Wall clock time and date at job start Tue Mar 31 2020 07:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47200 * 2 1 4 4 C 1.50699 * 109.46955 * 240.00715 * 2 1 3 5 5 H 1.08001 * 119.99947 * 240.00136 * 4 2 1 6 6 C 1.37880 * 120.00188 * 59.99460 * 4 2 1 7 7 N 1.31509 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99924 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46960 * 60.00466 * 8 6 4 10 10 H 1.48497 * 109.47017 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47212 * 300.00460 * 8 6 4 12 12 N 1.46490 * 109.47408 * 120.00566 * 2 1 3 13 13 C 1.46500 * 120.00016 * 59.99876 * 12 2 1 14 14 C 1.34784 * 120.00130 * 239.99838 * 12 2 1 15 15 O 1.21700 * 119.99637 * 0.20616 * 14 12 2 16 16 C 1.46577 * 119.99918 * 180.20342 * 14 12 2 17 17 C 1.36265 * 125.43713 * 171.41438 * 16 14 12 18 18 C 1.37984 * 114.02907 * 179.74635 * 17 16 14 19 19 C 1.35478 * 113.93545 * 359.97438 * 18 17 16 20 20 S 1.70428 * 111.18909 * 359.97438 * 19 18 17 21 21 C 1.51723 * 123.22586 * 179.97438 * 19 18 17 22 22 C 1.53357 * 107.94837 * 344.21996 * 21 19 18 23 23 O 1.43034 * 109.11030 * 47.92669 * 22 21 19 24 24 C 1.43000 * 114.16160 * 288.42588 * 23 22 21 25 25 H 1.08997 * 109.47168 * 299.99631 * 1 2 3 26 26 H 1.08994 * 109.47466 * 59.99611 * 1 2 3 27 27 H 1.09005 * 109.47200 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00175 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47278 * 263.46645 * 13 12 2 30 30 H 1.08994 * 109.47530 * 23.47557 * 13 12 2 31 31 H 1.09005 * 109.47099 * 143.47541 * 13 12 2 32 32 H 1.07998 * 122.99019 * 359.75872 * 17 16 14 33 33 H 1.09005 * 109.76238 * 103.83284 * 21 19 18 34 34 H 1.09004 * 109.76761 * 224.55332 * 21 19 18 35 35 H 1.08998 * 109.52945 * 167.81712 * 22 21 19 36 36 H 1.08998 * 109.53006 * 288.03233 * 22 21 19 37 37 H 1.08998 * 109.68410 * 292.28109 * 24 23 22 38 38 H 1.09001 * 109.69217 * 171.71223 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8279 -2.5195 -4.0084 10 1 1.8276 -0.4188 -5.2205 11 1 3.8073 -1.1186 -4.0079 12 7 2.0183 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4277 14 6 2.7933 -0.0357 2.0832 15 8 3.0842 1.1305 1.8926 16 6 3.2856 -0.7282 3.2777 17 6 4.2022 -0.2334 4.1562 18 6 4.4923 -1.0834 5.2037 19 6 3.8115 -2.2542 5.1663 20 16 2.7815 -2.3247 3.8103 21 6 3.9692 -3.3414 6.2127 22 6 5.2493 -3.0518 7.0059 23 8 5.2579 -1.6753 7.3948 24 6 5.4828 -0.7637 6.3162 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.7093 1.1620 -3.4843 29 1 0.8044 -2.1455 2.0953 30 1 1.4166 -2.5672 0.4780 31 1 2.5092 -2.6108 1.8825 32 1 4.6608 0.7378 4.0430 33 1 3.1102 -3.3345 6.8837 34 1 4.0485 -4.3133 5.7255 35 1 5.2775 -3.6818 7.8949 36 1 6.1191 -3.2599 6.3828 37 1 6.5013 -0.8780 5.9452 38 1 5.3297 0.2587 6.6615 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264094253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:17 Heat of formation + Delta-G solvation = -65.179373 kcal Electronic energy + Delta-G solvation = -21490.891818 eV Core-core repulsion = 18231.373193 eV Total energy + Delta-G solvation = -3259.518625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99834 -40.42944 -37.64410 -36.98156 -34.94081 -33.41841 -31.88151 -30.34407 -27.97307 -27.33783 -26.76109 -25.97473 -23.71900 -22.42553 -20.75374 -19.22527 -19.09584 -18.44483 -17.61531 -17.42596 -16.95957 -16.38526 -16.26962 -16.08014 -15.91427 -15.07113 -14.60674 -14.54636 -14.25912 -14.16418 -14.04012 -13.73304 -13.55334 -13.22931 -12.99772 -12.91313 -12.76897 -12.70497 -12.39910 -12.23717 -12.15350 -11.95003 -11.49638 -11.26000 -10.96206 -10.61948 -10.53870 -9.81244 -9.38112 -9.25589 -8.16928 -6.34314 -0.50648 0.45391 0.94903 1.24614 1.41820 1.44423 1.51872 2.11412 2.24374 2.43858 2.91336 3.11396 3.53187 3.65307 3.84386 4.00842 4.13539 4.30183 4.34020 4.46369 4.47059 4.61535 4.67712 4.71198 4.76360 4.84269 4.85294 4.91267 4.96737 5.01422 5.19002 5.37667 5.42265 5.51279 5.61623 5.97621 6.10908 6.15246 6.62649 6.72050 7.17173 7.38635 8.87794 Molecular weight = 295.10amu Principal moments of inertia in cm(-1) A = 0.030897 B = 0.003756 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.015829 B = 7452.402216 C = 7616.389397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.010 0.990 4 C -0.543 4.543 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.592 5.592 13 C 0.067 3.933 14 C 0.566 3.434 15 O -0.597 6.597 16 C -0.299 4.299 17 C -0.052 4.052 18 C -0.177 4.177 19 C -0.227 4.227 20 S 0.294 5.706 21 C -0.082 4.082 22 C 0.058 3.942 23 O -0.393 6.393 24 C 0.128 3.872 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.414 -13.462 18.070 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.161 3.839 3 H 0.028 0.972 4 C -0.582 4.582 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.321 5.321 13 C -0.078 4.078 14 C 0.355 3.645 15 O -0.481 6.481 16 C -0.419 4.419 17 C -0.086 4.086 18 C -0.189 4.189 19 C -0.347 4.347 20 S 0.566 5.434 21 C -0.120 4.120 22 C -0.019 4.019 23 O -0.312 6.312 24 C 0.050 3.950 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.378 -13.809 17.436 22.669 hybrid contribution 1.202 1.431 -0.981 2.110 sum 5.579 -12.378 16.455 21.334 Atomic orbital electron populations 1.21891 0.96611 1.00478 1.00111 1.18641 0.91950 0.92248 0.81040 0.97156 1.21518 1.32334 1.13361 0.90946 0.91888 1.25742 0.94900 0.95583 1.02024 1.70011 1.37070 1.23752 1.24668 0.85478 0.78322 0.79116 0.77924 1.18338 1.20864 1.20409 1.48109 1.48529 1.12987 1.22511 1.22060 1.00863 0.81055 1.03797 1.17593 0.78620 0.85801 0.82474 1.90725 1.60958 1.18487 1.77909 1.24310 1.10906 1.03449 1.03265 1.20444 0.95362 1.00462 0.92289 1.20166 1.04437 0.94582 0.99732 1.25789 1.04266 1.00708 1.03920 1.83053 1.38959 1.09627 1.11762 1.21211 1.01051 0.95402 0.94383 1.22875 0.95935 0.82279 1.00860 1.87946 1.93201 1.17001 1.33003 1.21580 0.95221 0.94373 0.83817 0.96222 0.91005 0.92984 0.92489 0.90244 0.88344 0.90244 0.84268 0.88219 0.86856 0.85484 0.91924 0.90292 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.97 71.98 0.65 -5.80 16 2 C 0.26 14.00 2.63 44.25 0.12 14.11 16 3 H 0.01 0.67 6.90 -2.38 -0.02 0.65 16 4 C -0.54 -29.64 7.95 25.60 0.20 -29.43 16 5 H 0.06 3.31 7.44 -2.91 -0.02 3.29 16 6 C 0.02 0.96 5.30 84.66 0.45 1.40 16 7 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.59 -26.48 2.75 -831.64 -2.29 -28.76 16 13 C 0.07 2.18 7.85 127.77 1.00 3.18 16 14 C 0.57 26.05 7.64 86.42 0.66 26.71 16 15 O -0.60 -32.95 16.18 -4.35 -0.07 -33.02 16 16 C -0.30 -10.55 6.21 23.99 0.15 -10.40 16 17 C -0.05 -1.63 9.85 21.75 0.21 -1.42 16 18 C -0.18 -4.43 5.84 -20.03 -0.12 -4.55 16 19 C -0.23 -4.99 6.23 25.37 0.16 -4.83 16 20 S 0.29 7.09 17.85 -56.49 -1.01 6.08 16 21 C -0.08 -1.13 6.52 30.29 0.20 -0.93 16 22 C 0.06 0.76 6.82 72.10 0.49 1.26 16 23 O -0.39 -7.69 10.72 -148.98 -1.60 -9.28 16 24 C 0.13 2.54 7.12 71.77 0.51 3.05 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 27 H 0.05 2.25 7.67 -2.38 -0.02 2.23 16 28 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.08 2.18 7.76 -2.39 -0.02 2.16 16 30 H 0.10 3.29 7.13 -2.39 -0.02 3.27 16 31 H 0.08 2.24 4.62 -20.59 -0.10 2.14 16 32 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -72.70 319.50 2.97 -69.73 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.99 Total: 10.80 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.68 Total: -7.65 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.05 Total: -81.37 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.67 Total: -42.30 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.01 Total: 6.08 kcal Total: -72.70 2.97 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264094253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds