Wall clock time and date at job start Tue Mar 31 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99937 * 2 1 4 4 C 1.50701 * 120.00209 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46890 * 94.99617 * 4 2 1 6 6 C 1.46499 * 119.99160 * 85.00191 * 5 4 2 7 7 S 1.65593 * 120.00295 * 265.00410 * 5 4 2 8 8 O 1.42100 * 106.40539 * 23.54294 * 7 5 4 9 9 O 1.42105 * 106.39784 * 156.46140 * 7 5 4 10 10 C 1.76193 * 107.21758 * 269.99915 * 7 5 4 11 11 C 1.38637 * 119.75130 * 269.72579 * 10 7 5 12 12 C 1.37624 * 120.24941 * 179.72077 * 11 10 7 13 13 C 1.40712 * 119.74058 * 0.57655 * 12 11 10 14 14 C 1.41403 * 120.24203 * 179.68509 * 13 12 11 15 15 H 1.08002 * 119.99753 * 204.40696 * 14 13 12 16 16 C 1.39938 * 119.99981 * 24.39886 * 14 13 12 17 17 N 1.30822 * 120.00057 * 17.85583 * 16 14 13 18 18 Si 1.86802 * 119.99830 * 197.85063 * 16 14 13 19 19 H 1.48500 * 109.47131 * 90.00595 * 18 16 14 20 20 H 1.48507 * 109.47087 * 210.00009 * 18 16 14 21 21 H 1.48495 * 109.47536 * 330.00304 * 18 16 14 22 22 C 1.40711 * 119.51483 * 359.69955 * 13 12 11 23 23 C 1.37620 * 119.74720 * 0.02562 * 22 13 12 24 24 H 1.07990 * 120.00119 * 180.02562 * 1 2 3 25 25 H 1.08007 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47357 * 269.99786 * 3 2 1 27 27 H 1.09003 * 109.47325 * 30.00105 * 3 2 1 28 28 H 1.09001 * 109.47214 * 150.00011 * 3 2 1 29 29 H 1.09001 * 109.46665 * 335.00762 * 4 2 1 30 30 H 1.08996 * 109.47449 * 215.00052 * 4 2 1 31 31 H 1.08994 * 109.47804 * 269.99531 * 6 5 4 32 32 H 1.08996 * 109.47760 * 30.00387 * 6 5 4 33 33 H 1.09008 * 109.46769 * 149.99782 * 6 5 4 34 34 H 1.07998 * 119.87278 * 359.97438 * 11 10 7 35 35 H 1.07997 * 120.12724 * 180.28216 * 12 11 10 36 36 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.12977 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.87717 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3753 6 6 3.6272 -1.1285 -1.9900 7 16 1.4321 -2.6892 -2.2355 8 8 0.1415 -2.5965 -1.6481 9 8 1.6819 -2.4225 -3.6088 10 6 1.9982 -4.3307 -1.9364 11 6 2.9568 -4.8899 -2.7673 12 6 3.4105 -6.1691 -2.5397 13 6 2.8887 -6.9141 -1.4661 14 6 3.3424 -8.2318 -1.2265 15 1 2.7127 -8.9319 -0.6975 16 6 4.6071 -8.6287 -1.6751 17 7 5.5005 -7.7279 -1.9939 18 14 5.0196 -10.4450 -1.8184 19 1 4.6605 -10.9286 -3.1757 20 1 6.4741 -10.6416 -1.5917 21 1 4.2526 -11.2086 -0.8018 22 6 1.9119 -6.3384 -0.6328 23 6 1.4771 -5.0555 -0.8757 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6198 -1.0277 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4385 -2.0852 0.4351 30 1 2.9742 -1.1986 0.5900 31 1 3.3945 -0.1887 -2.4906 32 1 4.3775 -0.9535 -1.2190 33 1 4.0139 -1.8418 -2.7179 34 1 3.3519 -4.3180 -3.5938 35 1 4.1606 -6.6012 -3.1855 36 1 6.3773 -8.0031 -2.3045 37 1 1.5043 -6.9014 0.1939 38 1 0.7272 -4.6117 -0.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226504597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:53 Heat of formation + Delta-G solvation = -46.605919 kcal Electronic energy + Delta-G solvation = -21708.307146 eV Core-core repulsion = 18449.593926 eV Total energy + Delta-G solvation = -3258.713220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -37.57779 -37.24829 -36.47114 -35.07948 -34.05058 -33.71697 -30.25944 -29.48018 -27.88970 -26.80259 -25.82237 -24.35889 -21.48582 -21.13854 -18.89140 -18.07743 -17.63533 -17.08452 -16.56512 -15.72374 -15.49842 -14.86724 -14.24820 -14.14431 -13.91592 -13.42281 -13.30980 -13.17576 -12.99224 -12.50595 -12.38241 -12.20580 -11.85437 -11.77566 -11.60391 -11.44149 -11.30321 -11.26454 -11.21082 -11.11103 -10.92398 -10.87699 -10.39492 -9.76373 -9.60408 -9.52070 -9.05812 -8.64118 -7.96005 -7.71237 -7.15396 -4.80959 1.20558 2.24087 2.34394 2.87276 2.90035 2.92136 2.93034 3.65629 3.72458 4.24163 4.57939 4.90662 4.95983 5.05530 5.23267 5.39362 5.53446 5.61817 5.67249 5.73259 5.82121 5.91803 6.00058 6.04557 6.11077 6.12797 6.25173 6.65928 6.67877 6.75655 6.83280 6.99111 7.01383 7.05089 7.33154 7.41635 7.62633 7.76278 7.95943 8.31094 8.50480 8.64249 9.76131 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029951 B = 0.003983 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.627637 B = 7027.335462 C = 7107.505526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.160 4.160 3 C -0.113 4.113 4 C 0.164 3.836 5 N -1.003 6.003 6 C 0.100 3.900 7 S 2.691 3.309 8 O -0.979 6.979 9 O -0.983 6.983 10 C -0.788 4.788 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.139 3.861 14 C -0.436 4.436 15 H 0.088 0.912 16 C 0.073 3.927 17 N -0.766 5.766 18 Si 0.918 3.082 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.239 4.239 23 C 0.001 3.999 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.289 0.711 37 H 0.100 0.900 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.403 9.419 3.392 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.169 4.169 4 C 0.038 3.962 5 N -0.837 5.837 6 C -0.046 4.046 7 S 2.791 3.209 8 O -0.970 6.970 9 O -0.973 6.973 10 C -0.883 4.883 11 C -0.037 4.037 12 C -0.203 4.203 13 C 0.135 3.865 14 C -0.463 4.463 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.389 5.389 18 Si 0.741 3.259 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.259 4.259 23 C -0.019 4.019 24 H 0.134 0.866 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.804 9.782 2.786 10.203 hybrid contribution 0.840 -1.265 0.240 1.537 sum 0.036 8.518 3.027 9.039 Atomic orbital electron populations 1.24029 0.95478 1.02680 0.98776 1.22131 0.95808 0.96220 1.02056 1.20804 0.99863 0.94489 1.01790 1.20202 0.99371 0.93935 0.82654 1.57717 1.38719 1.62885 1.24398 1.21359 0.86188 0.99021 0.97993 1.01438 0.73018 0.73846 0.72645 1.93452 1.37425 1.87519 1.78607 1.93473 1.85852 1.85691 1.32313 1.29274 1.22283 1.22426 1.14357 1.20259 0.92656 0.95749 0.95047 1.21338 1.04140 0.94906 0.99895 1.17852 0.88256 0.92036 0.88311 1.19958 0.99844 0.96879 1.29653 0.89407 1.26131 0.95824 1.00837 0.92171 1.69819 1.04697 1.36280 1.28069 0.86138 0.78415 0.81100 0.80256 1.18776 1.19866 1.18184 1.21053 1.06137 0.96064 1.02665 1.20159 0.94306 0.94448 0.93025 0.86646 0.88862 0.91812 0.92256 0.92079 0.89550 0.90270 0.93231 0.91481 0.91042 0.87996 0.85967 0.89991 0.88184 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 13.50 29.01 0.39 -1.88 16 2 C -0.16 -2.07 5.63 -101.07 -0.57 -2.64 16 3 C -0.11 -1.15 10.03 36.01 0.36 -0.79 16 4 C 0.16 2.27 5.52 -5.19 -0.03 2.25 16 5 N -1.00 -15.99 3.17 -123.05 -0.39 -16.38 16 6 C 0.10 1.37 10.33 59.85 0.62 1.98 16 7 S 2.69 53.21 5.59 -107.50 -0.60 52.60 16 8 O -0.98 -20.25 14.76 -57.17 -0.84 -21.10 16 9 O -0.98 -21.56 16.32 -57.17 -0.93 -22.50 16 10 C -0.79 -17.53 6.00 -39.29 -0.24 -17.77 16 11 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 12 C -0.18 -4.58 8.70 -38.87 -0.34 -4.92 16 13 C 0.14 3.53 5.57 -106.82 -0.60 2.94 16 14 C -0.44 -10.69 9.05 -37.74 -0.34 -11.03 16 15 H 0.09 2.04 7.91 -52.49 -0.41 1.62 16 16 C 0.07 1.66 5.14 -17.35 -0.09 1.57 16 17 N -0.77 -18.10 10.95 55.55 0.61 -17.49 16 18 Si 0.92 16.97 29.59 -169.99 -5.03 11.93 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.31 16 22 C -0.24 -5.64 9.80 -38.87 -0.38 -6.02 16 23 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 24 H 0.12 1.72 6.92 -52.49 -0.36 1.36 16 25 H 0.09 1.05 8.04 -52.48 -0.42 0.62 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.09 1.24 7.45 -51.93 -0.39 0.85 16 30 H 0.08 0.93 7.92 -51.93 -0.41 0.51 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.75 7.94 -51.93 -0.41 0.33 16 33 H 0.07 1.03 7.79 -51.92 -0.40 0.62 16 34 H 0.10 2.21 7.59 -52.49 -0.40 1.82 16 35 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 36 H 0.29 6.10 8.30 -40.82 -0.34 5.77 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -28.99 334.06 -9.29 -38.29 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.18 Total: 7.06 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: -1.96 Total: -37.45 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.22 Total: -33.87 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.78 Total: -43.59 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 53.21 SS G_CDS: -0.60 Total: 52.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.99 -9.29 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226504597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.319 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds