Wall clock time and date at job start Tue Mar 31 2020 07:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00351 * 2 1 4 4 C 1.53001 * 109.47186 * 124.99879 * 3 2 1 5 5 H 1.09003 * 109.47341 * 305.00258 * 4 3 2 6 6 C 1.52998 * 109.46968 * 185.00086 * 4 3 2 7 7 N 1.46502 * 109.47078 * 65.00535 * 4 3 2 8 8 S 1.65595 * 119.99755 * 214.72529 * 7 4 3 9 9 O 1.42107 * 106.40010 * 178.81470 * 8 7 4 10 10 O 1.42097 * 106.40490 * 311.73145 * 8 7 4 11 11 C 1.76196 * 107.22290 * 65.27292 * 8 7 4 12 12 C 1.38630 * 119.74913 * 269.73051 * 11 8 7 13 13 C 1.37623 * 120.25034 * 179.71608 * 12 11 8 14 14 C 1.40720 * 119.73917 * 0.57109 * 13 12 11 15 15 C 1.41392 * 120.24346 * 179.68068 * 14 13 12 16 16 H 1.08000 * 120.00428 * 24.40733 * 15 14 13 17 17 C 1.39947 * 120.00253 * 204.41283 * 15 14 13 18 18 N 1.30831 * 119.99849 * 17.85120 * 17 15 14 19 19 Si 1.86803 * 120.00262 * 197.85655 * 17 15 14 20 20 H 1.48493 * 109.47062 * 59.99496 * 19 17 15 21 21 H 1.48494 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46751 * 299.99844 * 19 17 15 23 23 C 1.40720 * 119.51269 * 359.70437 * 14 13 12 24 24 C 1.37616 * 119.74404 * 359.97438 * 23 14 13 25 25 H 1.07994 * 120.00130 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99832 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00328 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47000 * 5.00102 * 3 2 1 29 29 H 1.09000 * 109.47493 * 245.00588 * 3 2 1 30 30 H 1.09007 * 109.47330 * 60.00355 * 6 4 3 31 31 H 1.09002 * 109.47499 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47871 * 300.00126 * 6 4 3 33 33 H 0.96999 * 119.99652 * 34.99420 * 7 4 3 34 34 H 1.07998 * 119.88004 * 359.97438 * 12 11 8 35 35 H 1.07994 * 120.13238 * 180.27610 * 13 12 11 36 36 H 0.97001 * 119.99764 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.12313 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4883 1.1468 2.1061 6 6 3.7092 2.7045 1.2552 7 7 4.0547 0.2968 1.0001 8 16 4.6634 -0.5051 2.3149 9 8 5.5967 -1.4509 1.8112 10 8 5.0043 0.4905 3.2697 11 6 3.3417 -1.4354 3.0165 12 6 2.5439 -0.8656 3.9966 13 6 1.5051 -1.5808 4.5475 14 6 1.2619 -2.8995 4.1207 15 6 0.2018 -3.6463 4.6842 16 1 -0.6438 -3.1374 5.1230 17 6 0.2481 -5.0450 4.6736 18 7 1.3855 -5.6602 4.4751 19 14 -1.3139 -6.0334 4.9427 20 1 -2.2998 -5.6991 3.8839 21 1 -0.9984 -7.4833 4.8847 22 1 -1.8854 -5.7035 6.2731 23 6 2.0817 -3.4695 3.1292 24 6 3.1106 -2.7333 2.5876 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 2.9506 3.4755 1.3903 31 1 4.4011 2.7246 2.0973 32 1 4.2560 2.8908 0.3309 33 1 4.3760 0.0833 0.1102 34 1 2.7356 0.1448 4.3263 35 1 0.8821 -1.1335 5.3078 36 1 1.4176 -6.6297 4.4674 37 1 1.9041 -4.4809 2.7945 38 1 3.7409 -3.1686 1.8263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223274185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:22 Heat of formation + Delta-G solvation = -57.966836 kcal Electronic energy + Delta-G solvation = -21901.534778 eV Core-core repulsion = 18642.328912 eV Total energy + Delta-G solvation = -3259.205866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.60970 -37.32293 -36.37356 -35.08986 -34.03061 -33.33699 -30.24955 -29.85900 -29.46111 -26.50303 -25.80786 -21.55504 -21.48094 -21.04738 -19.60398 -18.97615 -17.62101 -17.17215 -16.46426 -15.91121 -15.44801 -15.04769 -14.47042 -14.14060 -13.81930 -13.39265 -13.22608 -13.14909 -12.85372 -12.40828 -12.18396 -12.14027 -11.77477 -11.73006 -11.44348 -11.36291 -11.32500 -11.22874 -11.19105 -10.88049 -10.79934 -10.76518 -10.43298 -9.78450 -9.65940 -9.48256 -9.20520 -8.95359 -7.94736 -7.69165 -7.13163 -4.79216 1.29167 2.27394 2.51746 2.87757 2.89472 2.92598 2.94573 3.65981 3.74990 4.25311 4.54990 4.87128 5.07348 5.08612 5.24544 5.39006 5.46091 5.56966 5.64756 5.68753 5.85485 5.96405 6.06715 6.12635 6.16866 6.36329 6.39781 6.68829 6.71810 6.87469 6.92953 6.99931 7.05718 7.32860 7.36382 7.44375 7.64672 7.77624 7.97821 8.32796 8.52210 8.66141 9.78305 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.005059 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.060594 B = 5533.790318 C = 6274.765332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.096 4.096 4 C 0.158 3.842 5 H 0.088 0.912 6 C -0.172 4.172 7 N -1.120 6.120 8 S 2.691 3.309 9 O -0.987 6.987 10 O -0.985 6.985 11 C -0.785 4.785 12 C 0.000 4.000 13 C -0.237 4.237 14 C 0.141 3.859 15 C -0.437 4.437 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.765 5.765 19 Si 0.917 3.083 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.183 4.183 24 C -0.014 4.014 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.409 0.591 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.290 0.710 37 H 0.121 0.879 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 8.274 -7.575 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.135 4.135 4 C 0.051 3.949 5 H 0.106 0.894 6 C -0.231 4.231 7 N -0.876 5.876 8 S 2.790 3.210 9 O -0.977 6.977 10 O -0.975 6.975 11 C -0.881 4.881 12 C -0.020 4.020 13 C -0.258 4.258 14 C 0.137 3.863 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.388 5.388 19 Si 0.740 3.260 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.186 1.186 23 C -0.203 4.203 24 C -0.034 4.034 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.947 8.161 -7.119 10.871 hybrid contribution -1.239 -1.019 -0.102 1.608 sum -2.186 7.142 -7.221 10.389 Atomic orbital electron populations 1.23789 0.95984 1.01553 1.01870 1.22917 0.95962 0.98564 0.99100 1.21062 0.97942 0.96114 0.98337 1.20623 0.87844 0.87217 0.99224 0.89367 1.22351 1.01498 0.96279 1.02959 1.55841 1.55665 1.51935 1.24151 1.01278 0.74294 0.72909 0.72523 1.93494 1.61224 1.62621 1.80407 1.93477 1.83082 1.60130 1.60830 1.29116 1.28150 1.09618 1.21191 1.20150 0.92590 0.96956 0.92269 1.21004 1.01925 0.97400 1.05442 1.17831 0.89913 0.90870 0.87671 1.19896 1.04485 0.90951 1.31054 0.89541 1.26134 0.97743 0.98766 0.92324 1.69823 1.26198 1.11717 1.31024 0.86209 0.81295 0.78151 0.80365 1.18393 1.19905 1.18555 1.21323 0.98684 1.00546 0.99777 1.20227 0.95256 0.91625 0.96318 0.88518 0.89057 0.86940 0.90594 0.90702 0.91875 0.90950 0.92435 0.75863 0.87940 0.88302 0.89908 0.86092 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 29.02 0.42 -2.09 16 2 C -0.15 -1.94 9.25 -36.02 -0.33 -2.28 16 3 C -0.10 -1.06 5.26 -27.88 -0.15 -1.20 16 4 C 0.16 2.05 2.76 -67.93 -0.19 1.87 16 5 H 0.09 1.27 7.26 -51.93 -0.38 0.90 16 6 C -0.17 -1.97 9.52 37.16 0.35 -1.61 16 7 N -1.12 -16.07 5.17 -4.89 -0.03 -16.10 16 8 S 2.69 51.44 5.65 -107.50 -0.61 50.83 16 9 O -0.99 -21.30 17.26 -57.17 -0.99 -22.29 16 10 O -0.98 -20.62 16.48 -57.17 -0.94 -21.56 16 11 C -0.78 -17.03 5.85 -39.29 -0.23 -17.26 16 12 C 0.00 0.01 8.89 -39.66 -0.35 -0.34 16 13 C -0.24 -5.54 9.80 -38.87 -0.38 -5.92 16 14 C 0.14 3.54 5.58 -106.82 -0.60 2.94 16 15 C -0.44 -10.65 9.05 -37.74 -0.34 -10.99 16 16 H 0.09 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.07 1.67 5.14 -17.34 -0.09 1.58 16 18 N -0.77 -18.39 10.95 55.55 0.61 -17.78 16 19 Si 0.92 16.99 29.60 -169.99 -5.03 11.95 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 23 C -0.18 -4.54 8.70 -38.87 -0.34 -4.88 16 24 C -0.01 -0.32 9.49 -39.66 -0.38 -0.70 16 25 H 0.10 1.28 8.06 -52.49 -0.42 0.85 16 26 H 0.09 1.01 7.84 -52.48 -0.41 0.60 16 27 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 28 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.41 4.88 8.84 -34.47 -0.30 4.58 16 34 H 0.10 2.03 7.59 -52.49 -0.40 1.63 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 37 H 0.12 3.05 6.15 -52.49 -0.32 2.73 16 38 H 0.10 2.19 7.60 -52.49 -0.40 1.79 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -29.45 335.49 -9.63 -39.08 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -5.10 Total: 11.69 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: -2.60 Total: -40.88 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.58 Total: -33.88 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.93 Total: -43.85 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.61 Total: 50.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.45 -9.63 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223274185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.891 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds