Wall clock time and date at job start Tue Mar 31 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50698 * 120.00313 * 2 1 4 4 C 1.31005 * 119.99715 * 179.97438 * 2 1 3 5 5 C 1.50701 * 120.00030 * 3.84567 * 4 2 1 6 6 N 1.46498 * 109.47070 * 123.64249 * 5 4 2 7 7 S 1.65599 * 120.00146 * 164.72140 * 6 5 4 8 8 O 1.42094 * 106.40141 * 178.53709 * 7 6 5 9 9 O 1.42096 * 106.40006 * 311.46076 * 7 6 5 10 10 C 1.76197 * 107.21411 * 65.00144 * 7 6 5 11 11 C 1.38639 * 119.74739 * 269.72810 * 10 7 6 12 12 C 1.37621 * 120.24829 * 179.72336 * 11 10 7 13 13 C 1.40720 * 119.74034 * 0.57041 * 12 11 10 14 14 C 1.41398 * 120.23967 * 179.67961 * 13 12 11 15 15 H 1.08002 * 119.99793 * 154.06562 * 14 13 12 16 16 C 1.39943 * 120.00490 * 334.06605 * 14 13 12 17 17 N 1.30825 * 119.99744 * 342.03090 * 16 14 13 18 18 Si 1.86796 * 120.00166 * 162.03154 * 16 14 13 19 19 H 1.48504 * 109.47004 * 94.96799 * 18 16 14 20 20 H 1.48502 * 109.47479 * 214.96525 * 18 16 14 21 21 H 1.48501 * 109.47345 * 334.96930 * 18 16 14 22 22 C 1.40717 * 119.51512 * 359.70227 * 13 12 11 23 23 C 1.37613 * 119.74423 * 0.02562 * 22 13 12 24 24 H 1.08994 * 109.47459 * 237.20800 * 1 2 3 25 25 H 1.09002 * 109.46755 * 357.21470 * 1 2 3 26 26 H 1.09002 * 109.47316 * 117.20636 * 1 2 3 27 27 H 1.08994 * 109.47515 * 239.99931 * 3 2 1 28 28 H 1.09010 * 109.46885 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47341 * 119.99678 * 3 2 1 30 30 H 1.08001 * 119.99597 * 183.84682 * 4 2 1 31 31 H 1.08991 * 109.47109 * 3.64142 * 5 4 2 32 32 H 1.09003 * 109.46707 * 243.63966 * 5 4 2 33 33 H 0.97007 * 120.00010 * 345.00046 * 6 5 4 34 34 H 1.08003 * 119.87782 * 359.97438 * 11 10 7 35 35 H 1.07995 * 120.13072 * 180.27098 * 12 11 10 36 36 H 0.97001 * 120.00158 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.12257 * 179.97438 * 22 13 12 38 38 H 1.07996 * 119.87516 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1346 0.0005 5 6 1.4109 -2.4382 -0.0864 6 7 1.8963 -3.2056 -1.2361 7 16 1.5373 -4.8169 -1.3672 8 8 2.1132 -5.2582 -2.5890 9 8 1.8439 -5.4000 -0.1082 10 6 -0.2087 -4.9478 -1.5643 11 6 -1.0197 -5.0729 -0.4468 12 6 -2.3851 -5.1702 -0.5885 13 6 -2.9563 -5.1543 -1.8745 14 6 -4.3574 -5.2604 -2.0326 15 1 -4.8349 -4.8459 -2.9082 16 6 -5.1255 -5.9024 -1.0547 17 7 -4.5510 -6.6989 -0.1903 18 14 -6.9709 -5.6221 -0.9834 19 1 -7.6647 -6.7008 -1.7320 20 1 -7.4193 -5.6348 0.4322 21 1 -7.2960 -4.3080 -1.5939 22 6 -2.1230 -5.0327 -3.0018 23 6 -0.7607 -4.9311 -2.8360 24 1 -0.3634 -0.5565 0.8638 25 1 -0.3633 1.0265 0.0499 26 1 -0.3634 -0.4698 -0.9140 27 1 2.8872 1.3628 -0.8899 28 1 1.5522 2.1336 0.0005 29 1 2.8872 1.3628 0.8900 30 1 3.2401 -1.1356 0.0633 31 1 0.3466 -2.2370 -0.2071 32 1 1.5711 -3.0114 0.8268 33 1 2.4314 -2.7709 -1.9185 34 1 -0.5785 -5.0900 0.5389 35 1 -3.0154 -5.2631 0.2835 36 1 -5.0832 -7.1436 0.4878 37 1 -2.5509 -5.0199 -3.9933 38 1 -0.1191 -4.8381 -3.6997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232623869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:14 Heat of formation + Delta-G solvation = -79.856491 kcal Electronic energy + Delta-G solvation = -21256.598089 eV Core-core repulsion = 17996.443016 eV Total energy + Delta-G solvation = -3260.155073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.38349 -38.37298 -38.01743 -36.79181 -35.79649 -35.08812 -32.06799 -31.30223 -29.37926 -28.52461 -27.61294 -24.67344 -23.30299 -22.94539 -20.45815 -19.41941 -19.13123 -18.54389 -17.93947 -17.29196 -17.15285 -16.07503 -15.88953 -15.72417 -15.19707 -14.95382 -14.90016 -14.46523 -14.12088 -13.97848 -13.91999 -13.52317 -13.25622 -13.24657 -13.11987 -13.02201 -12.95772 -12.87259 -12.66567 -12.55535 -12.30234 -12.01521 -11.78429 -11.54528 -11.35400 -11.20247 -10.42240 -9.79174 -9.64197 -9.55067 -8.87317 -6.64741 -0.32287 0.48413 1.05229 1.18233 1.36290 1.42331 1.53350 2.11874 2.32532 2.57372 2.93636 3.52490 3.58336 3.87881 4.07083 4.25899 4.30785 4.33381 4.48835 4.53160 4.74183 4.83328 4.87138 4.90893 4.95375 4.98122 5.06538 5.12425 5.17790 5.23842 5.25461 5.52900 5.59155 5.74414 5.75708 5.92398 5.94006 6.15669 6.24417 6.48918 6.68460 6.80777 8.08960 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.015263 B = 0.004572 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.088630 B = 6122.864828 C = 7279.701083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.117 4.117 4 C -0.189 4.189 5 C 0.141 3.859 6 N -1.105 6.105 7 S 2.726 3.274 8 O -1.003 7.003 9 O -1.005 7.005 10 C -0.795 4.795 11 C -0.020 4.020 12 C -0.204 4.204 13 C 0.114 3.886 14 C -0.469 4.469 15 H 0.092 0.908 16 C 0.036 3.964 17 N -0.800 5.800 18 Si 0.991 3.009 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.253 1.253 22 C -0.256 4.256 23 C -0.002 4.002 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.424 0.576 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.298 0.702 37 H 0.111 0.889 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 12.962 1.752 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.107 4.107 3 C -0.174 4.174 4 C -0.209 4.209 5 C 0.015 3.985 6 N -0.866 5.866 7 S 2.821 3.179 8 O -0.994 6.994 9 O -0.995 6.995 10 C -0.888 4.888 11 C -0.040 4.040 12 C -0.225 4.225 13 C 0.110 3.890 14 C -0.496 4.496 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.423 5.423 18 Si 0.810 3.190 19 H -0.185 1.185 20 H -0.187 1.187 21 H -0.176 1.176 22 C -0.277 4.277 23 C -0.022 4.022 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.259 0.741 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.222 12.004 2.135 13.688 hybrid contribution -1.257 -0.038 -0.242 1.281 sum 4.965 11.966 1.893 13.093 Atomic orbital electron populations 1.21038 0.92428 1.03279 1.02180 1.21979 0.96045 0.95772 0.96942 1.20921 1.00113 0.93469 1.02876 1.22554 1.00301 0.92069 1.05942 1.20396 0.98204 0.92086 0.87765 1.55272 1.68469 1.28880 1.33940 1.00236 0.73455 0.72439 0.71723 1.93458 1.78203 1.80564 1.47145 1.93455 1.84566 1.76447 1.45049 1.29620 1.23655 1.35926 0.99635 1.20452 0.93821 0.93545 0.96144 1.21304 0.94079 1.09604 0.97471 1.18190 0.93924 0.84898 0.91954 1.20224 0.92319 1.30792 1.06231 0.88960 1.27013 1.07039 0.91554 0.92774 1.69864 1.41464 1.17783 1.13190 0.85048 0.74401 0.80317 0.79215 1.18481 1.18710 1.17601 1.21265 0.93516 1.15152 0.97726 1.20457 0.95142 0.91851 0.94739 0.91493 0.90437 0.91959 0.90695 0.90958 0.90587 0.85434 0.91219 0.90567 0.74054 0.86671 0.87357 0.89059 0.87089 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.54 71.24 0.61 -2.03 16 2 C -0.11 -1.99 6.05 -16.49 -0.10 -2.09 16 3 C -0.12 -1.57 10.05 71.24 0.72 -0.86 16 4 C -0.19 -3.95 9.29 25.64 0.24 -3.72 16 5 C 0.14 3.75 6.45 85.63 0.55 4.30 16 6 N -1.10 -31.55 5.99 -190.80 -1.14 -32.69 16 7 S 2.73 103.23 5.73 -56.49 -0.32 102.90 16 8 O -1.00 -41.61 17.26 -128.00 -2.21 -43.82 16 9 O -1.01 -42.87 16.72 -128.00 -2.14 -45.01 16 10 C -0.80 -34.89 5.97 22.46 0.13 -34.76 16 11 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16 12 C -0.20 -10.44 8.69 22.73 0.20 -10.24 16 13 C 0.11 5.89 5.56 -21.29 -0.12 5.77 16 14 C -0.47 -23.38 9.05 23.46 0.21 -23.17 16 15 H 0.09 4.33 7.91 -2.91 -0.02 4.30 16 16 C 0.04 1.64 5.12 85.26 0.44 2.08 16 17 N -0.80 -39.12 11.07 21.83 0.24 -38.87 16 18 Si 0.99 34.39 29.60 68.60 2.03 36.42 16 19 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 20 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 21 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 22 C -0.26 -12.29 9.80 22.73 0.22 -12.06 16 23 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 24 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 25 H 0.08 1.25 7.70 -2.39 -0.02 1.23 16 26 H 0.06 1.40 7.66 -2.39 -0.02 1.39 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.84 7.70 -2.38 -0.02 0.82 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.13 2.30 8.05 -2.91 -0.02 2.27 16 31 H 0.07 1.93 5.82 -2.39 -0.01 1.92 16 32 H 0.08 2.11 7.75 -2.39 -0.02 2.09 16 33 H 0.42 9.89 8.65 -96.74 -0.84 9.06 16 34 H 0.12 4.96 7.59 -2.91 -0.02 4.94 16 35 H 0.11 5.65 6.28 -2.91 -0.02 5.63 16 36 H 0.30 12.96 8.30 -92.71 -0.77 12.20 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -63.71 334.41 0.22 -63.49 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.24 Total: 34.94 kcal Atomic # 6 Polarization: -80.88 SS G_CDS: 3.52 Total: -77.36 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.90 Total: -71.56 kcal Atomic # 8 Polarization: -84.48 SS G_CDS: -4.35 Total: -88.83 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Atomic # 16 Polarization: 103.23 SS G_CDS: -0.32 Total: 102.90 kcal Total: -63.71 0.22 -63.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232623869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.368 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds