Wall clock time and date at job start Tue Mar 31 2020 06:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50698 * 120.00313 * 2 1 4 4 C 1.31005 * 119.99715 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00030 * 3.84567 * 4 2 1 6 6 N 1.46498 * 109.47070 * 123.64249 * 5 4 2 7 7 S 1.65599 * 120.00146 * 164.72140 * 6 5 4 8 8 O 1.42094 * 106.40141 * 178.53709 * 7 6 5 9 9 O 1.42096 * 106.40006 * 311.46076 * 7 6 5 10 10 C 1.76197 * 107.21411 * 65.00144 * 7 6 5 11 11 C 1.38639 * 119.74739 * 269.72810 * 10 7 6 12 12 C 1.37621 * 120.24829 * 179.72336 * 11 10 7 13 13 C 1.40720 * 119.74034 * 0.57041 * 12 11 10 14 14 C 1.41398 * 120.23967 * 179.67961 * 13 12 11 15 15 H 1.08002 * 119.99793 * 154.06562 * 14 13 12 16 16 C 1.39943 * 120.00490 * 334.06605 * 14 13 12 17 17 N 1.30825 * 119.99744 * 342.03090 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 162.03154 * 16 14 13 19 19 H 1.48504 * 109.47004 * 94.96799 * 18 16 14 20 20 H 1.48502 * 109.47479 * 214.96525 * 18 16 14 21 21 H 1.48501 * 109.47345 * 334.96930 * 18 16 14 22 22 C 1.40717 * 119.51512 * 359.70227 * 13 12 11 23 23 C 1.37613 * 119.74423 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47459 * 237.20800 * 1 2 3 25 25 H 1.09002 * 109.46755 * 357.21470 * 1 2 3 26 26 H 1.09002 * 109.47316 * 117.20636 * 1 2 3 27 27 H 1.08994 * 109.47515 * 239.99931 * 3 2 1 28 28 H 1.09010 * 109.46885 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47341 * 119.99678 * 3 2 1 30 30 H 1.08001 * 119.99597 * 183.84682 * 4 2 1 31 31 H 1.08991 * 109.47109 * 3.64142 * 5 4 2 32 32 H 1.09003 * 109.46707 * 243.63966 * 5 4 2 33 33 H 0.97007 * 120.00010 * 345.00046 * 6 5 4 34 34 H 1.08003 * 119.87782 * 359.97438 * 11 10 7 35 35 H 1.07995 * 120.13072 * 180.27098 * 12 11 10 36 36 H 0.97001 * 120.00158 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.12257 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.87516 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1346 0.0005 5 6 1.4109 -2.4382 -0.0864 6 7 1.8963 -3.2056 -1.2361 7 16 1.5373 -4.8169 -1.3672 8 8 2.1132 -5.2582 -2.5890 9 8 1.8439 -5.4000 -0.1082 10 6 -0.2087 -4.9478 -1.5643 11 6 -1.0197 -5.0729 -0.4468 12 6 -2.3851 -5.1702 -0.5885 13 6 -2.9563 -5.1543 -1.8745 14 6 -4.3574 -5.2604 -2.0326 15 1 -4.8349 -4.8459 -2.9082 16 6 -5.1255 -5.9024 -1.0547 17 7 -4.5510 -6.6989 -0.1903 18 14 -6.9709 -5.6221 -0.9834 19 1 -7.6647 -6.7008 -1.7320 20 1 -7.4193 -5.6348 0.4322 21 1 -7.2960 -4.3080 -1.5939 22 6 -2.1230 -5.0327 -3.0018 23 6 -0.7607 -4.9311 -2.8360 24 1 -0.3634 -0.5565 0.8638 25 1 -0.3633 1.0265 0.0499 26 1 -0.3634 -0.4698 -0.9140 27 1 2.8872 1.3628 -0.8899 28 1 1.5522 2.1336 0.0005 29 1 2.8872 1.3628 0.8900 30 1 3.2401 -1.1356 0.0633 31 1 0.3466 -2.2370 -0.2071 32 1 1.5711 -3.0114 0.8268 33 1 2.4314 -2.7709 -1.9185 34 1 -0.5785 -5.0900 0.5389 35 1 -3.0154 -5.2631 0.2835 36 1 -5.0832 -7.1436 0.4878 37 1 -2.5509 -5.0199 -3.9933 38 1 -0.1191 -4.8381 -3.6997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232623869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:15 Heat of formation + Delta-G solvation = -61.326626 kcal Electronic energy + Delta-G solvation = -21255.794574 eV Core-core repulsion = 17996.443016 eV Total energy + Delta-G solvation = -3259.351558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.58338 -37.31997 -36.42896 -35.10264 -34.04772 -33.94739 -30.25502 -29.47530 -28.48831 -27.66979 -25.80790 -23.66429 -21.51335 -21.12866 -18.98601 -18.04055 -17.60689 -16.99557 -16.45981 -15.95764 -15.49818 -14.92963 -14.45169 -14.12439 -14.06322 -13.61412 -13.37160 -13.20772 -12.84594 -12.49747 -12.43552 -12.19470 -12.08453 -11.82105 -11.74631 -11.44857 -11.37062 -11.34214 -11.27645 -11.21299 -10.86469 -10.82741 -10.44334 -9.75225 -9.65398 -9.49362 -9.13646 -8.71929 -7.94712 -7.70656 -7.14041 -4.79686 1.23726 2.09027 2.26099 2.87291 2.89166 2.91934 2.95668 3.66440 3.84351 4.26060 4.54361 4.70298 4.85323 5.18582 5.22355 5.36782 5.42516 5.45298 5.49099 5.72219 5.75029 5.77525 5.94926 6.03720 6.07849 6.11547 6.24584 6.58940 6.68185 6.71753 6.79545 6.90774 7.04843 7.32923 7.37230 7.42744 7.62654 7.76515 7.97339 8.31685 8.51298 8.64741 9.78513 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.004572 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.088630 B = 6122.864828 C = 7279.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C -0.118 4.118 4 C -0.176 4.176 5 C 0.147 3.853 6 N -1.123 6.123 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.984 6.984 10 C -0.787 4.787 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.141 3.859 14 C -0.439 4.439 15 H 0.087 0.913 16 C 0.073 3.927 17 N -0.765 5.765 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.257 1.257 22 C -0.239 4.239 23 C 0.003 3.997 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.289 0.711 37 H 0.100 0.900 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.454 11.393 1.758 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.117 4.117 3 C -0.174 4.174 4 C -0.196 4.196 5 C 0.022 3.978 6 N -0.879 5.879 7 S 2.793 3.207 8 O -0.977 6.977 9 O -0.975 6.975 10 C -0.883 4.883 11 C -0.037 4.037 12 C -0.202 4.202 13 C 0.138 3.862 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.388 5.388 18 Si 0.738 3.262 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.180 1.180 22 C -0.259 4.259 23 C -0.017 4.017 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.242 0.758 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.957 10.441 2.160 12.214 hybrid contribution -1.288 0.390 -0.257 1.370 sum 4.670 10.831 1.903 11.948 Atomic orbital electron populations 1.20980 0.91958 1.02358 1.03028 1.21723 0.96125 0.94880 0.98976 1.20870 0.99869 0.94721 1.01967 1.22641 0.99728 0.93253 1.03976 1.20257 0.97967 0.90934 0.88689 1.55716 1.68822 1.30313 1.33013 1.01180 0.75074 0.71761 0.72711 1.93487 1.78458 1.79400 1.46373 1.93481 1.84797 1.75096 1.44091 1.29150 1.21860 1.37167 1.00077 1.20265 0.94186 0.94165 0.95065 1.21291 0.93318 1.07918 0.97714 1.17844 0.92939 0.84086 0.91362 1.19921 0.92046 1.29639 1.04977 0.89470 1.26123 1.02361 0.92628 0.93800 1.69827 1.39335 1.17119 1.12493 0.86166 0.80717 0.80371 0.78900 1.19125 1.19586 1.18016 1.21031 0.92842 1.14568 0.97484 1.20165 0.95219 0.92584 0.93768 0.91056 0.92144 0.90679 0.91564 0.91948 0.91667 0.86912 0.90703 0.90072 0.75796 0.87869 0.86254 0.89956 0.88206 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.54 36.00 0.31 -1.03 16 2 C -0.12 -1.21 6.05 -101.07 -0.61 -1.82 16 3 C -0.12 -0.96 10.05 36.00 0.36 -0.60 16 4 C -0.18 -2.02 9.29 -36.03 -0.33 -2.35 16 5 C 0.15 2.04 6.45 -5.19 -0.03 2.00 16 6 N -1.12 -16.83 5.99 -11.66 -0.07 -16.90 16 7 S 2.69 52.24 5.73 -107.50 -0.62 51.62 16 8 O -0.99 -21.11 17.26 -57.17 -0.99 -22.10 16 9 O -0.98 -21.35 16.72 -57.17 -0.96 -22.31 16 10 C -0.79 -17.27 5.97 -39.29 -0.23 -17.50 16 11 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 12 C -0.18 -4.50 8.69 -38.87 -0.34 -4.84 16 13 C 0.14 3.56 5.56 -106.82 -0.59 2.96 16 14 C -0.44 -10.70 9.05 -37.74 -0.34 -11.04 16 15 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.68 5.12 -17.34 -0.09 1.59 16 17 N -0.77 -18.35 11.07 55.55 0.61 -17.74 16 18 Si 0.92 16.90 29.60 -169.99 -5.03 11.87 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.27 -4.90 7.11 56.52 0.40 -4.49 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 22 C -0.24 -5.64 9.80 -38.87 -0.38 -6.02 16 23 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 24 H 0.07 0.76 7.85 -51.93 -0.41 0.35 16 25 H 0.06 0.54 7.70 -51.93 -0.40 0.14 16 26 H 0.07 0.87 7.66 -51.93 -0.40 0.47 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 7.70 -51.92 -0.40 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.16 8.05 -52.49 -0.42 0.74 16 31 H 0.07 1.05 5.82 -51.93 -0.30 0.75 16 32 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 33 H 0.41 5.21 8.65 -34.47 -0.30 4.91 16 34 H 0.10 2.19 7.59 -52.48 -0.40 1.79 16 35 H 0.12 2.98 6.28 -52.49 -0.33 2.65 16 36 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -29.80 334.41 -10.02 -39.81 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.97 Total: 10.42 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: -3.04 Total: -39.72 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.54 Total: -34.64 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.94 Total: -44.41 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.62 Total: 51.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.80 -10.02 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232623869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.512 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds