Wall clock time and date at job start Tue Mar 31 2020 07:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47200 * 2 1 4 4 C 1.50699 * 109.46955 * 240.00715 * 2 1 3 5 5 H 1.08001 * 119.99947 * 240.00136 * 4 2 1 6 6 C 1.37880 * 120.00188 * 59.99460 * 4 2 1 7 7 N 1.31509 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46960 * 60.00466 * 8 6 4 10 10 H 1.48497 * 109.47017 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47212 * 300.00460 * 8 6 4 12 12 N 1.46490 * 109.47408 * 120.00566 * 2 1 3 13 13 C 1.46500 * 120.00016 * 59.99876 * 12 2 1 14 14 C 1.34784 * 120.00130 * 239.99838 * 12 2 1 15 15 O 1.21700 * 119.99637 * 0.20616 * 14 12 2 16 16 C 1.46577 * 119.99918 * 180.20342 * 14 12 2 17 17 C 1.36265 * 125.43713 * 171.41438 * 16 14 12 18 18 C 1.37984 * 114.02907 * 179.74635 * 17 16 14 19 19 C 1.35478 * 113.93545 * 359.97438 * 18 17 16 20 20 S 1.70428 * 111.18909 * 359.97438 * 19 18 17 21 21 C 1.51723 * 123.22586 * 179.97438 * 19 18 17 22 22 C 1.53357 * 107.94837 * 344.21996 * 21 19 18 23 23 O 1.43034 * 109.11030 * 47.92669 * 22 21 19 24 24 C 1.43000 * 114.16160 * 288.42588 * 23 22 21 25 25 H 1.08997 * 109.47168 * 299.99631 * 1 2 3 26 26 H 1.08994 * 109.47466 * 59.99611 * 1 2 3 27 27 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00175 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47278 * 263.46645 * 13 12 2 30 30 H 1.08994 * 109.47530 * 23.47557 * 13 12 2 31 31 H 1.09005 * 109.47099 * 143.47541 * 13 12 2 32 32 H 1.07998 * 122.99019 * 359.75872 * 17 16 14 33 33 H 1.09005 * 109.76238 * 103.83284 * 21 19 18 34 34 H 1.09004 * 109.76761 * 224.55332 * 21 19 18 35 35 H 1.08998 * 109.52945 * 167.81712 * 22 21 19 36 36 H 1.08998 * 109.53006 * 288.03233 * 22 21 19 37 37 H 1.08998 * 109.68410 * 292.28109 * 24 23 22 38 38 H 1.09001 * 109.69217 * 171.71223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8279 -2.5195 -4.0084 10 1 1.8276 -0.4188 -5.2205 11 1 3.8073 -1.1186 -4.0079 12 7 2.0183 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4277 14 6 2.7933 -0.0357 2.0832 15 8 3.0842 1.1305 1.8926 16 6 3.2856 -0.7282 3.2777 17 6 4.2022 -0.2334 4.1562 18 6 4.4923 -1.0834 5.2037 19 6 3.8115 -2.2542 5.1663 20 16 2.7815 -2.3247 3.8103 21 6 3.9692 -3.3414 6.2127 22 6 5.2493 -3.0518 7.0059 23 8 5.2579 -1.6753 7.3948 24 6 5.4828 -0.7637 6.3162 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.7093 1.1620 -3.4843 29 1 0.8044 -2.1455 2.0953 30 1 1.4166 -2.5672 0.4780 31 1 2.5092 -2.6108 1.8825 32 1 4.6608 0.7378 4.0430 33 1 3.1102 -3.3345 6.8837 34 1 4.0485 -4.3133 5.7255 35 1 5.2775 -3.6818 7.8949 36 1 6.1191 -3.2599 6.3828 37 1 6.5013 -0.8780 5.9452 38 1 5.3297 0.2587 6.6615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264094253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:18 Heat of formation + Delta-G solvation = -44.702332 kcal Electronic energy + Delta-G solvation = -21490.003867 eV Core-core repulsion = 18231.373193 eV Total energy + Delta-G solvation = -3258.630674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.80513 -39.04892 -36.45368 -35.30151 -33.05101 -32.50077 -30.26759 -29.00478 -26.48006 -25.84543 -25.28995 -24.75681 -22.59205 -20.93624 -19.29164 -18.06728 -17.67124 -16.76813 -16.44277 -16.13512 -15.42440 -15.21718 -14.93700 -14.75844 -14.47630 -13.85217 -13.32061 -13.25048 -13.03185 -12.73389 -12.60561 -12.56389 -11.95149 -11.88598 -11.65090 -11.44811 -11.19391 -11.07184 -10.89481 -10.74933 -10.51740 -10.30092 -10.21784 -9.76557 -9.31413 -9.16417 -8.53014 -8.47402 -8.25137 -7.67670 -6.11607 -4.20351 0.69584 1.61292 2.06191 2.42591 3.25378 3.30947 3.32257 3.62379 3.72133 3.84946 4.35782 4.46763 4.64096 4.80160 4.95478 5.07974 5.18924 5.20845 5.22582 5.39019 5.40834 5.49259 5.57848 5.73079 5.78475 6.01130 6.18296 6.24810 6.44298 6.70767 6.78248 6.90273 6.99921 7.31958 7.45972 7.65474 7.95507 8.12609 8.39262 8.75280 8.92528 9.46134 10.93785 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.003756 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.015829 B = 7452.402216 C = 7616.389397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.071 3.929 14 C 0.574 3.426 15 O -0.539 6.539 16 C -0.246 4.246 17 C -0.059 4.059 18 C -0.161 4.161 19 C -0.242 4.242 20 S 0.240 5.760 21 C -0.080 4.080 22 C 0.065 3.935 23 O -0.379 6.379 24 C 0.127 3.873 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -9.979 16.430 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.075 4.075 14 C 0.360 3.640 15 O -0.419 6.419 16 C -0.367 4.367 17 C -0.092 4.092 18 C -0.174 4.174 19 C -0.361 4.361 20 S 0.512 5.488 21 C -0.119 4.119 22 C -0.013 4.013 23 O -0.297 6.297 24 C 0.048 3.952 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.903 -10.273 15.779 19.229 hybrid contribution 1.317 0.393 -0.616 1.506 sum 5.219 -9.880 15.163 18.835 Atomic orbital electron populations 1.22102 0.97887 0.99530 1.01015 1.19021 0.91035 0.94581 0.79406 0.91594 1.21265 1.32169 1.13219 0.90221 0.92213 1.24885 0.94833 0.94946 0.98962 1.69862 1.36101 1.22447 1.24005 0.86533 0.79282 0.79554 0.81897 1.20172 1.21107 1.20206 1.48154 1.48516 1.11193 1.23614 1.21812 0.98899 0.83807 1.03027 1.16985 0.79392 0.86179 0.81419 1.90782 1.58945 1.15926 1.76276 1.24722 1.08170 1.00157 1.03650 1.20300 0.96338 1.00465 0.92077 1.19997 1.03207 0.94613 0.99573 1.25229 1.06382 1.00286 1.04171 1.83549 1.39805 1.13443 1.12037 1.20957 1.00173 0.95621 0.95112 1.22603 0.96072 0.83231 0.99435 1.87952 1.93155 1.15734 1.32854 1.21514 0.95294 0.93820 0.84545 0.96864 0.88619 0.95065 0.92517 0.92841 0.88048 0.92382 0.83292 0.89470 0.89546 0.88274 0.92617 0.91690 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.62 2.63 -69.09 -0.18 6.44 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.17 7.95 -34.44 -0.27 -14.44 16 5 H 0.06 1.56 7.44 -52.49 -0.39 1.17 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.58 -12.75 2.75 -176.85 -0.49 -13.23 16 13 C 0.07 1.20 7.85 59.85 0.47 1.67 16 14 C 0.57 12.63 7.64 -12.89 -0.10 12.53 16 15 O -0.54 -13.82 16.18 5.19 0.08 -13.74 16 16 C -0.25 -4.32 6.21 -36.93 -0.23 -4.55 16 17 C -0.06 -0.93 9.85 -40.38 -0.40 -1.33 16 18 C -0.16 -2.15 5.84 -104.88 -0.61 -2.77 16 19 C -0.24 -3.04 6.23 -34.79 -0.22 -3.26 16 20 S 0.24 3.20 17.85 -107.50 -1.92 1.28 16 21 C -0.08 -0.74 6.52 -27.19 -0.18 -0.91 16 22 C 0.06 0.56 6.82 37.34 0.25 0.82 16 23 O -0.38 -4.30 10.72 -35.23 -0.38 -4.68 16 24 C 0.13 1.38 7.12 36.82 0.26 1.65 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 30 H 0.10 1.77 7.13 -51.93 -0.37 1.40 16 31 H 0.06 0.88 4.62 -23.30 -0.11 0.77 16 32 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -31.67 319.50 -8.10 -39.76 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.86 Total: -0.15 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.96 Total: -5.61 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.14 Total: -37.42 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.29 Total: -18.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.92 Total: 1.28 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.67 -8.10 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.938 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds