -0.274 4.274 14 C 0.110 3.890 15 C -0.495 4.495 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.423 5.423 19 Si 0.811 3.189 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.179 1.179 23 C -0.228 4.228 24 C -0.039 4.039 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.257 0.743 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.256 0.364 -11.390 13.000 hybrid contribution 0.725 0.999 0.717 1.428 sum -5.531 1.363 -10.673 12.098 Atomic orbital electron populations 1.23989 0.95845 1.02508 1.01350 1.23075 0.96566 0.98799 0.99658 1.21058 0.98219 0.95864 0.97647 1.20867 0.92871 0.98901 0.82955 0.89992 1.22383 1.00255 0.97756 1.03085 1.55351 1.33195 1.72651 1.25110 1.00330 0.72899 0.73132 0.71957 1.93453 1.63352 1.87009 1.56395 1.93451 1.84533 1.39258 1.81988 1.29571 1.16810 1.20979 1.20976 1.20384 0.91373 0.95206 0.94682 1.21227 0.97548 1.01039 1.07562 1.18164 0.93429 0.88579 0.88782 1.20214 0.99263 1.27635 1.02411 0.88903 1.27030 0.99428 0.97492 0.94572 1.69864 1.33517 1.34184 1.04763 0.85092 0.77658 0.77585 0.78569 1.17926 1.19091 1.17913 1.21329 0.92243 1.03574 1.05621 1.20408 0.97727 0.92759 0.93042 0.87439 0.88376 0.87997 0.87634 0.89477 0.91277 0.93443 0.89715 0.74254 0.85825 0.87086 0.89130 0.87380 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.59 14.32 67.79 0.97 -2.62 16 2 C -0.16 -3.22 9.24 25.65 0.24 -2.99 16 3 C -0.09 -1.54 5.26 29.85 0.16 -1.39 16 4 C 0.15 3.54 2.90 44.99 0.13 3.67 16 5 H 0.08 2.09 7.50 -2.39 -0.02 2.07 16 6 C -0.18 -4.13 9.52 71.98 0.69 -3.45 16 7 N -1.10 -30.17 5.19 -169.37 -0.88 -31.05 16 8 S 2.72 102.51 5.71 -56.49 -0.32 102.18 16 9 O -1.01 -43.46 17.26 -128.00 -2.21 -45.67 16 10 O -1.00 -41.30 16.59 -128.00 -2.12 -43.43 16 11 C -0.79 -34.11 5.08 22.46 0.11 -34.00 16 12 C 0.00 0.14 8.57 22.22 0.19 0.33 16 13 C -0.25 -11.85 9.80 22.73 0.22 -11.62 16 14 C 0.11 5.84 5.58 -21.29 -0.12 5.72 16 15 C -0.47 -23.23 9.05 23.46 0.21 -23.02 16 16 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 17 C 0.03 1.58 5.14 85.26 0.44 2.01 16 18 N -0.80 -39.28 10.95 21.83 0.24 -39.04 16 19 Si 0.99 34.50 29.60 68.60 2.03 36.53 16 20 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 21 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 22 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 23 C -0.21 -10.62 8.70 22.73 0.20 -10.43 16 24 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 25 H 0.11 1.61 7.84 -2.91 -0.02 1.59 16 26 H 0.10 1.66 8.06 -2.91 -0.02 1.63 16 27 H 0.10 2.18 8.06 -2.91 -0.02 2.15 16 28 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.27 7.79 -2.38 -0.02 1.25 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.44 6.18 -2.39 -0.01 1.42 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.42 9.55 8.84 -96.75 -0.85 8.70 16 34 H 0.12 4.72 7.59 -2.91 -0.02 4.70 16 35 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.30 13.07 8.30 -92.71 -0.77 12.30 16 37 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 38 H 0.11 4.86 7.60 -2.91 -0.02 4.84 16 Total: -1.00 -63.66 333.56 0.59 -63.07 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.21 Total: 35.88 kcal Atomic # 6 Polarization: -82.12 SS G_CDS: 3.65 Total: -78.47 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.64 Total: -70.09 kcal Atomic # 8 Polarization: -84.76 SS G_CDS: -4.33 Total: -89.09 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: 102.51 SS G_CDS: -0.32 Total: 102.18 kcal Total: -63.66 0.59 -63.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223274128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.243 kcal (2) G-P(sol) polarization free energy of solvation -63.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds