Wall clock time and date at job start Tue Mar 31 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99937 * 2 1 4 4 C 1.50701 * 120.00209 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46890 * 94.99617 * 4 2 1 6 6 C 1.46499 * 119.99160 * 85.00191 * 5 4 2 7 7 S 1.65593 * 120.00295 * 265.00410 * 5 4 2 8 8 O 1.42100 * 106.40539 * 23.54294 * 7 5 4 9 9 O 1.42105 * 106.39784 * 156.46140 * 7 5 4 10 10 C 1.76193 * 107.21758 * 269.99915 * 7 5 4 11 11 C 1.38637 * 119.75130 * 269.72579 * 10 7 5 12 12 C 1.37624 * 120.24941 * 179.72077 * 11 10 7 13 13 C 1.40712 * 119.74058 * 0.57655 * 12 11 10 14 14 C 1.41403 * 120.24203 * 179.68509 * 13 12 11 15 15 H 1.08002 * 119.99753 * 204.40696 * 14 13 12 16 16 C 1.39938 * 119.99981 * 24.39886 * 14 13 12 17 17 N 1.30822 * 120.00057 * 17.85583 * 16 14 13 18 18 Si 1.86802 * 119.99830 * 197.85063 * 16 14 13 19 19 H 1.48500 * 109.47131 * 90.00595 * 18 16 14 20 20 H 1.48507 * 109.47087 * 210.00009 * 18 16 14 21 21 H 1.48495 * 109.47536 * 330.00304 * 18 16 14 22 22 C 1.40711 * 119.51483 * 359.69955 * 13 12 11 23 23 C 1.37620 * 119.74720 * 0.02562 * 22 13 12 24 24 H 1.07990 * 120.00119 * 180.02562 * 1 2 3 25 25 H 1.08007 * 119.99853 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47357 * 269.99786 * 3 2 1 27 27 H 1.09003 * 109.47325 * 30.00105 * 3 2 1 28 28 H 1.09001 * 109.47214 * 150.00011 * 3 2 1 29 29 H 1.09001 * 109.46665 * 335.00762 * 4 2 1 30 30 H 1.08996 * 109.47449 * 215.00052 * 4 2 1 31 31 H 1.08994 * 109.47804 * 269.99531 * 6 5 4 32 32 H 1.08996 * 109.47760 * 30.00387 * 6 5 4 33 33 H 1.09008 * 109.46769 * 149.99782 * 6 5 4 34 34 H 1.07998 * 119.87278 * 359.97438 * 11 10 7 35 35 H 1.07997 * 120.12724 * 180.28216 * 12 11 10 36 36 H 0.97005 * 119.99724 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.12977 * 179.97438 * 22 13 12 38 38 H 1.08000 * 119.87717 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3753 6 6 3.6272 -1.1285 -1.9900 7 16 1.4321 -2.6892 -2.2355 8 8 0.1415 -2.5965 -1.6481 9 8 1.6819 -2.4225 -3.6088 10 6 1.9982 -4.3307 -1.9364 11 6 2.9568 -4.8899 -2.7673 12 6 3.4105 -6.1691 -2.5397 13 6 2.8887 -6.9141 -1.4661 14 6 3.3424 -8.2318 -1.2265 15 1 2.7127 -8.9319 -0.6975 16 6 4.6071 -8.6287 -1.6751 17 7 5.5005 -7.7279 -1.9939 18 14 5.0196 -10.4450 -1.8184 19 1 4.6605 -10.9286 -3.1757 20 1 6.4741 -10.6416 -1.5917 21 1 4.2526 -11.2086 -0.8018 22 6 1.9119 -6.3384 -0.6328 23 6 1.4771 -5.0555 -0.8757 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6198 -1.0277 27 1 1.4744 2.0648 0.5139 28 1 3.0159 1.1748 0.5138 29 1 1.4385 -2.0852 0.4351 30 1 2.9742 -1.1986 0.5900 31 1 3.3945 -0.1887 -2.4906 32 1 4.3775 -0.9535 -1.2190 33 1 4.0139 -1.8418 -2.7179 34 1 3.3519 -4.3180 -3.5938 35 1 4.1606 -6.6012 -3.1855 36 1 6.3773 -8.0031 -2.3045 37 1 1.5043 -6.9014 0.1939 38 1 0.7272 -4.6117 -0.2377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226504597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:53 Heat of formation + Delta-G solvation = -63.339703 kcal Electronic energy + Delta-G solvation = -21709.032777 eV Core-core repulsion = 18449.593926 eV Total energy + Delta-G solvation = -3259.438851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.39247 -38.44093 -38.04457 -36.74523 -35.81460 -34.80720 -32.07468 -31.31211 -28.87123 -27.75942 -27.62377 -25.55192 -23.28388 -22.96055 -20.19558 -19.44136 -19.35232 -18.53274 -18.19185 -17.23738 -17.03817 -15.99382 -15.82482 -15.70333 -15.11380 -15.04737 -14.85569 -14.35473 -14.09792 -13.98384 -13.83995 -13.71659 -13.56607 -13.14102 -13.06361 -12.91937 -12.89806 -12.73915 -12.60586 -12.37201 -12.32681 -12.02115 -11.96594 -11.56472 -11.32439 -11.24225 -10.09098 -9.91208 -9.75032 -9.56898 -8.88217 -6.65995 -0.35069 0.47216 1.03788 1.29140 1.35694 1.43913 1.50615 2.11120 2.26447 2.53848 2.96636 3.50940 3.53481 3.83579 3.98698 4.20760 4.27648 4.29996 4.54989 4.67420 4.74049 4.81040 4.85201 4.90844 4.93484 4.96267 5.08374 5.08683 5.12489 5.21717 5.22796 5.50351 5.57501 5.66056 5.75800 5.80363 5.92439 6.02329 6.13976 6.47630 6.67038 6.79600 8.07035 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.029951 B = 0.003983 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.627637 B = 7027.335462 C = 7107.505526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.111 4.111 4 C 0.152 3.848 5 N -0.996 5.996 6 C 0.089 3.911 7 S 2.715 3.285 8 O -0.989 6.989 9 O -1.004 7.004 10 C -0.798 4.798 11 C -0.023 4.023 12 C -0.207 4.207 13 C 0.111 3.889 14 C -0.467 4.467 15 H 0.092 0.908 16 C 0.035 3.965 17 N -0.795 5.795 18 Si 0.992 3.008 19 H -0.261 1.261 20 H -0.263 1.263 21 H -0.254 1.254 22 C -0.257 4.257 23 C -0.002 4.002 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.299 0.701 37 H 0.112 0.888 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 10.423 4.124 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.162 4.162 3 C -0.168 4.168 4 C 0.028 3.972 5 N -0.834 5.834 6 C -0.056 4.056 7 S 2.812 3.188 8 O -0.979 6.979 9 O -0.995 6.995 10 C -0.891 4.891 11 C -0.043 4.043 12 C -0.227 4.227 13 C 0.107 3.893 14 C -0.493 4.493 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.418 5.418 18 Si 0.811 3.189 19 H -0.186 1.186 20 H -0.187 1.187 21 H -0.177 1.177 22 C -0.277 4.277 23 C -0.022 4.022 24 H 0.111 0.889 25 H 0.131 0.869 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.184 10.766 3.524 11.329 hybrid contribution 0.629 -1.419 0.042 1.553 sum 0.446 9.347 3.566 10.014 Atomic orbital electron populations 1.24101 0.95938 1.02684 0.99568 1.22299 0.95760 0.96882 1.01283 1.20838 1.00443 0.93136 1.02334 1.20495 1.00811 0.94398 0.81512 1.57409 1.39163 1.61621 1.25188 1.21642 0.85811 0.99202 0.98901 1.00716 0.72861 0.73053 0.72192 1.93439 1.38413 1.87411 1.78685 1.93440 1.86246 1.85689 1.34133 1.29770 1.21188 1.24559 1.13591 1.20452 0.92898 0.95378 0.95556 1.21356 1.05004 0.95894 1.00456 1.18201 0.89235 0.92919 0.88917 1.20246 1.01004 0.97010 1.31086 0.89032 1.26997 0.95010 1.05318 0.91101 1.69844 1.05373 1.38461 1.28107 0.85046 0.78599 0.75124 0.80146 1.18568 1.18668 1.17691 1.21291 1.06427 0.96884 1.03126 1.20451 0.94392 0.94050 0.93257 0.88857 0.86856 0.91601 0.90874 0.90573 0.90471 0.87520 0.91579 0.88445 0.92213 0.86956 0.87088 0.88997 0.86983 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.60 13.50 67.78 0.91 -3.69 16 2 C -0.16 -3.74 5.63 -16.49 -0.09 -3.83 16 3 C -0.11 -1.88 10.03 71.24 0.71 -1.16 16 4 C 0.15 3.89 5.52 85.63 0.47 4.36 16 5 N -1.00 -29.96 3.17 -543.22 -1.72 -31.68 16 6 C 0.09 2.22 10.33 127.77 1.32 3.54 16 7 S 2.72 105.44 5.59 -56.49 -0.32 105.12 16 8 O -0.99 -40.26 14.76 -128.00 -1.89 -42.15 16 9 O -1.00 -43.54 16.32 -128.00 -2.09 -45.63 16 10 C -0.80 -35.66 6.00 22.46 0.13 -35.52 16 11 C -0.02 -1.09 9.49 22.22 0.21 -0.88 16 12 C -0.21 -10.75 8.70 22.73 0.20 -10.55 16 13 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 14 C -0.47 -23.41 9.05 23.46 0.21 -23.20 16 15 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 16 C 0.04 1.63 5.14 85.25 0.44 2.07 16 17 N -0.80 -38.12 10.95 21.82 0.24 -37.88 16 18 Si 0.99 34.47 29.59 68.60 2.03 36.50 16 19 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 20 H -0.26 -8.57 7.11 99.48 0.71 -7.87 16 21 H -0.25 -8.54 7.11 99.48 0.71 -7.84 16 22 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 23 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 24 H 0.09 2.74 6.92 -2.92 -0.02 2.72 16 25 H 0.11 2.30 8.04 -2.91 -0.02 2.28 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 28 H 0.08 1.06 8.08 -2.39 -0.02 1.05 16 29 H 0.08 2.11 7.45 -2.39 -0.02 2.09 16 30 H 0.11 2.14 7.92 -2.39 -0.02 2.12 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 1.83 7.94 -2.39 -0.02 1.81 16 33 H 0.06 1.64 7.79 -2.38 -0.02 1.62 16 34 H 0.11 4.98 7.59 -2.91 -0.02 4.96 16 35 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 36 H 0.30 12.68 8.30 -92.70 -0.77 11.92 16 37 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -62.89 334.06 2.14 -60.75 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 1.05 Total: 30.18 kcal Atomic # 6 Polarization: -80.05 SS G_CDS: 4.84 Total: -75.21 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -1.48 Total: -69.56 kcal Atomic # 8 Polarization: -83.80 SS G_CDS: -3.98 Total: -87.78 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 105.44 SS G_CDS: -0.32 Total: 105.12 kcal Total: -62.89 2.14 -60.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226504597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.590 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds