Wall clock time and date at job start Tue Mar 31 2020 07:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00351 * 2 1 4 4 C 1.53001 * 109.47186 * 124.99879 * 3 2 1 5 5 H 1.09003 * 109.47341 * 305.00258 * 4 3 2 6 6 C 1.52998 * 109.46968 * 185.00086 * 4 3 2 7 7 N 1.46502 * 109.47078 * 65.00535 * 4 3 2 8 8 S 1.65595 * 119.99755 * 214.72529 * 7 4 3 9 9 O 1.42107 * 106.40010 * 178.81470 * 8 7 4 10 10 O 1.42097 * 106.40490 * 311.73145 * 8 7 4 11 11 C 1.76196 * 107.22290 * 65.27292 * 8 7 4 12 12 C 1.38630 * 119.74913 * 269.73051 * 11 8 7 13 13 C 1.37623 * 120.25034 * 179.71608 * 12 11 8 14 14 C 1.40720 * 119.73917 * 0.57109 * 13 12 11 15 15 C 1.41392 * 120.24346 * 179.68068 * 14 13 12 16 16 H 1.08000 * 120.00428 * 24.40733 * 15 14 13 17 17 C 1.39947 * 120.00253 * 204.41283 * 15 14 13 18 18 N 1.30831 * 119.99849 * 17.85120 * 17 15 14 19 19 Si 1.86803 * 120.00262 * 197.85655 * 17 15 14 20 20 H 1.48493 * 109.47062 * 59.99496 * 19 17 15 21 21 H 1.48494 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46751 * 299.99844 * 19 17 15 23 23 C 1.40720 * 119.51269 * 359.70437 * 14 13 12 24 24 C 1.37616 * 119.74404 * 359.97438 * 23 14 13 25 25 H 1.07994 * 120.00130 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99832 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.00328 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47000 * 5.00102 * 3 2 1 29 29 H 1.09000 * 109.47493 * 245.00588 * 3 2 1 30 30 H 1.09007 * 109.47330 * 60.00355 * 6 4 3 31 31 H 1.09002 * 109.47499 * 179.97438 * 6 4 3 32 32 H 1.08996 * 109.47871 * 300.00126 * 6 4 3 33 33 H 0.96999 * 119.99652 * 34.99420 * 7 4 3 34 34 H 1.07998 * 119.88004 * 359.97438 * 12 11 8 35 35 H 1.07994 * 120.13238 * 180.27610 * 13 12 11 36 36 H 0.97001 * 119.99764 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.12313 * 179.97438 * 23 14 13 38 38 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4883 1.1468 2.1061 6 6 3.7092 2.7045 1.2552 7 7 4.0547 0.2968 1.0001 8 16 4.6634 -0.5051 2.3149 9 8 5.5967 -1.4509 1.8112 10 8 5.0043 0.4905 3.2697 11 6 3.3417 -1.4354 3.0165 12 6 2.5439 -0.8656 3.9966 13 6 1.5051 -1.5808 4.5475 14 6 1.2619 -2.8995 4.1207 15 6 0.2018 -3.6463 4.6842 16 1 -0.6438 -3.1374 5.1230 17 6 0.2481 -5.0450 4.6736 18 7 1.3855 -5.6602 4.4751 19 14 -1.3139 -6.0334 4.9427 20 1 -2.2998 -5.6991 3.8839 21 1 -0.9984 -7.4833 4.8847 22 1 -1.8854 -5.7035 6.2731 23 6 2.0817 -3.4695 3.1292 24 6 3.1106 -2.7333 2.5876 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 2.9506 3.4755 1.3903 31 1 4.4011 2.7246 2.0973 32 1 4.2560 2.8908 0.3309 33 1 4.3760 0.0833 0.1102 34 1 2.7356 0.1448 4.3263 35 1 0.8821 -1.1335 5.3078 36 1 1.4176 -6.6297 4.4674 37 1 1.9041 -4.4809 2.7945 38 1 3.7409 -3.1686 1.8263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223274185.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:22 Heat of formation + Delta-G solvation = -76.395411 kcal Electronic energy + Delta-G solvation = -21902.333901 eV Core-core repulsion = 18642.328912 eV Total energy + Delta-G solvation = -3260.004989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.38221 -38.49526 -37.94377 -36.75355 -35.79800 -34.40344 -32.05947 -31.29098 -30.94972 -27.61953 -27.40161 -23.28005 -23.03921 -22.41537 -20.60887 -20.44829 -19.42097 -18.70947 -18.10853 -17.27708 -17.03181 -16.11000 -16.01453 -15.79206 -15.16712 -14.99246 -14.76704 -14.16827 -14.15923 -13.97732 -13.87915 -13.52572 -13.14544 -13.06873 -12.97082 -12.96007 -12.87475 -12.83397 -12.55331 -12.27142 -12.02663 -11.87976 -11.80693 -11.53250 -11.33462 -11.19011 -10.42962 -10.04159 -9.77133 -9.53348 -8.86737 -6.64190 -0.26405 0.50444 1.06843 1.34942 1.43786 1.49396 1.49935 2.10684 2.27941 2.55564 2.96387 3.54087 3.63979 3.88310 4.09993 4.20130 4.30799 4.33109 4.48325 4.56696 4.62030 4.83934 4.87467 4.94601 5.00172 5.08065 5.11552 5.17472 5.25113 5.37956 5.46600 5.53247 5.60760 5.77630 5.85409 5.93743 6.00717 6.16504 6.27786 6.50011 6.69213 6.82280 8.08255 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.005059 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.060594 B = 5533.790318 C = 6274.765332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C -0.087 4.087 4 C 0.149 3.851 5 H 0.072 0.928 6 C -0.169 4.169 7 N -1.103 6.103 8 S 2.722 3.278 9 O -1.011 7.011 10 O -0.999 6.999 11 C -0.792 4.792 12 C 0.000 4.000 13 C -0.254 4.254 14 C 0.113 3.887 15 C -0.467 4.467 16 H 0.092 0.908 17 C 0.035 3.965 18 N -0.801 5.801 19 Si 0.991 3.009 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.255 1.255 23 C -0.206 4.206 24 C -0.019 4.019 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.423 0.577 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.298 0.702 37 H 0.108 0.892 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.583 9.799 -8.454 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.179 4.179 3 C -0.125 4.125 4 C 0.043 3.957 5 H 0.090 0.910 6 C -0.228 4.228 7 N -0.864 5.864 8 S 2.817 3.183 9 O -1.001 7.001 10 O -0.989 6.989 11 C -0.884 4.884 12 C -0.020 4.020 13 C -0.274 4.274 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.424 5.424 19 Si 0.810 3.190 20 H -0.180 1.180 21 H -0.190 1.190 22 H -0.178 1.178 23 C -0.226 4.226 24 C -0.039 4.039 25 H 0.102 0.898 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.259 0.741 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.623 9.674 -7.989 12.651 hybrid contribution -0.951 -1.388 0.102 1.685 sum -2.574 8.287 -7.888 11.726 Atomic orbital electron populations 1.23926 0.96083 1.02091 1.01527 1.23019 0.96273 0.99056 0.99514 1.21055 0.97769 0.95420 0.98281 1.20882 0.87797 0.87428 0.99611 0.90983 1.22331 1.01829 0.95594 1.03079 1.55395 1.55986 1.51490 1.23563 1.00383 0.73056 0.72182 0.72703 1.93457 1.62011 1.63863 1.80810 1.93460 1.83060 1.60118 1.62267 1.29604 1.28240 1.09560 1.21037 1.20421 0.91970 0.97767 0.91835 1.21230 1.02883 0.97208 1.06102 1.18173 0.90628 0.91960 0.88252 1.20192 1.04818 0.92156 1.32246 0.88996 1.27025 1.00859 0.99244 0.91338 1.69868 1.28297 1.12482 1.31705 0.85106 0.76818 0.76677 0.80404 1.17985 1.19002 1.17844 1.21323 1.00071 1.00434 1.00812 1.20400 0.94898 0.92268 0.96371 0.89831 0.86805 0.89025 0.88233 0.88480 0.89504 0.93063 0.90531 0.74062 0.85785 0.87177 0.89125 0.87393 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.89 14.32 67.79 0.97 -3.92 16 2 C -0.16 -4.02 9.25 25.65 0.24 -3.78 16 3 C -0.09 -1.63 5.26 29.85 0.16 -1.47 16 4 C 0.15 3.50 2.76 44.99 0.12 3.63 16 5 H 0.07 1.95 7.26 -2.39 -0.02 1.93 16 6 C -0.17 -3.32 9.52 71.98 0.69 -2.63 16 7 N -1.10 -29.62 5.17 -169.38 -0.88 -30.49 16 8 S 2.72 101.58 5.65 -56.49 -0.32 101.26 16 9 O -1.01 -42.96 17.26 -128.00 -2.21 -45.17 16 10 O -1.00 -40.61 16.48 -128.00 -2.11 -42.71 16 11 C -0.79 -34.45 5.85 22.46 0.13 -34.32 16 12 C 0.00 -0.01 8.89 22.22 0.20 0.19 16 13 C -0.25 -12.07 9.80 22.73 0.22 -11.85 16 14 C 0.11 5.88 5.58 -21.29 -0.12 5.76 16 15 C -0.47 -23.39 9.05 23.46 0.21 -23.18 16 16 H 0.09 4.32 7.91 -2.91 -0.02 4.29 16 17 C 0.03 1.61 5.14 85.26 0.44 2.05 16 18 N -0.80 -39.51 10.95 21.83 0.24 -39.27 16 19 Si 0.99 34.76 29.60 68.60 2.03 36.79 16 20 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 21 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 22 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 23 C -0.21 -10.64 8.70 22.73 0.20 -10.44 16 24 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 25 H 0.08 2.22 8.06 -2.91 -0.02 2.20 16 26 H 0.11 2.23 7.84 -2.91 -0.02 2.21 16 27 H 0.09 2.65 8.03 -2.91 -0.02 2.63 16 28 H 0.10 1.47 7.79 -2.39 -0.02 1.45 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.29 16 31 H 0.05 1.24 7.61 -2.39 -0.02 1.22 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.42 9.14 8.84 -96.75 -0.85 8.29 16 34 H 0.12 4.81 7.59 -2.91 -0.02 4.79 16 35 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 37 H 0.11 5.74 6.15 -2.91 -0.02 5.72 16 38 H 0.11 4.88 7.60 -2.91 -0.02 4.86 16 Total: -1.00 -64.33 335.49 0.63 -63.70 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.21 Total: 36.57 kcal Atomic # 6 Polarization: -84.34 SS G_CDS: 3.67 Total: -80.68 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.64 Total: -69.76 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -4.32 Total: -87.88 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Atomic # 16 Polarization: 101.58 SS G_CDS: -0.32 Total: 101.26 kcal Total: -64.33 0.63 -63.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223274185.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.696 kcal (2) G-P(sol) polarization free energy of solvation -64.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds